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Aliases for SMIM2-AS1 Gene

Subcategory (RNA class) for SMIM2-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SMIM2-AS1 Gene

  • SMIM2 Antisense RNA 1 2 3
  • SMIM2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C13orf44 Antisense RNA 1 (Non-Protein Coding) 2
  • C13orf44-AS1 3
  • C3orf81-AS1 3

External Ids for SMIM2-AS1 Gene

Previous HGNC Symbols for SMIM2-AS1 Gene

  • C13orf44-AS1

Previous GeneCards Identifiers for SMIM2-AS1 Gene

  • GC13P044719

Summaries for SMIM2-AS1 Gene

GeneCards Summary for SMIM2-AS1 Gene

SMIM2-AS1 (SMIM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM2-AS1 Gene

Genomics for SMIM2-AS1 Gene

Genomic Location for SMIM2-AS1 Gene

Start:
44,110,451 bp from pter
End:
44,240,517 bp from pter
Size:
130,067 bases
Orientation:
Plus strand

Genomic View for SMIM2-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMIM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM2-AS1 Gene

No data available for Regulatory Elements for SMIM2-AS1 Gene

Proteins for SMIM2-AS1 Gene

Post-translational modifications for SMIM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM2-AS1 Gene

Domains for SMIM2-AS1 Gene

Gene Families for SMIM2-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMIM2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM2-AS1 Gene

Function for SMIM2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMIM2-AS1 Gene

Localization for SMIM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMIM2-AS1 Gene

Pathways for SMIM2-AS1 Gene

SuperPathways for SMIM2-AS1 Gene

No Data Available

Interacting Proteins for SMIM2-AS1 Gene

Gene Ontology (GO) - Biological Process for SMIM2-AS1 Gene

None

No data available for Pathways by source for SMIM2-AS1 Gene

Transcripts for SMIM2-AS1 Gene

mRNA/cDNA for SMIM2-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM2-AS1 Gene

No ASD Table

Relevant External Links for SMIM2-AS1 Gene

GeneLoc Exon Structure for
SMIM2-AS1
ECgene alternative splicing isoforms for
SMIM2-AS1

Expression for SMIM2-AS1 Gene

mRNA expression in normal human tissues for SMIM2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM2-AS1 Gene

This gene is overexpressed in Testis (7.1), Kidney - Cortex (7.0), and Liver (5.3).
genes like me logo Genes that share expressions with SMIM2-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SMIM2-AS1 Gene

Orthologs for SMIM2-AS1 Gene

Evolution for SMIM2-AS1 Gene

ENSEMBL:
Gene Tree for SMIM2-AS1 (if available)
TreeFam:
Gene Tree for SMIM2-AS1 (if available)

No data available for Orthologs for SMIM2-AS1 Gene

Paralogs for SMIM2-AS1 Gene

No data available for Paralogs for SMIM2-AS1 Gene

Variants for SMIM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMIM2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs20478 -- 44,111,928(+) CCCAC(A/G)CTTAC intron-variant
rs20479 -- 44,112,102(+) CTAAA(A/C)GTGGA intron-variant
rs717090 -- 44,111,708(-) AGGTT(A/T)GAAGA intron-variant
rs717091 -- 44,111,810(-) AATTC(C/T)GCACT intron-variant
rs4073467 -- 44,131,830(+) TGCAT(C/G)GCTGG intron-variant

Relevant External Links for SMIM2-AS1 Gene

HapMap Linkage Disequilibrium report
SMIM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SMIM2-AS1 Gene

Disorders for SMIM2-AS1 Gene

No disorders were found for SMIM2-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SMIM2-AS1 Gene

Publications for SMIM2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  2. Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. (PMID: 24204828) Zheng J.S. … Lai C.Q. (PLoS ONE 2013) 3

Products for SMIM2-AS1 Gene

Sources for SMIM2-AS1 Gene

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