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Aliases for SMIM2-AS1 Gene

Subcategory (RNA class) for SMIM2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMIM2-AS1 Gene

  • SMIM2 Antisense RNA 1 2 3 5
  • C13orf44 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMIM2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C13orf44-AS1 3
  • C3orf81-AS1 3

External Ids for SMIM2-AS1 Gene

Previous HGNC Symbols for SMIM2-AS1 Gene

  • C13orf44-AS1

Previous GeneCards Identifiers for SMIM2-AS1 Gene

  • GC13P044719

Summaries for SMIM2-AS1 Gene

GeneCards Summary for SMIM2-AS1 Gene

SMIM2-AS1 (SMIM2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMIM2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM2-AS1 Gene

Genomics for SMIM2-AS1 Gene

Regulatory Elements for SMIM2-AS1 Gene

Enhancers for SMIM2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H044141 1.3 ENCODE dbSUPER 23 +32.0 32045 3 PKNOX1 ZFP64 ARID4B DMAP1 YY1 ZNF766 ZNF207 ZNF143 FOS SP3 SMIM2-AS1 LINC00390 GC13P044121
GH13H044173 1.1 Ensembl ENCODE dbSUPER 20.6 +64.3 64327 1 BHLHE40 MAFG BACH1 ZNF316 MAFF NFE2 MAFK EMSY NFE2L2 SMIM2-AS1 SMIM2 ENSG00000276854
GH13H044270 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +163.3 163267 6 GTF2F1 TBP ATF1 IRF2 CEBPG RAD21 ZIC2 YY1 FOSL1 ZNF316 GPALPP1 NUFIP1 SERP2 SMIM2-AS1 LACC1 CCDC122 GC13M044260 GC13M044319
GH13H044155 1.2 Ensembl ENCODE dbSUPER 13.7 +45.6 45632 1 PKNOX1 INSM2 ZNF76 KLF17 FEZF1 ZNF2 ZNF324 ZFHX2 PRDM10 EGR2 GPALPP1 SMIM2-AS1 SMIM2-IT1 LINC00390
GH13H044191 1.4 Ensembl ENCODE dbSUPER 11 +81.5 81456 1 FOXA2 ZSCAN4 NFRKB INSM2 ZNF76 KLF17 ZNF2 RAD21 YY1 ZNF366 SMIM2 SMIM2-IT1 SMIM2-AS1 TSC22D1 ENSG00000276854
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMIM2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMIM2-AS1 Gene

Chromosome:
13
Start:
44,110,451 bp from pter
End:
44,240,517 bp from pter
Size:
130,067 bases
Orientation:
Plus strand

Genomic View for SMIM2-AS1 Gene

Genes around SMIM2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM2-AS1 Gene

Proteins for SMIM2-AS1 Gene

Post-translational modifications for SMIM2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM2-AS1 Gene

Domains & Families for SMIM2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM2-AS1 Gene

Function for SMIM2-AS1 Gene

Phenotypes From GWAS Catalog for SMIM2-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SMIM2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM2-AS1 Gene

Localization for SMIM2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMIM2-AS1 Gene

Pathways & Interactions for SMIM2-AS1 Gene

SuperPathways for SMIM2-AS1 Gene

No Data Available

Interacting Proteins for SMIM2-AS1 Gene

Gene Ontology (GO) - Biological Process for SMIM2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM2-AS1 Gene

Drugs & Compounds for SMIM2-AS1 Gene

No Compound Related Data Available

Transcripts for SMIM2-AS1 Gene

mRNA/cDNA for SMIM2-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SMIM2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM2-AS1 Gene

No ASD Table

Relevant External Links for SMIM2-AS1 Gene

GeneLoc Exon Structure for
SMIM2-AS1
ECgene alternative splicing isoforms for
SMIM2-AS1

Expression for SMIM2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMIM2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM2-AS1 Gene

This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x7.0), and Liver (x5.3).
genes like me logo Genes that share expression patterns with SMIM2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM2-AS1 Gene

Orthologs for SMIM2-AS1 Gene

Evolution for SMIM2-AS1 Gene

ENSEMBL:
Gene Tree for SMIM2-AS1 (if available)
TreeFam:
Gene Tree for SMIM2-AS1 (if available)

No data available for Orthologs for SMIM2-AS1 Gene

Paralogs for SMIM2-AS1 Gene

No data available for Paralogs for SMIM2-AS1 Gene

Variants for SMIM2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMIM2-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000082478 -- 44,132,123(+) GATAG(A/G)ACAGT intron-variant
rs1000345202 -- 44,124,431(+) CCTTT(C/T)GATCA intron-variant
rs1000385919 -- 44,139,566(+) AAAAA(A/T)AAATC intron-variant
rs1000403246 -- 44,119,555(+) TATTC(A/C/T)TTTGA intron-variant
rs1000530443 -- 44,137,398(+) ATTTC(C/T)AGCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMIM2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1426964 CNV deletion 17803354
esv2747329 CNV deletion 23290073
esv2747331 CNV deletion 23290073
esv3631931 CNV loss 21293372
esv988004 CNV deletion 20482838
nsv1048346 CNV gain 25217958

Relevant External Links for SMIM2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMIM2-AS1 Gene

Disorders for SMIM2-AS1 Gene

Relevant External Links for SMIM2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMIM2-AS1

No disorders were found for SMIM2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM2-AS1 Gene

Publications for SMIM2-AS1 Gene

  1. Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. (PMID: 24204828) Zheng JS … Lai CQ (PloS one 2013) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for SMIM2-AS1 Gene

Sources for SMIM2-AS1 Gene

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