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Aliases for SMIM18 Gene

Aliases for SMIM18 Gene

  • Small Integral Membrane Protein 18 2 3

External Ids for SMIM18 Gene

Previous GeneCards Identifiers for SMIM18 Gene

  • GC08P030497

Summaries for SMIM18 Gene

GeneCards Summary for SMIM18 Gene

SMIM18 (Small Integral Membrane Protein 18) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM18 Gene

Genomics for SMIM18 Gene

Genomic Location for SMIM18 Gene

Start:
30,638,546 bp from pter
End:
30,646,064 bp from pter
Size:
7,519 bases
Orientation:
Plus strand

Genomic View for SMIM18 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMIM18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM18 Gene

No data available for Regulatory Elements for SMIM18 Gene

Proteins for SMIM18 Gene

  • Protein details for SMIM18 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DKX4-SIM18_HUMAN
    Recommended name:
    Small integral membrane protein 18
    Protein Accession:
    P0DKX4
    Secondary Accessions:

    Protein attributes for SMIM18 Gene

    Size:
    95 amino acids
    Molecular mass:
    11088 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM18 Gene

Proteomics data for SMIM18 Gene at MOPED

Post-translational modifications for SMIM18 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SMIM18 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM18 Gene

Domains for SMIM18 Gene

Protein Domains for SMIM18 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMIM18: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM18 Gene

Function for SMIM18 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMIM18 Gene

Localization for SMIM18 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM18 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM18 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM18: view

No data available for Subcellular locations from COMPARTMENTS for SMIM18 Gene

Pathways for SMIM18 Gene

SuperPathways for SMIM18 Gene

No Data Available

Interacting Proteins for SMIM18 Gene

Gene Ontology (GO) - Biological Process for SMIM18 Gene

None

No data available for Pathways by source for SMIM18 Gene

Transcripts for SMIM18 Gene

mRNA/cDNA for SMIM18 Gene

(0) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM18 Gene

Small integral membrane protein 18:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM18 Gene

No ASD Table

Relevant External Links for SMIM18 Gene

GeneLoc Exon Structure for
SMIM18
ECgene alternative splicing isoforms for
SMIM18

Expression for SMIM18 Gene

mRNA expression in normal human tissues for SMIM18 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SMIM18 Gene

This gene is overexpressed in Brain - Hypothalamus (6.5), Brain - Cerebellar Hemisphere (5.3), Brain - Cerebellum (4.4), and Brain - Anterior cingulate cortex (BA24) (4.3).

SOURCE GeneReport for Unigene cluster for SMIM18 Gene Hs.659493

genes like me logo Genes that share expressions with SMIM18: view

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for SMIM18 Gene

Orthologs for SMIM18 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SMIM18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SMIM18 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SMIM18 35
  • 93.68 (n)
  • 94.74 (a)
dog
(Canis familiaris)
Mammalia SMIM18 35
  • 94.39 (n)
  • 95.79 (a)
mouse
(Mus musculus)
Mammalia Smim18 35
  • 87.81 (n)
  • 91.4 (a)
Smim18 16
Smim18 36
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC100909793 35
  • 90.18 (n)
  • 96.84 (a)
chicken
(Gallus gallus)
Aves SMIM18 35
  • 79.79 (n)
  • 82.98 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia smim18 35
  • 69.82 (n)
  • 68.42 (a)
Species with no ortholog for SMIM18:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SMIM18 Gene

ENSEMBL:
Gene Tree for SMIM18 (if available)
TreeFam:
Gene Tree for SMIM18 (if available)

Paralogs for SMIM18 Gene

No data available for Paralogs for SMIM18 Gene

Variants for SMIM18 Gene

Relevant External Links for SMIM18 Gene

HapMap Linkage Disequilibrium report
SMIM18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SMIM18 Gene

Disorders for SMIM18 Gene

No disorders were found for SMIM18 Gene.

No data available for UniProtKB/Swiss-Prot for SMIM18 Gene

Publications for SMIM18 Gene

  1. Discovery of 342 putative new genes from the analysis of 5'-end- sequenced full-length-enriched cDNA human transcripts. (PMID: 15885500) Dalla E. … Schneider C. (Genomics 2005) 3 4
  2. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for SMIM18 Gene

Sources for SMIM18 Gene

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