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Aliases for SMIM13 Gene

Aliases for SMIM13 Gene

  • Small Integral Membrane Protein 13 2 3
  • C6orf228 3 4
  • Chromosome 6 Open Reading Frame 228 2
  • UPF0766 Protein C6orf228 3

External Ids for SMIM13 Gene

Previous HGNC Symbols for SMIM13 Gene

  • C6orf228

Summaries for SMIM13 Gene

GeneCards Summary for SMIM13 Gene

SMIM13 (Small Integral Membrane Protein 13) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM13 Gene

Genomics for SMIM13 Gene

Genomic Location for SMIM13 Gene

Start:
11,094,033 bp from pter
End:
11,138,738 bp from pter
Size:
44,706 bases
Orientation:
Plus strand

Genomic View for SMIM13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMIM13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM13 Gene

No data available for Regulatory Elements for SMIM13 Gene

Proteins for SMIM13 Gene

  • Protein details for SMIM13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DJ93-SIM13_HUMAN
    Recommended name:
    Small integral membrane protein 13
    Protein Accession:
    P0DJ93
    Secondary Accessions:
    • G3V581

    Protein attributes for SMIM13 Gene

    Size:
    91 amino acids
    Molecular mass:
    10351 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM13 Gene

Proteomics data for SMIM13 Gene at MOPED

Post-translational modifications for SMIM13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SMIM13 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM13 Gene

Domains for SMIM13 Gene

Protein Domains for SMIM13 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0DJ93

UniProtKB/Swiss-Prot:

SIM13_HUMAN :
  • P0DJ93
Family:
  • Belongs to the SMIM13 family.
genes like me logo Genes that share domains with SMIM13: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SMIM13 Gene

Function for SMIM13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMIM13 Gene

Localization for SMIM13 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM13 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM13: view

No data available for Subcellular locations from COMPARTMENTS for SMIM13 Gene

Pathways for SMIM13 Gene

SuperPathways for SMIM13 Gene

No Data Available

Interacting Proteins for SMIM13 Gene

Gene Ontology (GO) - Biological Process for SMIM13 Gene

None

No data available for Pathways by source for SMIM13 Gene

Transcripts for SMIM13 Gene

mRNA/cDNA for SMIM13 Gene

(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM13 Gene

Small integral membrane protein 13:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SMIM13

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM13 Gene

No ASD Table

Relevant External Links for SMIM13 Gene

GeneLoc Exon Structure for
SMIM13
ECgene alternative splicing isoforms for
SMIM13

Expression for SMIM13 Gene

mRNA expression in normal human tissues for SMIM13 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM13 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (4.1).

Protein differential expression in normal tissues for SMIM13 Gene

This gene is overexpressed in Fetal Brain (10.5), Frontal cortex (9.4), Retina (8.2), Bone (7.8), and Pancreas (7.1).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for SMIM13 Gene

SOURCE GeneReport for Unigene cluster for SMIM13 Gene Hs.656600

genes like me logo Genes that share expressions with SMIM13: view

Expression partners for SMIM13 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SMIM13 Gene

Orthologs for SMIM13 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SMIM13 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SMIM13 35
  • 88.89 (n)
  • 94.25 (a)
SMIM13 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SMIM13 35
  • 89.66 (n)
  • 93.1 (a)
mouse
(Mus musculus)
Mammalia Smim13 35
  • 88.51 (n)
  • 89.66 (a)
Smim13 16
Smim13 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf228 35
  • 100 (n)
  • 100 (a)
rat
(Rattus norvegicus)
Mammalia LOC690806 35
  • 87.74 (n)
  • 88.51 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100488147 35
  • 61.63 (n)
  • 63.95 (a)
zebrafish
(Danio rerio)
Actinopterygii si:dkey-206d17.5 35
  • 65.87 (n)
  • 64.29 (a)
SMIM13 (1 of 2) 36
  • 61 (a)
OneToMany
SMIM13 (2 of 2) 36
  • 61 (a)
OneToMany
Species with no ortholog for SMIM13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SMIM13 Gene

ENSEMBL:
Gene Tree for SMIM13 (if available)
TreeFam:
Gene Tree for SMIM13 (if available)

Paralogs for SMIM13 Gene

No data available for Paralogs for SMIM13 Gene

Variants for SMIM13 Gene

Sequence variations from dbSNP and Humsavar for SMIM13 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs2208841 -- 11,121,993(+) TCTGT(A/G)GTCAA intron-variant
rs2208842 -- 11,122,077(+) ATTCA(C/T)TGGCA intron-variant
rs2224653 -- 11,121,790(+) ATACA(A/G)TCATT intron-variant
rs2273884 -- 11,094,448(+) CTGGG(G/T)TTTTT intron-variant
rs2327334 -- 11,092,288(+) AAATT(A/C)TTTTA upstream-variant-2KB

Relevant External Links for SMIM13 Gene

HapMap Linkage Disequilibrium report
SMIM13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SMIM13 Gene

Disorders for SMIM13 Gene

No disorders were found for SMIM13 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SMIM13 Gene

Publications for SMIM13 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for SMIM13 Gene

Sources for SMIM13 Gene

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