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Aliases for SMIM10 Gene

Subcategory (RNA class) for SMIM10 Gene

lncRNA

Aliases for SMIM10 Gene

  • Small Integral Membrane Protein 10 2 3
  • CXorf69 3 4
  • Chromosome X Open Reading Frame 69 2

External Ids for SMIM10 Gene

ORGUL Members for SMIM10 Gene

Previous Symbols for SMIM10 Gene

  • CXorf69

Summaries for SMIM10 Gene

GeneCards Summary for SMIM10 Gene

SMIM10 (Small Integral Membrane Protein 10) is a Protein Coding gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM10 Gene

Genomics for SMIM10 Gene

Genomic Location for SMIM10 Gene

Start:
134,990,938 bp from pter
End:
134,992,473 bp from pter
Size:
1,536 bases
Orientation:
Plus strand

Genomic View for SMIM10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMIM10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM10 Gene

No data available for Regulatory Elements for SMIM10 Gene

Proteins for SMIM10 Gene

  • Protein details for SMIM10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96HG1-SIM10_HUMAN
    Recommended name:
    Small integral membrane protein 10
    Protein Accession:
    Q96HG1
    Secondary Accessions:

    Protein attributes for SMIM10 Gene

    Size:
    83 amino acids
    Molecular mass:
    9236 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH08642.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SMIM10 Gene

Proteomics data for SMIM10 Gene at MOPED

Post-translational modifications for SMIM10 Gene

No Post-translational modifications

Other Protein References for SMIM10 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM10 Gene

Domains for SMIM10 Gene

Protein Domains for SMIM10 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMIM10: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM10 Gene

Function for SMIM10 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMIM10 Gene

Localization for SMIM10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM10 Gene

Cell membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM10: view

No data available for Subcellular locations from COMPARTMENTS for SMIM10 Gene

Pathways for SMIM10 Gene

SuperPathways for SMIM10 Gene

No Data Available

Interacting Proteins for SMIM10 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000328335%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000328335 for SMIM10 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for SMIM10 Gene

None

No data available for Pathways by source for SMIM10 Gene

Transcripts for SMIM10 Gene

mRNA/cDNA for SMIM10 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM10 Gene

Small integral membrane protein 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM10 Gene

No ASD Table

Relevant External Links for SMIM10 Gene

GeneLoc Exon Structure for
SMIM10
ECgene alternative splicing isoforms for
SMIM10

Expression for SMIM10 Gene

mRNA expression in normal human tissues for SMIM10 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM10 Gene

This gene is overexpressed in Artery - Tibial (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SMIM10 Gene

SOURCE GeneReport for Unigene cluster for SMIM10 Gene Hs.42239

genes like me logo Genes that share expressions with SMIM10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SMIM10 Gene

Orthologs for SMIM10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SMIM10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100614576 35
  • 99.6 (n)
  • 100 (a)
SMIM10 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 68 (a)
OneToMany
SMIM10 36
  • 78 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 69 (a)
OneToMany
-- 36
  • 62 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
mouse
(Mus musculus)
Mammalia 6330419J24Rik 36
  • 69 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SMIM10 36
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves SMIM10 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 60 (a)
OneToMany
-- 36
  • 60 (a)
OneToMany
Species with no ortholog for SMIM10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SMIM10 Gene

ENSEMBL:
Gene Tree for SMIM10 (if available)
TreeFam:
Gene Tree for SMIM10 (if available)

Paralogs for SMIM10 Gene

No data available for Paralogs for SMIM10 Gene

Variants for SMIM10 Gene

Sequence variations from dbSNP and Humsavar for SMIM10 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs11739 -- 134,991,445(+) CGCTC(C/G)TGCAT utr-variant-3-prime
rs1047473 -- 134,991,179(+) GTGCG(G/T)CTGTC reference, synonymous-codon
rs2498769 -- 134,992,364(+) AGGAG(A/G)GACAG utr-variant-3-prime
rs3180615 -- 134,991,113(+) GGCTC(A/T)GGGCA synonymous-codon, reference
rs4830318 -- 134,992,849(+) GGCAC(C/G)TGTAA downstream-variant-500B

Relevant External Links for SMIM10 Gene

HapMap Linkage Disequilibrium report
SMIM10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SMIM10 Gene

Disorders for SMIM10 Gene

No disorders were found for SMIM10 Gene.

No data available for UniProtKB/Swiss-Prot for SMIM10 Gene

Publications for SMIM10 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Global identification of modular cullin-RING ligase substrates. (PMID: 21963094) Emanuele M.J. … Elledge S.J. (Cell 2011) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for SMIM10 Gene

Sources for SMIM10 Gene

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