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Aliases for SMG7-AS1 Gene

Subcategory (RNA class) for SMG7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMG7-AS1 Gene

  • SMG7 Antisense RNA 1 2 3 5
  • SMG7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • DKFZP564C196 3

External Ids for SMG7-AS1 Gene

Summaries for SMG7-AS1 Gene

GeneCards Summary for SMG7-AS1 Gene

SMG7-AS1 (SMG7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG7-AS1 Gene

Genomics for SMG7-AS1 Gene

Regulatory Elements for SMG7-AS1 Gene

Promoters for SMG7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMG7-AS1 Gene

Chromosome:
1
Start:
183,460,874 bp from pter
End:
183,472,265 bp from pter
Size:
11,392 bases
Orientation:
Minus strand

Genomic View for SMG7-AS1 Gene

Genes around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG7-AS1 Gene

Proteins for SMG7-AS1 Gene

Post-translational modifications for SMG7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG7-AS1 Gene

Domains & Families for SMG7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG7-AS1 Gene

Function for SMG7-AS1 Gene

Phenotypes for SMG7-AS1 Gene

GenomeRNAi human phenotypes for SMG7-AS1:
genes like me logo Genes that share phenotypes with SMG7-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG7-AS1 Gene

Localization for SMG7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG7-AS1 Gene

Pathways & Interactions for SMG7-AS1 Gene

SuperPathways for SMG7-AS1 Gene

No Data Available

Interacting Proteins for SMG7-AS1 Gene

Gene Ontology (GO) - Biological Process for SMG7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG7-AS1 Gene

Drugs & Compounds for SMG7-AS1 Gene

No Compound Related Data Available

Transcripts for SMG7-AS1 Gene

mRNA/cDNA for SMG7-AS1 Gene

(3) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMG7-AS1 Gene

SMG7 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMG7-AS1 Gene

No ASD Table

Relevant External Links for SMG7-AS1 Gene

GeneLoc Exon Structure for
SMG7-AS1
ECgene alternative splicing isoforms for
SMG7-AS1

Expression for SMG7-AS1 Gene

mRNA expression in normal human tissues for SMG7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMG7-AS1 Gene

This gene is overexpressed in Testis (x29.1).

SOURCE GeneReport for Unigene cluster for SMG7-AS1 Gene Hs.127384

genes like me logo Genes that share expression patterns with SMG7-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SMG7-AS1 Gene

Orthologs for SMG7-AS1 Gene

Evolution for SMG7-AS1 Gene

ENSEMBL:
Gene Tree for SMG7-AS1 (if available)
TreeFam:
Gene Tree for SMG7-AS1 (if available)

No data available for Orthologs for SMG7-AS1 Gene

Paralogs for SMG7-AS1 Gene

No data available for Paralogs for SMG7-AS1 Gene

Variants for SMG7-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMG7-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs2275675 -- 183,470,348(-) GTATG(A/G)TGCGG intron-variant
rs7518244 -- 183,465,672(+) ttacc(C/T)agata intron-variant
rs6669960 -- 183,467,442(+) GGCTA(C/G)GGTTT intron-variant
rs9425597 -- 183,468,199(+) CAGGT(C/T)ACCAA intron-variant
rs12118430 -- 183,463,380(+) CTCCA(C/T)CTCTA intron-variant

Relevant External Links for SMG7-AS1 Gene

HapMap Linkage Disequilibrium report
SMG7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG7-AS1 Gene

Disorders for SMG7-AS1 Gene

Relevant External Links for SMG7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG7-AS1

No disorders were found for SMG7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG7-AS1 Gene

Publications for SMG7-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67

Products for SMG7-AS1 Gene

Sources for SMG7-AS1 Gene

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