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Aliases for SMG7-AS1 Gene

Subcategory (RNA class) for SMG7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMG7-AS1 Gene

  • SMG7 Antisense RNA 1 2 3 5
  • SMG7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • DKFZP564C196 3

External Ids for SMG7-AS1 Gene

Summaries for SMG7-AS1 Gene

GeneCards Summary for SMG7-AS1 Gene

SMG7-AS1 (SMG7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMG7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG7-AS1 Gene

Genomics for SMG7-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMG7-AS1 Gene

Promoters and enhancers for SMG7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I183469 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 567.9 +0.5 457 4.2 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 SMG7 SMG7-AS1 DHX9 LAMC1-AS1 HMGN1P4 ENSG00000271387 LAMC1 RNASEL LAMC2 NCF2
GH01I184385 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE 45.5 -915.8 -915843 4.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF213 ZNF416 SP3 ZNF662 REST CBX8 ENSG00000271387 C1orf21 SMG7-AS1 SWT1 ENSG00000273004 SMG7 EDEM3 ENSG00000230470
GH01I182613 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 11.3 +856.6 856633 3.4 PKNOX1 FEZF1 ZNF2 IRF4 YY1 ZNF766 ZNF213 ZNF207 ZNF143 KLF13 LINC01686 HMGN1P4 DHX9 LAMC1-AS1 SMG7-AS1 RGS16 GC01P182625
GH01I182789 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.9 +682.6 682564 1.4 SMAD1 SIN3A ZNF2 YY1 POLR2B ZNF766 ZNF207 ZNF143 REST SMARCB1 NPL DHX9 SMG7-AS1 KRT18P28 LAMC1-AS1 GC01P182831
GH01I183459 Enhancer 1.1 Ensembl ENCODE dbSUPER 17.3 +11.2 11202 2.6 PKNOX1 SMAD1 TEAD4 NEUROD1 ZBTB7B CTBP1 GATA3 POLR2A VEZF1 SMARCE1 SMG7-AS1 SMG7 LOC105371646
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG7-AS1 Gene

Genomic Locations for SMG7-AS1 Gene
chr1:183,460,874-183,472,265
(GRCh38/hg38)
Size:
11,392 bases
Orientation:
Minus strand
chr1:183,430,009-183,441,117
(GRCh37/hg19)

Genomic View for SMG7-AS1 Gene

Genes around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG7-AS1 Gene

Proteins for SMG7-AS1 Gene

Post-translational modifications for SMG7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG7-AS1 Gene

Domains & Families for SMG7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG7-AS1 Gene

Function for SMG7-AS1 Gene

Phenotypes for SMG7-AS1 Gene

GenomeRNAi human phenotypes for SMG7-AS1:
genes like me logo Genes that share phenotypes with SMG7-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG7-AS1 Gene

Localization for SMG7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG7-AS1 Gene

Pathways & Interactions for SMG7-AS1 Gene

SuperPathways for SMG7-AS1 Gene

No Data Available

Interacting Proteins for SMG7-AS1 Gene

Gene Ontology (GO) - Biological Process for SMG7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG7-AS1 Gene

Drugs & Compounds for SMG7-AS1 Gene

No Compound Related Data Available

Transcripts for SMG7-AS1 Gene

mRNA/cDNA for SMG7-AS1 Gene

(3) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMG7-AS1 Gene

SMG7 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMG7-AS1 Gene

No ASD Table

Relevant External Links for SMG7-AS1 Gene

GeneLoc Exon Structure for
SMG7-AS1
ECgene alternative splicing isoforms for
SMG7-AS1

Expression for SMG7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMG7-AS1 Gene

This gene is overexpressed in Testis (x29.1).

SOURCE GeneReport for Unigene cluster for SMG7-AS1 Gene:

Hs.127384
genes like me logo Genes that share expression patterns with SMG7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG7-AS1 Gene

Orthologs for SMG7-AS1 Gene

Evolution for SMG7-AS1 Gene

ENSEMBL:
Gene Tree for SMG7-AS1 (if available)
TreeFam:
Gene Tree for SMG7-AS1 (if available)

No data available for Orthologs for SMG7-AS1 Gene

Paralogs for SMG7-AS1 Gene

No data available for Paralogs for SMG7-AS1 Gene

Variants for SMG7-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMG7-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000336012 -- 183,467,531(-) G/C intron_variant
rs1000489694 -- 183,467,270(-) T/C intron_variant
rs1000522885 -- 183,463,853(-) C/A intron_variant
rs1000582255 -- 183,473,755(-) A/G upstream_transcript_variant
rs1000722028 -- 183,464,318(-) AGAAAGAAAGAAAGA/AGAAAGAAAGA intron_variant

Additional Variant Information for SMG7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG7-AS1 Gene

Disorders for SMG7-AS1 Gene

Additional Disease Information for SMG7-AS1

No disorders were found for SMG7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG7-AS1 Gene

Publications for SMG7-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for SMG7-AS1 Gene

Sources for SMG7-AS1 Gene

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