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Aliases for SMG7-AS1 Gene

Subcategory (RNA class) for SMG7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMG7-AS1 Gene

  • SMG7 Antisense RNA 1 2 3 5
  • SMG7 Antisense RNA 1 (Non-Protein Coding) 2 3
  • DKFZP564C196 3

External Ids for SMG7-AS1 Gene

Summaries for SMG7-AS1 Gene

GeneCards Summary for SMG7-AS1 Gene

SMG7-AS1 (SMG7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG7-AS1 Gene

Genomics for SMG7-AS1 Gene

Regulatory Elements for SMG7-AS1 Gene

Enhancers for SMG7-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F184385 1.2 FANTOM5 ENCODE 27.8 -915.8 -915844 4.6 PKNOX1 ZNF133 SIN3A FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF416 KLF7 SMG7-AS1 ENSG00000227554 FTH1P25 ENSG00000252612 LOC100422414 SWT1 EDEM3 C1orf21 ENSG00000230470
GH01F183469 0.5 ENCODE 26.2 +0.5 457 4.2 CREB3L1 MLX FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC ENSG00000224468 HMGN1P4 SMG7-AS1 ENSG00000227554 LOC100271717 RNA5SP71 LINC01688 LAMC1 SMG7 ENSG00000271387
GH01F182613 0.4 ENCODE 19.7 +856.6 856634 3.4 HDGF PKNOX1 CREB3L1 FEZF1 ZNF2 YY1 ZNF766 ZNF143 ZNF263 SP3 SMG7-AS1 LINC01688 TEDDM2P RPL18P2 RNA5SP71 LOC100271717 ENSG00000232309 HMGN1P4 RGS16 LINC01686
GH01F184415 1.4 FANTOM5 Ensembl ENCODE 18.3 -946.0 -945954 5.0 PKNOX1 ZNF133 SIN3A GLI4 ZNF2 ZNF121 GLIS2 ZNF416 KLF7 FOS SMG7-AS1 C1orf21 FTH1P25 ENSG00000252612 ENSG00000227554 LOC100422414 SWT1 COLGALT2 ENSG00000230470 GC01P184462
GH01F183459 0.8 Ensembl ENCODE 17.3 +10.7 10679 3.6 PKNOX1 HLF TEAD4 CEBPB DPF2 ELF1 JUND CTBP1 BCL11A IKZF1 SMG7-AS1 SMG7 LOC105371646
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SMG7-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000549006 564 4200 CREB3L1 MLX FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC

Genomic Location for SMG7-AS1 Gene

Chromosome:
1
Start:
183,460,874 bp from pter
End:
183,472,265 bp from pter
Size:
11,392 bases
Orientation:
Minus strand

Genomic View for SMG7-AS1 Gene

Genes around SMG7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG7-AS1 Gene

Proteins for SMG7-AS1 Gene

Post-translational modifications for SMG7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG7-AS1 Gene

Domains & Families for SMG7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG7-AS1 Gene

Function for SMG7-AS1 Gene

Phenotypes for SMG7-AS1 Gene

GenomeRNAi human phenotypes for SMG7-AS1:
genes like me logo Genes that share phenotypes with SMG7-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG7-AS1 Gene

Localization for SMG7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG7-AS1 Gene

Pathways & Interactions for SMG7-AS1 Gene

SuperPathways for SMG7-AS1 Gene

No Data Available

Interacting Proteins for SMG7-AS1 Gene

Gene Ontology (GO) - Biological Process for SMG7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG7-AS1 Gene

Transcripts for SMG7-AS1 Gene

mRNA/cDNA for SMG7-AS1 Gene

(3) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMG7-AS1 Gene

SMG7 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMG7-AS1 Gene

No ASD Table

Relevant External Links for SMG7-AS1 Gene

GeneLoc Exon Structure for
SMG7-AS1
ECgene alternative splicing isoforms for
SMG7-AS1

Expression for SMG7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMG7-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMG7-AS1 Gene

This gene is overexpressed in Testis (x29.1).

SOURCE GeneReport for Unigene cluster for SMG7-AS1 Gene:

Hs.127384
genes like me logo Genes that share expression patterns with SMG7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMG7-AS1 Gene

Orthologs for SMG7-AS1 Gene

Evolution for SMG7-AS1 Gene

ENSEMBL:
Gene Tree for SMG7-AS1 (if available)
TreeFam:
Gene Tree for SMG7-AS1 (if available)

No data available for Orthologs for SMG7-AS1 Gene

Paralogs for SMG7-AS1 Gene

No data available for Paralogs for SMG7-AS1 Gene

Variants for SMG7-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMG7-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10911339 -- 183,472,962(+) ACGTC(C/T)GGGGA intron-variant, upstream-variant-2KB
rs111287163 -- 183,462,700(+) ACCTC(C/T)ACCAC intron-variant
rs111594487 -- 183,464,562(+) TTTAA(C/T)TGAAT intron-variant
rs112259656 -- 183,471,970(+) AAGAC(A/C)GGCGT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs112516148 -- 183,468,554(+) GAGGC(A/G/T)GGAGG intron-variant

Relevant External Links for SMG7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG7-AS1 Gene

Disorders for SMG7-AS1 Gene

Relevant External Links for SMG7-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG7-AS1

No disorders were found for SMG7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG7-AS1 Gene

Publications for SMG7-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for SMG7-AS1 Gene

Sources for SMG7-AS1 Gene

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