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Aliases for SMG6-IT1 Gene

Subcategory (RNA class) for SMG6-IT1 Gene


Quality Score for this RNA gene is


Aliases for SMG6-IT1 Gene

  • SMG6 Intronic Transcript 1 2 3 5
  • SMG6 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 17 Open Reading Frame 6 2
  • C17orf6 3

External Ids for SMG6-IT1 Gene

ORGUL Members for SMG6-IT1 Gene

Previous HGNC Symbols for SMG6-IT1 Gene

  • C17orf6

Previous GeneCards Identifiers for SMG6-IT1 Gene

  • GC17U901711

Summaries for SMG6-IT1 Gene

GeneCards Summary for SMG6-IT1 Gene

SMG6-IT1 (SMG6 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SMG6-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG6-IT1 Gene

Genomics for SMG6-IT1 Gene

Regulatory Elements for SMG6-IT1 Gene

Enhancers for SMG6-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H002235 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.6 -2588 7.3 PKNOX1 TBL1XR1 ZSCAN4 BATF RAD21 RFX5 ZNF143 FOS ATF7 RUNX3 SRR HIC1 ENSG00000236457 ENSG00000236838 OVCA2 DPH1 TSR1 SGSM2 SMG6-IT1 ENSG00000280242
GH17H002242 1.4 Ensembl ENCODE dbSUPER 0.4 -8.3 -8322 3 HDGF PKNOX1 RB1 MLX ARID4B SIN3A ZNF2 RAD21 SCRT2 ZNF143 DPH1 PRPF8 SMYD4 RN7SL608P RPA1 METTL16 ENSG00000263345 SGSM2 SRR WDR81
GH17H002252 0.9 dbSUPER 0.4 -17.6 -17639 3 HDGF PKNOX1 TBL1XR1 ZFP64 BMI1 BATF SCRT2 ATF7 ETV6 RUNX3 SRR SMG6 HNRNPA1P16 SGSM2 ENSG00000263050 METTL16 DPH1 ENSG00000280242 SMG6-IT1
GH17H002249 0.7 ENCODE dbSUPER 0.4 -14.5 -14461 1.4 ZFHX2 JUND EGR2 SRR ENSG00000280242 SMG6-IT1
GH17H002247 0.5 dbSUPER 0.4 -12.4 -12387 1.1 FOXA2 ZBTB33 EBF1 FOXA1 SRR ENSG00000280242 SMG6-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG6-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG6-IT1 Gene

Genomic Locations for SMG6-IT1 Gene
374 bases
Minus strand

Genomic View for SMG6-IT1 Gene

Genes around SMG6-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG6-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG6-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMG6-IT1 Gene

Proteins for SMG6-IT1 Gene

Post-translational modifications for SMG6-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG6-IT1 Gene

Domains & Families for SMG6-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG6-IT1 Gene

Function for SMG6-IT1 Gene

Phenotypes From GWAS Catalog for SMG6-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG6-IT1 Gene

Localization for SMG6-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG6-IT1 Gene

Pathways & Interactions for SMG6-IT1 Gene

SuperPathways for SMG6-IT1 Gene

No Data Available

Interacting Proteins for SMG6-IT1 Gene

Gene Ontology (GO) - Biological Process for SMG6-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SMG6-IT1 Gene

Drugs & Compounds for SMG6-IT1 Gene

No Compound Related Data Available

Transcripts for SMG6-IT1 Gene

mRNA/cDNA for SMG6-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMG6-IT1 Gene

No ASD Table

Relevant External Links for SMG6-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SMG6-IT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG6-IT1 Gene

Orthologs for SMG6-IT1 Gene

Evolution for SMG6-IT1 Gene

Gene Tree for SMG6-IT1 (if available)
Gene Tree for SMG6-IT1 (if available)

No data available for Orthologs for SMG6-IT1 Gene

Paralogs for SMG6-IT1 Gene

No data available for Paralogs for SMG6-IT1 Gene

Variants for SMG6-IT1 Gene

Relevant External Links for SMG6-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG6-IT1 Gene

Disorders for SMG6-IT1 Gene

Relevant External Links for SMG6-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SMG6-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG6-IT1 Gene

Publications for SMG6-IT1 Gene

No publications were found for SMG6-IT1 Gene.

Products for SMG6-IT1 Gene

Sources for SMG6-IT1 Gene

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