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Aliases for SMG6-IT1 Gene

Subcategory (RNA class) for SMG6-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SMG6-IT1 Gene

  • SMG6 Intronic Transcript 1 2 3 5
  • SMG6 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Chromosome 17 Open Reading Frame 6 2
  • C17orf6 3

External Ids for SMG6-IT1 Gene

ORGUL Members for SMG6-IT1 Gene

Previous HGNC Symbols for SMG6-IT1 Gene

  • C17orf6

Previous GeneCards Identifiers for SMG6-IT1 Gene

  • GC17U901711

Summaries for SMG6-IT1 Gene

GeneCards Summary for SMG6-IT1 Gene

SMG6-IT1 (SMG6 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG6-IT1 Gene

Genomics for SMG6-IT1 Gene

Regulatory Elements for SMG6-IT1 Gene

Enhancers for SMG6-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G002235 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.6 -2588 7.3 PKNOX1 FOXA2 WRNIP1 SIN3A FEZF1 ZNF2 ZNF143 FOS JUNB TBX21 SRR HIC1 ENSG00000236457 ENSG00000236838 OVCA2 DPH1 TSR1 SGSM2 SMG6-IT1 ENSG00000280242
GH17G002242 1.4 Ensembl ENCODE dbSUPER 0.4 -8.3 -8322 3.0 HDGF PKNOX1 MLX ARID4B SIN3A ZNF2 ZNF48 RAD21 RARA SCRT2 SMYD4 RN7SL608P RPA1 METTL16 ENSG00000263345 SGSM2 SRR DPH1 SMG6-IT1 ENSG00000280242
GH17G002252 1 dbSUPER 0.4 -17.6 -17639 3.0 HDGF PKNOX1 ZFP64 ARID4B DMAP1 YY1 JUNB REST ZNF623 TBX21 SRR METTL16 RPA1 SMG6 HNRNPA1P16 SGSM2 TSR1 ENSG00000263050 SMYD4 ENSG00000280242
GH17G002249 0.8 ENCODE dbSUPER 0.4 -14.5 -14461 1.4 ZFHX2 ZNF146 JUND EGR2 SRR ENSG00000280242 SMG6-IT1
GH17G002247 0.5 dbSUPER 0.4 -12.4 -12387 1.1 FOXA2 ZBTB33 FOXA1 SRR ENSG00000280242 SMG6-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG6-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMG6-IT1 Gene

Chromosome:
17
Start:
2,235,713 bp from pter
End:
2,236,086 bp from pter
Size:
374 bases
Orientation:
Minus strand

Genomic View for SMG6-IT1 Gene

Genes around SMG6-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG6-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG6-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMG6-IT1 Gene

Proteins for SMG6-IT1 Gene

Post-translational modifications for SMG6-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG6-IT1 Gene

Domains & Families for SMG6-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG6-IT1 Gene

Function for SMG6-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG6-IT1 Gene

Localization for SMG6-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG6-IT1 Gene

Pathways & Interactions for SMG6-IT1 Gene

SuperPathways for SMG6-IT1 Gene

No Data Available

Interacting Proteins for SMG6-IT1 Gene

Gene Ontology (GO) - Biological Process for SMG6-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG6-IT1 Gene

Drugs & Compounds for SMG6-IT1 Gene

No Compound Related Data Available

Transcripts for SMG6-IT1 Gene

mRNA/cDNA for SMG6-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG6-IT1 Gene

No ASD Table

Relevant External Links for SMG6-IT1 Gene

GeneLoc Exon Structure for
SMG6-IT1
ECgene alternative splicing isoforms for
SMG6-IT1

Expression for SMG6-IT1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG6-IT1 Gene

Orthologs for SMG6-IT1 Gene

Evolution for SMG6-IT1 Gene

ENSEMBL:
Gene Tree for SMG6-IT1 (if available)
TreeFam:
Gene Tree for SMG6-IT1 (if available)

No data available for Orthologs for SMG6-IT1 Gene

Paralogs for SMG6-IT1 Gene

No data available for Paralogs for SMG6-IT1 Gene

Variants for SMG6-IT1 Gene

Relevant External Links for SMG6-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG6-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG6-IT1 Gene

Disorders for SMG6-IT1 Gene

Relevant External Links for SMG6-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG6-IT1

No disorders were found for SMG6-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG6-IT1 Gene

Publications for SMG6-IT1 Gene

No publications were found for SMG6-IT1 Gene.

Products for SMG6-IT1 Gene

Sources for SMG6-IT1 Gene

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