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Aliases for SMG1P6 Gene

Aliases for SMG1P6 Gene

  • SMG1 Pseudogene 6 2 3 5
  • SMG1P6, Nonsense Mediated MRNA Decay Associated PI3K Related Kinasepseudogene 6 2

External Ids for SMG1P6 Gene

Previous GeneCards Identifiers for SMG1P6 Gene

  • GC16U901696

Summaries for SMG1P6 Gene

GeneCards Summary for SMG1P6 Gene

SMG1P6 (SMG1 Pseudogene 6) is a Pseudogene.

Additional gene information for SMG1P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P6 Gene

Genomics for SMG1P6 Gene

GeneHancer (GH) Regulatory Elements for SMG1P6 Gene

Promoters and enhancers for SMG1P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I029942 Enhancer 1.6 FANTOM5 Ensembl ENCODE 10 -497.0 -496956 3.7 FEZF1 ZNF213 SP3 MEF2D ZNF610 GLIS1 RCOR2 NBN KDM1A WT1 INO80E SRCAP ENSG00000260853 ZNF785 NPIPB12 SPNS1 ENSG00000260367 PRR14 SMG1P5 NFATC2IP
GH16I030409 Enhancer 1.2 Ensembl ENCODE 4 -962.7 -962668 1.1 SMAD1 ZFP64 ARID4B SIN3A ZNF2 IRF4 ZNF48 SLC30A9 GLIS2 ZNF207 SMG1P5 FUS SRCAP ZNF785 SMG1P2 PRR14 NPIPB12 ENSG00000235560 INO80E ZNF764
GH16I029023 Enhancer 0.8 ENCODE dbSUPER 5.8 +422.4 422427 2.1 CBFA2T3 ZNF121 TCF12 ZNF664 JUND FOS KDM1A CBFA2T2 SMG1P6 ENSG00000260517 NPIPB10P GC16M028992
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMG1P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P6 Gene

Genomic Locations for SMG1P6 Gene
chr16:29,425,800-29,447,026
(GRCh38/hg38)
Size:
21,227 bases
Orientation:
Minus strand

Genomic View for SMG1P6 Gene

Genes around SMG1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P6 Gene

Proteins for SMG1P6 Gene

Post-translational modifications for SMG1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P6 Gene

Domains & Families for SMG1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P6 Gene

Function for SMG1P6 Gene

Phenotypes From GWAS Catalog for SMG1P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P6 Gene

Localization for SMG1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P6 Gene

Pathways & Interactions for SMG1P6 Gene

SuperPathways for SMG1P6 Gene

No Data Available

Interacting Proteins for SMG1P6 Gene

Gene Ontology (GO) - Biological Process for SMG1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P6 Gene

Drugs & Compounds for SMG1P6 Gene

No Compound Related Data Available

Transcripts for SMG1P6 Gene

mRNA/cDNA for SMG1P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P6 Gene

No ASD Table

Relevant External Links for SMG1P6 Gene

GeneLoc Exon Structure for
SMG1P6
ECgene alternative splicing isoforms for
SMG1P6

Expression for SMG1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P6 Gene:

SMG1P6
genes like me logo Genes that share expression patterns with SMG1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P6 Gene

Orthologs for SMG1P6 Gene

Evolution for SMG1P6 Gene

ENSEMBL:
Gene Tree for SMG1P6 (if available)
TreeFam:
Gene Tree for SMG1P6 (if available)

No data available for Orthologs for SMG1P6 Gene

Paralogs for SMG1P6 Gene

No data available for Paralogs for SMG1P6 Gene

Variants for SMG1P6 Gene

Sequence variations from dbSNP and Humsavar for SMG1P6 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000157823 -- 29,436,767(-) C/G intron_variant
rs1000613323 -- 29,436,211(-) A/G intron_variant
rs1000983482 -- 29,429,475(-) C/A intron_variant
rs1001035892 -- 29,429,364(-) G/A intron_variant
rs1001287571 -- 29,425,189(-) A/C downstream_transcript_variant

Additional Variant Information for SMG1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG1P6 Gene

Disorders for SMG1P6 Gene

Additional Disease Information for SMG1P6

No disorders were found for SMG1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P6 Gene

Publications for SMG1P6 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3 58

Products for SMG1P6 Gene

Sources for SMG1P6 Gene

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