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Aliases for SMG1P6 Gene

Aliases for SMG1P6 Gene

  • SMG1P6, Nonsense Mediated MRNA Decay Associated PI3K Related Kinasepseudogene 6 2 3 5
  • SMG1 Pseudogene 6 2

External Ids for SMG1P6 Gene

Previous GeneCards Identifiers for SMG1P6 Gene

  • GC16U901696

Summaries for SMG1P6 Gene

GeneCards Summary for SMG1P6 Gene

SMG1P6 (SMG1P6, Nonsense Mediated MRNA Decay Associated PI3K Related Kinasepseudogene 6) is a Pseudogene.

Additional gene information for SMG1P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P6 Gene

Genomics for SMG1P6 Gene

Regulatory Elements for SMG1P6 Gene

Enhancers for SMG1P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H029942 1.7 FANTOM5 Ensembl ENCODE 10 -497.0 -496957 3.7 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 ZBTB7B ZNF766 INO80E SRCAP ENSG00000260853 NPIPB12 SPNS1 NFATC2IP ENSG00000260367 ZNF785 SMG1P5 SMG1P2
GH16H029803 1.5 ENCODE dbSUPER 11.2 -361.4 -361418 10.3 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 ZNF785 SH2B1 SRCAP ATXN2L NPIPB12 ZNF764 INO80E RNF40 ENSG00000260853 SPNS1
GH16H030444 1.5 FANTOM5 ENCODE 11.1 -999.4 -999396 4.8 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 SETD1A ZNF689 TAOK2 RNF40 SRCAP ZNF764 LOC730183 ZNF646 KAT8 ENSG00000260304
GH16H030063 1.4 ENCODE dbSUPER 11.1 -618.6 -618594 4.9 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A YPEL3 SETD1A RNF40 SMG1P5 ZNF747 SMG1P2 INO80E SRCAP CA5AP1 LOC647086
GH16H028821 1.4 ENCODE dbSUPER 11.1 +622.9 622895 4.4 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 TUFM NPIPB12 ENSG00000198106 SH2B1 ATXN2L NPIPB11 ENSG00000260853 CA5AP1 ENSG00000251417 SPNS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG1P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P6 Gene

Genomic Locations for SMG1P6 Gene
chr16:29,425,800-29,447,026
(GRCh38/hg38)
Size:
21,227 bases
Orientation:
Minus strand

Genomic View for SMG1P6 Gene

Genes around SMG1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P6 Gene

Proteins for SMG1P6 Gene

Post-translational modifications for SMG1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P6 Gene

Domains & Families for SMG1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P6 Gene

Function for SMG1P6 Gene

Phenotypes From GWAS Catalog for SMG1P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P6 Gene

Localization for SMG1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P6 Gene

Pathways & Interactions for SMG1P6 Gene

SuperPathways for SMG1P6 Gene

No Data Available

Interacting Proteins for SMG1P6 Gene

Gene Ontology (GO) - Biological Process for SMG1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P6 Gene

Drugs & Compounds for SMG1P6 Gene

No Compound Related Data Available

Transcripts for SMG1P6 Gene

mRNA/cDNA for SMG1P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P6 Gene

No ASD Table

Relevant External Links for SMG1P6 Gene

GeneLoc Exon Structure for
SMG1P6
ECgene alternative splicing isoforms for
SMG1P6

Expression for SMG1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P6 Gene:

SMG1P6
genes like me logo Genes that share expression patterns with SMG1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P6 Gene

Orthologs for SMG1P6 Gene

Evolution for SMG1P6 Gene

ENSEMBL:
Gene Tree for SMG1P6 (if available)
TreeFam:
Gene Tree for SMG1P6 (if available)

No data available for Orthologs for SMG1P6 Gene

Paralogs for SMG1P6 Gene

No data available for Paralogs for SMG1P6 Gene

Variants for SMG1P6 Gene

Sequence variations from dbSNP and Humsavar for SMG1P6 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000157823 -- 29,436,767(+) AGAAG(C/G)ATTAT intron-variant
rs1000613323 -- 29,436,211(+) AATAT(A/G)TATTT intron-variant
rs1000983482 -- 29,429,475(+) CCGAT(A/C)CACCA intron-variant
rs1001035892 -- 29,429,364(+) CTCAA(A/G)TCCCC intron-variant
rs1001287571 -- 29,425,189(+) TCACT(A/C)CATAT downstream-variant-500B

Relevant External Links for SMG1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG1P6 Gene

Disorders for SMG1P6 Gene

Relevant External Links for SMG1P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P6

No disorders were found for SMG1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P6 Gene

Publications for SMG1P6 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3 60

Products for SMG1P6 Gene

Sources for SMG1P6 Gene

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