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Aliases for SMG1P6 Gene

Aliases for SMG1P6 Gene

  • SMG1P6, Nonsense Mediated MRNA Decay Associated PI3K Related Kinasepseudogene 6 2 3 5
  • SMG1 Pseudogene 6 2

External Ids for SMG1P6 Gene

Previous GeneCards Identifiers for SMG1P6 Gene

  • GC16U901696

Summaries for SMG1P6 Gene

GeneCards Summary for SMG1P6 Gene

SMG1P6 (SMG1P6, Nonsense Mediated MRNA Decay Associated PI3K Related Kinasepseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P6 Gene

Genomics for SMG1P6 Gene

Regulatory Elements for SMG1P6 Gene

Enhancers for SMG1P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F029942 1.7 FANTOM5 Ensembl ENCODE 10 -497.0 -496957 3.7 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZNF207 FOS ENSG00000260853 MIR4517 SMG1P2 INO80E ENSG00000260367 ZNF785 CD2BP2 CDIPT NPIPB13 ENSG00000247735
GH16F029346 1.1 Ensembl ENCODE 4.8 +98.2 98226 4.4 HDAC1 FOS NCOA1 TBX21 SMARCA4 IKZF1 GLIS1 NBN KDM1A MYC SMG1P6 MAPK3 GDPD3 PIR48621 ENSG00000278078
GH16F029023 0.8 Ensembl ENCODE 5.8 +422.6 422601 2.4 ZNF121 HDAC1 ZNF664 TAL1 ZBTB33 FOS KDM1A SMG1P6 ENSG00000260517 NPIPB10P GC16M028992
GH16F030409 1 ENCODE 3.9 -962.7 -962669 1.1 ZFP64 ARID4B SIN3A ZNF48 ZNF2 SLC30A9 GLIS2 ZNF207 ZNF143 MXD4 SMG1P5 SMG1P6 GC16M030397 ZNF771
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG1P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMG1P6 Gene

Chromosome:
16
Start:
29,425,800 bp from pter
End:
29,447,026 bp from pter
Size:
21,227 bases
Orientation:
Minus strand

Genomic View for SMG1P6 Gene

Genes around SMG1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P6 Gene

Proteins for SMG1P6 Gene

Post-translational modifications for SMG1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P6 Gene

Domains & Families for SMG1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P6 Gene

Function for SMG1P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P6 Gene

Localization for SMG1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG1P6 Gene

Pathways & Interactions for SMG1P6 Gene

SuperPathways for SMG1P6 Gene

No Data Available

Interacting Proteins for SMG1P6 Gene

Gene Ontology (GO) - Biological Process for SMG1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P6 Gene

Transcripts for SMG1P6 Gene

mRNA/cDNA for SMG1P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P6 Gene

No ASD Table

Relevant External Links for SMG1P6 Gene

GeneLoc Exon Structure for
SMG1P6
ECgene alternative splicing isoforms for
SMG1P6

Expression for SMG1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMG1P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P6 Gene:

SMG1P6
genes like me logo Genes that share expression patterns with SMG1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMG1P6 Gene

Orthologs for SMG1P6 Gene

Evolution for SMG1P6 Gene

ENSEMBL:
Gene Tree for SMG1P6 (if available)
TreeFam:
Gene Tree for SMG1P6 (if available)

No data available for Orthologs for SMG1P6 Gene

Paralogs for SMG1P6 Gene

No data available for Paralogs for SMG1P6 Gene

Variants for SMG1P6 Gene

Sequence variations from dbSNP and Humsavar for SMG1P6 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1063917 -- 29,431,410(-) GGAAA(C/T)AAAGC nc-transcript-variant
rs1063918 -- 29,431,384(-) CTCAA(C/T)TGCCG nc-transcript-variant
rs111769336 -- 29,431,245(+) TTGGA(A/T)ATTTG intron-variant
rs112628000 -- 29,424,948(+) TTGAC(A/T)TATAA downstream-variant-500B
rs113754605 -- 29,431,310(+) GTTGA(A/G)GGAAG nc-transcript-variant

Relevant External Links for SMG1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG1P6 Gene

Disorders for SMG1P6 Gene

Relevant External Links for SMG1P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P6

No disorders were found for SMG1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P6 Gene

Publications for SMG1P6 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M. … Tsurudome M. (Int. J. Biochem. Cell Biol. 2002) 3 64

Products for SMG1P6 Gene

Sources for SMG1P6 Gene

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