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Aliases for SMG1P5 Gene

Aliases for SMG1P5 Gene

  • SMG1P5, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 5 2 3 5
  • SMG1 Pseudogene 5 2

External Ids for SMG1P5 Gene

Summaries for SMG1P5 Gene

GeneCards Summary for SMG1P5 Gene

SMG1P5 (SMG1P5, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 5) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P5 Gene

Genomics for SMG1P5 Gene

Regulatory Elements for SMG1P5 Gene

Enhancers for SMG1P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G030182 1.4 ENCODE dbSUPER 21.9 +150.1 150119 6.4 HDGF PKNOX1 ARNT AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 SMG1P5 ZNF771 INO80E YPEL3 LOC613038 ENSG00000198106 ENSG00000261416 SLX1A
GH16G030367 2 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -40.7 -40659 17.0 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 MYLPF SMG1P2 ZNF785 ENSG00000260304 ZNF747 NPIPB13 PRR14 ZNF764 BCL7C ZNF48
GH16G030170 1 Ensembl 21.8 +164.2 164233 0.6 HDGF PKNOX1 FOXA2 MLX ARID4B DMAP1 SP5 MIER2 PPARG TBX21 SMG1P5 ZNF771 CORO1A MAPK3
GH16G030308 0.8 Ensembl 22.1 +26.7 26674 0.6 HDAC1 ETV1 TAL1 TCF12 FOXM1 ZNF316 NCOR1 ADNP SMARCE1 MTA2 SMG1P5 GC16M030274
GH16G030398 1.4 Ensembl ENCODE 11.4 -65.0 -65022 3.8 FOXA2 MLX CREB3L1 AGO1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 TBC1D10B SMG1P5 CD2BP2 SEPHS2 GC16P030401 PIR39668 SEPT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG1P5 on UCSC Golden Path with GeneCards custom track

Promoters for SMG1P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085182 774 2401 PKNOX1 SIN3A KLF13 ZNF263 SP3 SP5 MXD4 REST TBX21 KAT8

Genomic Location for SMG1P5 Gene

Chromosome:
16
Start:
30,267,553 bp from pter
End:
30,335,374 bp from pter
Size:
67,822 bases
Orientation:
Minus strand

Genomic View for SMG1P5 Gene

Genes around SMG1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P5 Gene

Proteins for SMG1P5 Gene

Post-translational modifications for SMG1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P5 Gene

Domains & Families for SMG1P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P5 Gene

Function for SMG1P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P5 Gene

Localization for SMG1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG1P5 Gene

Pathways & Interactions for SMG1P5 Gene

SuperPathways for SMG1P5 Gene

No Data Available

Interacting Proteins for SMG1P5 Gene

Gene Ontology (GO) - Biological Process for SMG1P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P5 Gene

Transcripts for SMG1P5 Gene

mRNA/cDNA for SMG1P5 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P5 Gene

No ASD Table

Relevant External Links for SMG1P5 Gene

GeneLoc Exon Structure for
SMG1P5
ECgene alternative splicing isoforms for
SMG1P5

Expression for SMG1P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P5 Gene:

SMG1P5
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P5 Gene

Orthologs for SMG1P5 Gene

Evolution for SMG1P5 Gene

ENSEMBL:
Gene Tree for SMG1P5 (if available)
TreeFam:
Gene Tree for SMG1P5 (if available)

No data available for Orthologs for SMG1P5 Gene

Paralogs for SMG1P5 Gene

No data available for Paralogs for SMG1P5 Gene

Variants for SMG1P5 Gene

Sequence variations from dbSNP and Humsavar for SMG1P5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000205779 -- 30,312,766(+) AATGT(C/T)TGAGC intron-variant
rs1000235096 -- 30,295,060(+) TTCTC(C/T)TCTTC intron-variant
rs1000255422 -- 30,306,800(+) CATAA(A/C)CTATT intron-variant
rs1000507440 -- 30,325,301(+) ATTTA(G/T)TAAGT intron-variant
rs1000565920 -- 30,295,584(+) CACTT(G/T)GGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P5 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2758642 CNV gain 17122850
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638384 CNV loss 21293372
esv3638385 CNV loss 21293372
nsv1078393 CNV duplication 25765185
nsv1141284 CNV duplication 24896259
nsv1148121 CNV duplication 26484159
nsv9433 CNV loss 18304495
nsv9434 CNV loss 18304495
nsv9437 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Relevant External Links for SMG1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P5 Gene

Disorders for SMG1P5 Gene

Relevant External Links for SMG1P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P5

No disorders were found for SMG1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P5 Gene

Publications for SMG1P5 Gene

  1. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus B.J. … Adams M.D. (Genomics 1999) 3 64

Products for SMG1P5 Gene

Sources for SMG1P5 Gene

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