Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SMG1P4 Gene

Aliases for SMG1P4 Gene

  • SMG1P4, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 4 2 3 5
  • SMG1 Pseudogene 4 2

External Ids for SMG1P4 Gene

Summaries for SMG1P4 Gene

GeneCards Summary for SMG1P4 Gene

SMG1P4 (SMG1P4, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P4 Gene

Genomics for SMG1P4 Gene

Regulatory Elements for SMG1P4 Gene

Enhancers for SMG1P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F021501 1.2 ENCODE 62.4 +416.6 416627 2.5 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 THUMPD1 NPIPB5 ENSG00000260635 SMG1P1 SMG1P4 MFSD13B RRN3P1 EEF2K ENSG00000260306 DCUN1D3
GH16F021819 1 ENCODE 72.2 +98.9 98897 1.6 HDGF ZFP64 ZNF493 SIN3A FEZF1 ZNF2 YY1 ZNF121 ZNF302 ZNF143 NPIPB5 ENSG00000260635 SMG1P1 SMG1P4 ENSG00000260905 MFSD13B RRN3P1 ENSG00000260306 EEF2K DCUN1D3
GH16F022296 1.2 ENCODE 35.1 -378.6 -378627 3.2 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SMG1P1 ENSG00000260635 SMG1P4 SCNN1B C16orf52 NPIPB5 RRN3P1 MFSD13B ENSG00000260306 CDR2
GH16F022006 1.3 FANTOM5 ENCODE 28.8 -89.1 -89102 2.8 ATF1 PKNOX1 ARID4B SIN3A ZNF48 YY1 ZNF548 SP3 ZHX2 MIER2 SMG1P4 SMG1P1 NPIPB5 ENSG00000260635 ENSG00000260905 EEF2K VWA3A ENSG00000260306 OTOA ENSG00000275445
GH16F021934 1.3 Ensembl ENCODE 27.6 -17.4 -17407 3.5 HDGF MLX ARID4B YBX1 ZNF2 SLC30A9 ZNF143 ZNF548 PAF1 SP3 SMG1P4 SMG1P1 NPIPB5 ENSG00000260635 EEF2K ENSG00000260905 C16orf52 ENSG00000260306 LOC342293 GC16M021908
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG1P4 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMG1P4 Gene

Chromosome:
16
Start:
21,879,337 bp from pter
End:
21,919,156 bp from pter
Size:
39,820 bases
Orientation:
Minus strand

Genomic View for SMG1P4 Gene

Genes around SMG1P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P4 Gene

Proteins for SMG1P4 Gene

Post-translational modifications for SMG1P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P4 Gene

Domains & Families for SMG1P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P4 Gene

Function for SMG1P4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P4 Gene

Localization for SMG1P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG1P4 Gene

Pathways & Interactions for SMG1P4 Gene

SuperPathways for SMG1P4 Gene

No Data Available

Interacting Proteins for SMG1P4 Gene

Gene Ontology (GO) - Biological Process for SMG1P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P4 Gene

Transcripts for SMG1P4 Gene

mRNA/cDNA for SMG1P4 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P4 Gene

No ASD Table

Relevant External Links for SMG1P4 Gene

GeneLoc Exon Structure for
SMG1P4
ECgene alternative splicing isoforms for
SMG1P4

Expression for SMG1P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMG1P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P4 Gene:

SMG1P4
genes like me logo Genes that share expression patterns with SMG1P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMG1P4 Gene

Orthologs for SMG1P4 Gene

Evolution for SMG1P4 Gene

ENSEMBL:
Gene Tree for SMG1P4 (if available)
TreeFam:
Gene Tree for SMG1P4 (if available)

No data available for Orthologs for SMG1P4 Gene

Paralogs for SMG1P4 Gene

No data available for Paralogs for SMG1P4 Gene

Variants for SMG1P4 Gene

Relevant External Links for SMG1P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG1P4 Gene

Disorders for SMG1P4 Gene

No disorders were found for SMG1P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMG1P4 Gene

Publications for SMG1P4 Gene

No publications were found for SMG1P4 Gene.

Products for SMG1P4 Gene

Sources for SMG1P4 Gene

Content
Loading form....