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Aliases for SMG1P3 Gene

Aliases for SMG1P3 Gene

  • SMG1P3, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 3 2 3 5
  • SMG1 Pseudogene 3 2

External Ids for SMG1P3 Gene

Summaries for SMG1P3 Gene

GeneCards Summary for SMG1P3 Gene

SMG1P3 (SMG1P3, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P3 Gene

Genomics for SMG1P3 Gene

Regulatory Elements for SMG1P3 Gene

Enhancers for SMG1P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F021515 0.7 Ensembl ENCODE 0.8 +4.7 4749 0.6 PKNOX1 MLX ARID4B FEZF1 ZNF121 GLIS2 KLF7 MIER2 TSHZ1 PPARG LOC646828 LOC342293 LOC81691 PIR36552 SLC7A5P2 SMG1P3
GH16F021517 0.4 ENCODE 0.8 +0.2 216 4.7 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 THUMPD1 LOC646828 LOC342293 LOC81691 RRN3P1 METTL9 SMG1P1 SMG1P4 NPIPB5 SLC7A5P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SMG1P3 on UCSC Golden Path with GeneCards custom track

Promoters for SMG1P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001504233 844 2401 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for SMG1P3 Gene

Chromosome:
16
Start:
21,446,683 bp from pter
End:
21,520,444 bp from pter
Size:
73,762 bases
Orientation:
Minus strand

Genomic View for SMG1P3 Gene

Genes around SMG1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P3 Gene

Proteins for SMG1P3 Gene

Post-translational modifications for SMG1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P3 Gene

Domains & Families for SMG1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P3 Gene

Function for SMG1P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P3 Gene

Localization for SMG1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG1P3 Gene

Pathways & Interactions for SMG1P3 Gene

SuperPathways for SMG1P3 Gene

No Data Available

Interacting Proteins for SMG1P3 Gene

Gene Ontology (GO) - Biological Process for SMG1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P3 Gene

Transcripts for SMG1P3 Gene

mRNA/cDNA for SMG1P3 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7
SP1: -
SP2: -

Relevant External Links for SMG1P3 Gene

GeneLoc Exon Structure for
SMG1P3
ECgene alternative splicing isoforms for
SMG1P3

Expression for SMG1P3 Gene

mRNA expression in normal human tissues for SMG1P3 Gene

Protein differential expression in normal tissues from HIPED for SMG1P3 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SMG1P3 Gene



Protein tissue co-expression partners for SMG1P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P3 Gene:

SMG1P3
genes like me logo Genes that share expression patterns with SMG1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SMG1P3 Gene

Orthologs for SMG1P3 Gene

Evolution for SMG1P3 Gene

ENSEMBL:
Gene Tree for SMG1P3 (if available)
TreeFam:
Gene Tree for SMG1P3 (if available)

No data available for Orthologs for SMG1P3 Gene

Paralogs for SMG1P3 Gene

No data available for Paralogs for SMG1P3 Gene

Variants for SMG1P3 Gene

Sequence variations from dbSNP and Humsavar for SMG1P3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs11074512 -- 21,464,907(-) AGTTG(A/G)CTTCT intron-variant
rs111309233 -- 21,497,865(+) TCTTC(C/T)TTGTT intron-variant
rs111653513 -- 21,499,576(+) CCTGC(A/G)TCTGA intron-variant
rs111966252 -- 21,472,163(+) TATTT(A/T)CAAAA intron-variant
rs113022634 -- 21,487,207(+) CATCC(C/T)AGTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P3 Gene

Variant ID Type Subtype PubMed ID
dgv1316n106 CNV duplication 24896259
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
esv25717 CNV gain+loss 19812545
esv2758636 CNV gain+loss 17122850
esv33799 CNV loss 17666407
esv34235 CNV gain 17911159
nsv1110272 CNV duplication 24896259
nsv1139646 CNV duplication 24896259
nsv1150881 CNV duplication 26484159
nsv1152437 CNV duplication 26484159
nsv1160372 CNV duplication 26073780
nsv428322 CNV gain 18775914
nsv433437 CNV gain 18776910
nsv433438 CNV gain 18776910
nsv436835 CNV insertion 17901297
nsv509606 CNV insertion 20534489
nsv827584 CNV gain 20364138
nsv9396 CNV gain 18304495
nsv9397 CNV gain+loss 18304495
nsv978037 CNV duplication 23825009
nsv978108 CNV duplication 23825009

Relevant External Links for SMG1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P3 Gene

Disorders for SMG1P3 Gene

Relevant External Links for SMG1P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P3

No disorders were found for SMG1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P3 Gene

Publications for SMG1P3 Gene

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M. … Tsurudome M. (Int. J. Biochem. Cell Biol. 2002) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SMG1P3 Gene

Sources for SMG1P3 Gene

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