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Aliases for SMG1P3 Gene

Aliases for SMG1P3 Gene

  • SMG1P3, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 3 2 3 5
  • SMG1 Pseudogene 3 2

External Ids for SMG1P3 Gene

Summaries for SMG1P3 Gene

GeneCards Summary for SMG1P3 Gene

SMG1P3 (SMG1P3, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 3) is a Pseudogene.

Additional gene information for SMG1P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P3 Gene

Genomics for SMG1P3 Gene

Regulatory Elements for SMG1P3 Gene

Enhancers for SMG1P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H021819 1.1 ENCODE 97 -299.8 -299816 1.6 HDGF ZFP64 SIN3A FEZF1 ZNF2 YY1 ZNF302 ZNF143 ZNF207 ZNF548 NPIPB4 NPIPB5 NPIPB3 SMG1P3 ENSG00000260635 SMG1P4 SMG1P1 ENSG00000260905 POLR3E MFSD13B
GH16H022194 1.9 FANTOM5 Ensembl ENCODE dbSUPER 40.9 -675.3 -675256 2.2 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 ZBTB7B YY1 SMG1P3 SMG1P1 NPIPB3 C16orf52 NPIPB4 SMG1P4 NPIPB5 POLR3E MFSD13B ENSG00000260635
GH16H022296 1.2 ENCODE 63.8 -777.3 -777339 3.2 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC PPARGC1A ZFP41 NPIPB4 SMG1P3 NPIPB3 NPIPB5 SMG1P1 MFSD13B RRN3P1 C16orf52 SMG1P4 ENSG00000260635
GH16H022006 1.3 FANTOM5 ENCODE 40.5 -487.8 -487814 2.8 PKNOX1 ATF1 ARID4B SIN3A YY1 ZNF548 ATF7 SP3 ZHX2 MIER2 SMG1P4 SMG1P1 SMG1P3 NPIPB4 NPIPB5 NPIPB3 ENSG00000260635 ENSG00000260905 POLR3E EEF2K
GH16H021950 1.2 ENCODE 31.9 -432.3 -432262 3.9 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YBX1 ZNF2 ZBTB7B ENSG00000260635 SMG1P1 SMG1P4 SMG1P3 NPIPB4 NPIPB5 NPIPB3 POLR3E RRN3P1 ENSG00000260905
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG1P3 on UCSC Golden Path with GeneCards custom track

Promoters for SMG1P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000084352 944 2201 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1

Genomic Locations for SMG1P3 Gene

Genomic Locations for SMG1P3 Gene
chr16:21,446,683-21,520,444
(GRCh38/hg38)
Size:
73,762 bases
Orientation:
Minus strand
chr16:21,458,004-21,531,765
(GRCh37/hg19)

Genomic View for SMG1P3 Gene

Genes around SMG1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P3 Gene

Proteins for SMG1P3 Gene

Post-translational modifications for SMG1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P3 Gene

Domains & Families for SMG1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P3 Gene

Function for SMG1P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P3 Gene

Localization for SMG1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P3 Gene

Pathways & Interactions for SMG1P3 Gene

SuperPathways for SMG1P3 Gene

No Data Available

Interacting Proteins for SMG1P3 Gene

Gene Ontology (GO) - Biological Process for SMG1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P3 Gene

Drugs & Compounds for SMG1P3 Gene

No Compound Related Data Available

Transcripts for SMG1P3 Gene

mRNA/cDNA for SMG1P3 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7
SP1: -
SP2: -

Relevant External Links for SMG1P3 Gene

GeneLoc Exon Structure for
SMG1P3
ECgene alternative splicing isoforms for
SMG1P3

Expression for SMG1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P3 Gene

Protein differential expression in normal tissues from HIPED for SMG1P3 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SMG1P3 Gene



Protein tissue co-expression partners for SMG1P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P3 Gene:

SMG1P3
genes like me logo Genes that share expression patterns with SMG1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P3 Gene

Orthologs for SMG1P3 Gene

Evolution for SMG1P3 Gene

ENSEMBL:
Gene Tree for SMG1P3 (if available)
TreeFam:
Gene Tree for SMG1P3 (if available)

No data available for Orthologs for SMG1P3 Gene

Paralogs for SMG1P3 Gene

No data available for Paralogs for SMG1P3 Gene

Variants for SMG1P3 Gene

Sequence variations from dbSNP and Humsavar for SMG1P3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000097398 -- 21,501,120(+) TTCAC(G/T)CAAGT intron-variant
rs1000302234 -- 21,502,147(+) AGGGC(C/T)CTGCG nc-transcript-variant
rs1000386757 -- 21,479,261(+) ACTCC(A/G)GCCTG intron-variant
rs1000909375 -- 21,489,694(+) AAGGT(C/T)AGCCA intron-variant
rs1000923285 -- 21,466,742(+) CAGGT(C/G)CTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P3 Gene

Variant ID Type Subtype PubMed ID
nsv978108 CNV duplication 23825009
nsv978037 CNV duplication 23825009
nsv9397 CNV gain+loss 18304495
nsv9396 CNV gain 18304495
nsv827584 CNV gain 20364138
nsv509606 CNV insertion 20534489
nsv436835 CNV insertion 17901297
nsv433438 CNV gain 18776910
nsv433437 CNV gain 18776910
nsv428322 CNV gain 18775914
nsv1160372 CNV duplication 26073780
nsv1152437 CNV duplication 26484159
nsv1150881 CNV duplication 26484159
nsv1139646 CNV duplication 24896259
nsv1110272 CNV duplication 24896259
esv34235 CNV gain 17911159
esv33799 CNV loss 17666407
esv2758636 CNV gain+loss 17122850
esv25717 CNV gain+loss 19812545
dgv2801n100 CNV loss 25217958
dgv2800n100 CNV gain 25217958
dgv1316n106 CNV duplication 24896259

Relevant External Links for SMG1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P3 Gene

Disorders for SMG1P3 Gene

Relevant External Links for SMG1P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P3

No disorders were found for SMG1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P3 Gene

Publications for SMG1P3 Gene

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SMG1P3 Gene

Sources for SMG1P3 Gene

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