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Aliases for SMG1P3 Gene

Aliases for SMG1P3 Gene

  • SMG1 Pseudogene 3 2 3

External Ids for SMG1P3 Gene

Summaries for SMG1P3 Gene

GeneCards Summary for SMG1P3 Gene

SMG1P3 (SMG1 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P3 Gene

Genomics for SMG1P3 Gene

Genomic Location for SMG1P3 Gene

Chromosome:
16
Start:
21,446,683 bp from pter
End:
21,520,444 bp from pter
Size:
73,762 bases
Orientation:
Minus strand

Genomic View for SMG1P3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMG1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P3 Gene

No data available for Regulatory Elements for SMG1P3 Gene

Proteins for SMG1P3 Gene

Post-translational modifications for SMG1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P3 Gene

Domains & Families for SMG1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P3 Gene

Function for SMG1P3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P3 Gene

Localization for SMG1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG1P3 Gene

Pathways & Interactions for SMG1P3 Gene

SuperPathways for SMG1P3 Gene

No Data Available

Interacting Proteins for SMG1P3 Gene

Gene Ontology (GO) - Biological Process for SMG1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P3 Gene

Drugs & Compounds for SMG1P3 Gene

No Compound Related Data Available

Transcripts for SMG1P3 Gene

mRNA/cDNA for SMG1P3 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7
SP1: -
SP2: -

Relevant External Links for SMG1P3 Gene

GeneLoc Exon Structure for
SMG1P3
ECgene alternative splicing isoforms for
SMG1P3

Expression for SMG1P3 Gene

mRNA expression in normal human tissues for SMG1P3 Gene

Protein differential expression in normal tissues from HIPED for SMG1P3 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from for SMG1P3 Gene



genes like me logo Genes that share expression patterns with SMG1P3: view

Protein tissue co-expression partners for SMG1P3 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SMG1P3 Gene

Orthologs for SMG1P3 Gene

Evolution for SMG1P3 Gene

ENSEMBL:
Gene Tree for SMG1P3 (if available)
TreeFam:
Gene Tree for SMG1P3 (if available)

No data available for Orthologs for SMG1P3 Gene

Paralogs for SMG1P3 Gene

No data available for Paralogs for SMG1P3 Gene

Variants for SMG1P3 Gene

Sequence variations from dbSNP and Humsavar for SMG1P3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs42147 -- 21,498,246(-) AGTGT(C/T)TTAGG intron-variant
rs42378 -- 21,501,591(+) GGAGA(A/G)GCACT intron-variant
rs150324 -- 21,502,051(-) ACCCG(A/C/G/T)AACGG nc-transcript-variant
rs173830 -- 21,502,557(+) GGGGG(G/T)GGGGG upstream-variant-2KB
rs211538 -- 21,487,231(+) CTGTT(A/G)AAGAA intron-variant

Relevant External Links for SMG1P3 Gene

HapMap Linkage Disequilibrium report
SMG1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMG1P3 Gene

Disorders for SMG1P3 Gene

Relevant External Links for SMG1P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P3
genes like me logo Genes that share disorders with SMG1P3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P3 Gene

Publications for SMG1P3 Gene

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M. … Tsurudome M. (Int. J. Biochem. Cell Biol. 2002) 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for SMG1P3 Gene

Sources for SMG1P3 Gene

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