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Aliases for SMG1P3 Gene

Aliases for SMG1P3 Gene

  • SMG1 Pseudogene 3 2 3 5
  • SMG1P3, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 3 2

External Ids for SMG1P3 Gene

Summaries for SMG1P3 Gene

GeneCards Summary for SMG1P3 Gene

SMG1P3 (SMG1 Pseudogene 3) is a Pseudogene.

Additional gene information for SMG1P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P3 Gene

Genomics for SMG1P3 Gene

GeneHancer (GH) Regulatory Elements for SMG1P3 Gene

Promoters and enhancers for SMG1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I021517 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 562.8 +0.2 215 4.7 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SMG1P3 SLC7A5P2 THUMPD1 RRN3P1 NPIPB4 NPIPB3 NPIPB5 C16orf52 SMG1P1 ENSG00000260635
GH16I021819 Promoter/Enhancer 1.5 Ensembl ENCODE 108 -299.9 -299857 1.8 HDGF SMAD1 ZFP64 SIN3A FEZF1 ZNF2 YY1 ZNF213 ZNF302 ZNF207 RRN3P1 NPIPB4 NPIPB5 NPIPB3 SMG1P3 ENSG00000260635 SMG1P4 SMG1P1 POLR3E ENSG00000260905
GH16I022296 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 54.4 -777.3 -777338 3.2 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 POLR3E TRL-AAG2-4 C16orf52 NPIPB4 SMG1P3 NPIPB3 RRN3P1 NPIPB5 SMG1P1 SMG1P4
GH16I022006 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 40.5 -487.8 -487813 2.8 PKNOX1 ATF1 FOXA2 ARID4B SIN3A ZNF48 YY1 ZNF213 ZNF548 ATF7 C16orf52 ENSG00000275445 GC16P022007 SMG1P4 SMG1P1 SMG1P3 NPIPB4 NPIPB5 NPIPB3 ENSG00000260635
GH16I021950 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 31.9 -432.3 -432261 3.9 CLOCK DMAP1 YBX1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC MEF2D ENSG00000274460 GC16M021951 UQCRC2 ENSG00000260635 SMG1P1 SMG1P4 SMG1P3 NPIPB4 NPIPB5 NPIPB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMG1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMG1P3 Gene

Genomic Locations for SMG1P3 Gene
chr16:21,446,683-21,520,444
(GRCh38/hg38)
Size:
73,762 bases
Orientation:
Minus strand
chr16:21,458,004-21,531,765
(GRCh37/hg19)

Genomic View for SMG1P3 Gene

Genes around SMG1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P3 Gene

Proteins for SMG1P3 Gene

Post-translational modifications for SMG1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P3 Gene

Domains & Families for SMG1P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P3 Gene

Function for SMG1P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P3 Gene

Localization for SMG1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMG1P3 Gene

Pathways & Interactions for SMG1P3 Gene

SuperPathways for SMG1P3 Gene

No Data Available

Interacting Proteins for SMG1P3 Gene

Gene Ontology (GO) - Biological Process for SMG1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P3 Gene

Drugs & Compounds for SMG1P3 Gene

No Compound Related Data Available

Transcripts for SMG1P3 Gene

mRNA/cDNA for SMG1P3 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7
SP1: -
SP2: -

Relevant External Links for SMG1P3 Gene

GeneLoc Exon Structure for
SMG1P3
ECgene alternative splicing isoforms for
SMG1P3

Expression for SMG1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P3 Gene

Protein differential expression in normal tissues from HIPED for SMG1P3 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for SMG1P3 Gene



Protein tissue co-expression partners for SMG1P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P3 Gene:

SMG1P3
genes like me logo Genes that share expression patterns with SMG1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P3 Gene

Orthologs for SMG1P3 Gene

Evolution for SMG1P3 Gene

ENSEMBL:
Gene Tree for SMG1P3 (if available)
TreeFam:
Gene Tree for SMG1P3 (if available)

No data available for Orthologs for SMG1P3 Gene

Paralogs for SMG1P3 Gene

No data available for Paralogs for SMG1P3 Gene

Variants for SMG1P3 Gene

Sequence variations from dbSNP and Humsavar for SMG1P3 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000097398 -- 21,501,120(-) T/G intron_variant
rs1000302234 -- 21,502,147(-) C/T non_coding_transcript_variant
rs1000386757 -- 21,479,261(-) A/G intron_variant
rs1000909375 -- 21,489,694(-) T/C intron_variant
rs1000923285 -- 21,466,742(-) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMG1P3 Gene

Variant ID Type Subtype PubMed ID
dgv1316n106 CNV duplication 24896259
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
esv25717 CNV gain+loss 19812545
esv2758636 CNV gain+loss 17122850
esv33799 CNV loss 17666407
esv34235 CNV gain 17911159
nsv1110272 CNV duplication 24896259
nsv1139646 CNV duplication 24896259
nsv1150881 CNV duplication 26484159
nsv1152437 CNV duplication 26484159
nsv1160372 CNV duplication 26073780
nsv428322 CNV gain 18775914
nsv433437 CNV gain 18776910
nsv433438 CNV gain 18776910
nsv436835 CNV insertion 17901297
nsv509606 CNV insertion 20534489
nsv827584 CNV gain 20364138
nsv9396 CNV gain 18304495
nsv9397 CNV gain+loss 18304495
nsv978037 CNV duplication 23825009
nsv978108 CNV duplication 23825009

Additional Variant Information for SMG1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P3 Gene

Disorders for SMG1P3 Gene

Additional Disease Information for SMG1P3

No disorders were found for SMG1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P3 Gene

Publications for SMG1P3 Gene

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M … Tsurudome M (The international journal of biochemistry & cell biology 2002) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SMG1P3 Gene

Sources for SMG1P3 Gene

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