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Aliases for SMG1P2 Gene

Aliases for SMG1P2 Gene

  • SMG1P2, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 2 2 3 5
  • SMG1 Pseudogene 2 2

External Ids for SMG1P2 Gene

Summaries for SMG1P2 Gene

GeneCards Summary for SMG1P2 Gene

SMG1P2 (SMG1P2, Nonsense Mediated MRNA Decay Associated PI3K Related Kinase Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P2 Gene

Genomics for SMG1P2 Gene

Regulatory Elements for SMG1P2 Gene

Enhancers for SMG1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G030052 1.5 ENCODE dbSUPER 75.8 -459.2 -459239 3.1 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 ZNF747 SMG1P2 ZNF764 ENSG00000198106 BCL7C NPIPB13 PRR14 ZNF785 CDIPT YPEL3
GH16G030555 1.5 ENCODE dbSUPER 74 -963.1 -963106 4.2 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 ENSG00000260267 ZNF764 SMG1P2 NPIPB13 ENSG00000260304 BCL7C PRR14 CDIPT ZNF785 ZNF689
GH16G030566 2.1 FANTOM5 Ensembl ENCODE dbSUPER 49.7 -974.9 -974909 6.0 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 ENSG00000260267 ZNF747 NPIPB13 ENSG00000260304 SMG1P2 BCL7C ZNF764 ZNF785 CDIPT PRR14
GH16G030367 2 FANTOM5 Ensembl ENCODE dbSUPER 36.9 -781.1 -781067 17.0 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 MYLPF SMG1P2 ZNF785 ENSG00000260304 ZNF747 NPIPB13 PRR14 ZNF764 BCL7C ZNF48
GH16G029803 1.5 ENCODE dbSUPER 37.5 -213.5 -213478 10.3 MLX CREB3L1 AGO1 ZFP64 DMAP1 YBX1 FEZF1 YY1 SLC30A9 ZNF416 ENSG00000260853 ENSG00000260367 NFATC2IP SMG1P2 ZNF764 ZNF785 ENSG00000261766 ZNF747 PRR14 RRN3P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMG1P2 on UCSC Golden Path with GeneCards custom track

Promoters for SMG1P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085063 366 2401 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF143 ZNF207 FOS ZNF263 SP3

Genomic Location for SMG1P2 Gene

Chromosome:
16
Start:
29,527,568 bp from pter
End:
29,594,966 bp from pter
Size:
67,399 bases
Orientation:
Minus strand

Genomic View for SMG1P2 Gene

Genes around SMG1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMG1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMG1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P2 Gene

Proteins for SMG1P2 Gene

Post-translational modifications for SMG1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P2 Gene

Domains & Families for SMG1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMG1P2 Gene

Function for SMG1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMG1P2 Gene

Localization for SMG1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMG1P2 Gene

Pathways & Interactions for SMG1P2 Gene

SuperPathways for SMG1P2 Gene

No Data Available

Interacting Proteins for SMG1P2 Gene

Gene Ontology (GO) - Biological Process for SMG1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMG1P2 Gene

Drugs & Compounds for SMG1P2 Gene

No Compound Related Data Available

Transcripts for SMG1P2 Gene

mRNA/cDNA for SMG1P2 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P2 Gene

No ASD Table

Relevant External Links for SMG1P2 Gene

GeneLoc Exon Structure for
SMG1P2
ECgene alternative splicing isoforms for
SMG1P2

Expression for SMG1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMG1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMG1P2 Gene:

SMG1P2
genes like me logo Genes that share expression patterns with SMG1P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMG1P2 Gene

Orthologs for SMG1P2 Gene

Evolution for SMG1P2 Gene

ENSEMBL:
Gene Tree for SMG1P2 (if available)
TreeFam:
Gene Tree for SMG1P2 (if available)

No data available for Orthologs for SMG1P2 Gene

Paralogs for SMG1P2 Gene

No data available for Paralogs for SMG1P2 Gene

Variants for SMG1P2 Gene

Sequence variations from dbSNP and Humsavar for SMG1P2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000146294 -- 29,588,721(+) AATTT(A/G)TAAAG intron-variant
rs1000174362 -- 29,594,402(+) GGCTG(A/G)AGTTT intron-variant
rs1000338120 -- 29,554,410(+) GCAAG(A/G)CTTAC intron-variant
rs1000343761 -- 29,598,947(+) ACTTC(C/G)AACAT intron-variant, downstream-variant-500B
rs1000417243 -- 29,598,717(+) GAAGT(C/T)AAAAA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SMG1P2 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2658775 CNV deletion 23128226
esv2758641 CNV gain 17122850
esv2758642 CNV gain 17122850
esv29892 CNV gain 19812545
esv3322933 CNV duplication 20981092
esv3348348 CNV duplication 20981092
esv3368598 CNV duplication 20981092
esv3369316 CNV duplication 20981092
esv3369844 CNV duplication 20981092
esv3386415 CNV duplication 20981092
esv3409521 CNV duplication 20981092
esv3427338 CNV duplication 20981092
esv3638365 CNV loss 21293372
nsv1056249 CNV gain 25217958
nsv1078393 CNV duplication 25765185
nsv1139652 CNV duplication 24896259
nsv1141284 CNV duplication 24896259
nsv1146152 CNV duplication 26484159
nsv1148121 CNV duplication 26484159
nsv1150202 CNV duplication 26484159
nsv498862 CNV loss 21111241
nsv9428 CNV loss 18304495
nsv9433 CNV loss 18304495
nsv953801 CNV duplication 24416366
nsv954512 CNV deletion 24416366
nsv978058 CNV duplication 23825009
nsv978128 CNV duplication 23825009
nsv978131 CNV duplication 23825009
nsv984413 CNV duplication 23825009

Relevant External Links for SMG1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMG1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMG1P2 Gene

Disorders for SMG1P2 Gene

Relevant External Links for SMG1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMG1P2

No disorders were found for SMG1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMG1P2 Gene

Publications for SMG1P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M. … Tsurudome M. (Int. J. Biochem. Cell Biol. 2002) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SMG1P2 Gene

Sources for SMG1P2 Gene

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