Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SMG1P1 Gene

Aliases for SMG1P1 Gene

  • SMG1 Pseudogene 1 2 3
  • Smg-1 Homolog, Phosphatidylinositol 3-Kinase-Related Kinase Pseudogene 1 2

External Ids for SMG1P1 Gene

Summaries for SMG1P1 Gene

GeneCards Summary for SMG1P1 Gene

SMG1P1 (SMG1 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMG1P1 Gene

Genomics for SMG1P1 Gene

Genomic Location for SMG1P1 Gene

Start:
22,437,008 bp from pter
End:
22,492,220 bp from pter
Size:
55,213 bases
Orientation:
Plus strand

Genomic View for SMG1P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMG1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMG1P1 Gene

No data available for Regulatory Elements for SMG1P1 Gene

Proteins for SMG1P1 Gene

Post-translational modifications for SMG1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMG1P1 Gene

Domains for SMG1P1 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SMG1P1 Gene

Function for SMG1P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMG1P1 Gene

Localization for SMG1P1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SMG1P1 Gene

Pathways for SMG1P1 Gene

SuperPathways for SMG1P1 Gene

No Data Available

Interacting Proteins for SMG1P1 Gene

Gene Ontology (GO) - Biological Process for SMG1P1 Gene

None

No data available for Pathways by source for SMG1P1 Gene

Transcripts for SMG1P1 Gene

mRNA/cDNA for SMG1P1 Gene

(1) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMG1P1 Gene

No ASD Table

Relevant External Links for SMG1P1 Gene

GeneLoc Exon Structure for
SMG1P1
ECgene alternative splicing isoforms for
SMG1P1

Expression for SMG1P1 Gene

mRNA expression in normal human tissues for SMG1P1 Gene

genes like me logo Genes that share expressions with SMG1P1: view

Orthologs for SMG1P1 Gene

Evolution for SMG1P1 Gene

ENSEMBL:
Gene Tree for SMG1P1 (if available)
TreeFam:
Gene Tree for SMG1P1 (if available)

No data available for Orthologs for SMG1P1 Gene

Paralogs for SMG1P1 Gene

No data available for Paralogs for SMG1P1 Gene

Variants for SMG1P1 Gene

Sequence variations from dbSNP and Humsavar for SMG1P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs42145 -- 22,441,388(-) TTGAA(C/T)GCCTT intron-variant
rs211545 -- 22,451,116(-) AAGCA(A/T)TTCCA intron-variant
rs211549 -- 22,450,740(-) AGAAA(C/G)GGTGA intron-variant
rs530361 -- 22,459,393(+) TGTCA(A/T)ATCTT nc-transcript-variant
rs554237 -- 22,459,689(+) gcaca(A/G)tcata intron-variant

Relevant External Links for SMG1P1 Gene

HapMap Linkage Disequilibrium report
SMG1P1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SMG1P1 Gene

Disorders for SMG1P1 Gene

No disorders were found for SMG1P1 Gene.

No data available for UniProtKB/Swiss-Prot for SMG1P1 Gene

Publications for SMG1P1 Gene

  1. [Screening of binding proteins to interferon-alpha promoter DNA by phage display technique]. (PMID: 16042889) Qu J.H. … Dai J.Z. (Zhonghua Gan Zang Bing Za Zhi 2005) 23
  2. Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PMID: 9039502) Nagase T. … Nomura N. (DNA Res. 1996) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for SMG1P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SMG1P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SMG1P1
    • Block miRNA regulation of SMG1P1 using miScript Target Protectors

    Sources for SMG1P1 Gene

    Back to Top

    Content