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Aliases for SMCR5 Gene

Subcategory (RNA class) for SMCR5 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SMCR5 Gene

  • Smith-Magenis Syndrome Chromosome Region, Candidate 5 (Non-Protein Coding) 2 3
  • Smith-Magenis Syndrome Chromosome Region, Candidate 5 2
  • Non-Protein Coding RNA 34 2
  • NCRNA00034 3

External Ids for SMCR5 Gene

ORGUL Members for SMCR5 Gene

Previous GeneCards Identifiers for SMCR5 Gene

  • GC17M017997
  • GC17M019052
  • GC17M017623
  • GC17M017880
  • GC17M017882
  • GC17M017620
  • GC17U901068
  • GC17M017680

Summaries for SMCR5 Gene

GeneCards Summary for SMCR5 Gene

SMCR5 (Smith-Magenis Syndrome Chromosome Region, Candidate 5 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with SMCR5 include smith-magenis syndrome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMCR5 Gene

Genomics for SMCR5 Gene

Regulatory Elements for SMCR5 Gene

Genomic Location for SMCR5 Gene

Chromosome:
17
Start:
17,776,686 bp from pter
End:
17,779,529 bp from pter
Size:
2,844 bases
Orientation:
Minus strand

Genomic View for SMCR5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMCR5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMCR5 Gene

Proteins for SMCR5 Gene

  • Protein details for SMCR5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TEV8-SMCR5_HUMAN
    Recommended name:
    Smith-Magenis syndrome chromosomal region candidate gene 5 protein
    Protein Accession:
    Q8TEV8

    Protein attributes for SMCR5 Gene

    Size:
    140 amino acids
    Molecular mass:
    15285 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMCR5 Gene

Proteomics data for SMCR5 Gene at MOPED

Post-translational modifications for SMCR5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMCR5 Gene

Domains & Families for SMCR5 Gene

Protein Domains for SMCR5 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SMCR5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMCR5: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SMCR5 Gene

Function for SMCR5 Gene

Phenotypes for SMCR5 Gene

GenomeRNAi human phenotypes for SMCR5:
genes like me logo Genes that share phenotypes with SMCR5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMCR5 Gene

Localization for SMCR5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMCR5 Gene

Pathways & Interactions for SMCR5 Gene

SuperPathways for SMCR5 Gene

No Data Available

Interacting Proteins for SMCR5 Gene

Gene Ontology (GO) - Biological Process for SMCR5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMCR5 Gene

Drugs & Compounds for SMCR5 Gene

No Compound Related Data Available

Transcripts for SMCR5 Gene

mRNA/cDNA for SMCR5 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMCR5 Gene

Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMCR5 Gene

No ASD Table

Relevant External Links for SMCR5 Gene

GeneLoc Exon Structure for
SMCR5
ECgene alternative splicing isoforms for
SMCR5

Expression for SMCR5 Gene

mRNA expression in normal human tissues for SMCR5 Gene

mRNA expression in normal human tissues for SMCR5 Gene

SOURCE GeneReport for Unigene cluster for SMCR5 Gene Hs.352643

mRNA Expression by UniProt/SwissProt for SMCR5 Gene

Q8TEV8-SMCR5_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expression patterns with SMCR5: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for SMCR5 Gene

Orthologs for SMCR5 Gene

Evolution for SMCR5 Gene

ENSEMBL:
Gene Tree for SMCR5 (if available)
TreeFam:
Gene Tree for SMCR5 (if available)

No data available for Orthologs for SMCR5 Gene

Paralogs for SMCR5 Gene

No data available for Paralogs for SMCR5 Gene

Variants for SMCR5 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMCR5 Gene

Variant ID Type Subtype PubMed ID
nsv155 OTHER Inversion 15895083
nsv499114 OTHER Inversion 21111241
nsv907748 CNV Loss 21882294
dgv3072n71 CNV Loss 21882294
nsv833385 CNV Loss 17160897
dgv3073n71 CNV Loss 21882294
nsv522668 CNV Loss 19592680
dgv3074n71 CNV Loss 21882294
dgv3075n71 CNV Loss 21882294
dgv3076n71 CNV Loss 21882294
nsv907766 CNV Loss 21882294

Relevant External Links for SMCR5 Gene

HapMap Linkage Disequilibrium report
SMCR5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for SMCR5 Gene

Disorders for SMCR5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMCR5 Gene - From: GeneCards

Disorder Aliases PubMed IDs
smith-magenis syndrome
  • smith magenis syndrome
- elite association
Search SMCR5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for SMCR5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMCR5
genes like me logo Genes that share disorders with SMCR5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMCR5 Gene

Publications for SMCR5 Gene

  1. Genes in a refined Smith-Magenis syndrome critical deletion interval on chromosome 17p11.2 and the syntenic region of the mouse. (PMID: 11997338) Bi W. … Lupski J.R. (Genome Res. 2002) 2 67

Products for SMCR5 Gene

Sources for SMCR5 Gene

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