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Aliases for SMCR5 Gene

Subcategory (RNA class) for SMCR5 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SMCR5 Gene

  • Smith-Magenis Syndrome Chromosome Region, Candidate 5 (Non-Protein Coding) 2 3
  • Smith-Magenis Syndrome Chromosome Region, Candidate 5 2
  • Non-Protein Coding RNA 34 2
  • NCRNA00034 3

External Ids for SMCR5 Gene

ORGUL Members for SMCR5 Gene

Previous GeneCards Identifiers for SMCR5 Gene

  • GC17M017997
  • GC17M019052
  • GC17M017623
  • GC17M017880
  • GC17M017882
  • GC17M017620
  • GC17U901068
  • GC17M017680

Summaries for SMCR5 Gene

GeneCards Summary for SMCR5 Gene

SMCR5 (Smith-Magenis Syndrome Chromosome Region, Candidate 5 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with SMCR5 include smith-magenis syndrome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMCR5 Gene

Genomics for SMCR5 Gene

Regulatory Elements for SMCR5 Gene

Genomic Location for SMCR5 Gene

Start:
17,776,686 bp from pter
End:
17,779,529 bp from pter
Size:
2,844 bases
Orientation:
Minus strand

Genomic View for SMCR5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMCR5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMCR5 Gene

Proteins for SMCR5 Gene

  • Protein details for SMCR5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TEV8-SMCR5_HUMAN
    Recommended name:
    Smith-Magenis syndrome chromosomal region candidate gene 5 protein
    Protein Accession:
    Q8TEV8
    Secondary Accessions:

    Protein attributes for SMCR5 Gene

    Size:
    140 amino acids
    Molecular mass:
    15285 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMCR5 Gene

Proteomics data for SMCR5 Gene at MOPED

Post-translational modifications for SMCR5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMCR5 Gene

Domains for SMCR5 Gene

Gene Families for SMCR5 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for SMCR5 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SMCR5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMCR5: view

No data available for UniProtKB/Swiss-Prot for SMCR5 Gene

Function for SMCR5 Gene

Phenotypes for SMCR5 Gene

GenomeRNAi human phenotypes for SMCR5:
genes like me logo Genes that share phenotypes with SMCR5: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMCR5 Gene

Localization for SMCR5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMCR5 Gene

Pathways for SMCR5 Gene

SuperPathways for SMCR5 Gene

No Data Available

Interacting Proteins for SMCR5 Gene

Gene Ontology (GO) - Biological Process for SMCR5 Gene

None

No data available for Pathways by source for SMCR5 Gene

Transcripts for SMCR5 Gene

mRNA/cDNA for SMCR5 Gene

(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMCR5 Gene

Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SMCR5

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SMCR5
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMCR5 Gene

No ASD Table

Relevant External Links for SMCR5 Gene

GeneLoc Exon Structure for
SMCR5
ECgene alternative splicing isoforms for
SMCR5

Expression for SMCR5 Gene

mRNA expression in normal human tissues for SMCR5 Gene

mRNA expression in normal human tissues for SMCR5 Gene

SOURCE GeneReport for Unigene cluster for SMCR5 Gene Hs.352643

mRNA Expression by UniProt/SwissProt for SMCR5 Gene

Q8TEV8-SMCR5_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expressions with SMCR5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for SMCR5 Gene

Orthologs for SMCR5 Gene

Evolution for SMCR5 Gene

ENSEMBL:
Gene Tree for SMCR5 (if available)
TreeFam:
Gene Tree for SMCR5 (if available)

No data available for Orthologs for SMCR5 Gene

Paralogs for SMCR5 Gene

No data available for Paralogs for SMCR5 Gene

Variants for SMCR5 Gene

Structural Variations from Database of Genomic Variants (DGV) for SMCR5 Gene

Variant ID Type Subtype PubMed ID
nsv155 OTHER Inversion 15895083
nsv499114 OTHER Inversion 21111241
nsv907748 CNV Loss 21882294
dgv3072n71 CNV Loss 21882294
nsv833385 CNV Loss 17160897
dgv3073n71 CNV Loss 21882294
nsv522668 CNV Loss 19592680
dgv3074n71 CNV Loss 21882294
dgv3075n71 CNV Loss 21882294
dgv3076n71 CNV Loss 21882294
nsv907766 CNV Loss 21882294

Relevant External Links for SMCR5 Gene

HapMap Linkage Disequilibrium report
SMCR5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SMCR5 Gene

Disorders for SMCR5 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for SMCR5 Gene including...

Search for SMCR5 Gene in MalaCards »
genes like me logo Genes that share disorders with SMCR5: view

No data available for UniProtKB/Swiss-Prot for SMCR5 Gene

Publications for SMCR5 Gene

  1. Genes in a refined Smith-Magenis syndrome critical deletion interval on chromosome 17p11.2 and the syntenic region of the mouse. (PMID: 11997338) Bi W. … Lupski J.R. (Genome Res. 2002) 2 3 4

Products for SMCR5 Gene

Sources for SMCR5 Gene

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