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Aliases for SMCO4P1 Gene

Aliases for SMCO4P1 Gene

  • Single-Pass Membrane Protein With Coiled-Coil Domains 4 Pseudogene 1 2 3 5

External Ids for SMCO4P1 Gene

Previous GeneCards Identifiers for SMCO4P1 Gene

  • GC17P042724

Summaries for SMCO4P1 Gene

GeneCards Summary for SMCO4P1 Gene

SMCO4P1 (Single-Pass Membrane Protein With Coiled-Coil Domains 4 Pseudogene 1) is a Pseudogene.

Additional gene information for SMCO4P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMCO4P1 Gene

Genomics for SMCO4P1 Gene

Regulatory Elements for SMCO4P1 Gene

Enhancers for SMCO4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H045143 1.8 FANTOM5 ENCODE dbSUPER 14.6 +502.7 502681 9 MLX FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ENSG00000262372 UBTF ASB16-AS1 TMUB2 ENSG00000224505 LINC02210 HEXIM1 EFTUD2 MAP3K14-AS1 ENSG00000260793
GH17H045157 1.4 ENCODE dbSUPER 14.6 +515.2 515182 5 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SSRP1 ENSG00000262372 UBTF TMUB2 ASB16-AS1 ENSG00000224505 MAP3K14-AS1 EFTUD2 ENSG00000267788 RN7SL405P LINC01180
GH17H045126 1.4 ENCODE dbSUPER 14.6 +484.8 484783 6 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ENSG00000262372 ASB16-AS1 UBTF TMUB2 ACBD4 LINC02210 ENSG00000224505 ENSG00000267788 RN7SL405P LINC01180
GH17H043664 1.3 Ensembl ENCODE 14.6 -977.2 -977223 6 HDGF PKNOX1 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 SLC30A9 SP3 ENSG00000267604 RN7SL507P LINC01180 SMCO4P1 MEIOC SOST RNU6-406P RNU6-1137P ETV4 MIR2117HG
GH17H044013 1.2 ENCODE 14.6 -630.6 -630566 1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A ENSG00000267604 TMEM101 MEOX1 RN7SL507P LINC01180 SMCO4P1 RN7SL405P ENSG00000267788 MPP2 MEIOC
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMCO4P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMCO4P1 Gene

Chromosome:
17
Start:
44,645,266 bp from pter
End:
44,646,418 bp from pter
Size:
1,153 bases
Orientation:
Plus strand

Genomic View for SMCO4P1 Gene

Genes around SMCO4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMCO4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMCO4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMCO4P1 Gene

Proteins for SMCO4P1 Gene

Post-translational modifications for SMCO4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMCO4P1 Gene

Domains & Families for SMCO4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMCO4P1 Gene

Function for SMCO4P1 Gene

Phenotypes From GWAS Catalog for SMCO4P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMCO4P1 Gene

Localization for SMCO4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMCO4P1 Gene

Pathways & Interactions for SMCO4P1 Gene

SuperPathways for SMCO4P1 Gene

No Data Available

Interacting Proteins for SMCO4P1 Gene

Gene Ontology (GO) - Biological Process for SMCO4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMCO4P1 Gene

Drugs & Compounds for SMCO4P1 Gene

No Compound Related Data Available

Transcripts for SMCO4P1 Gene

mRNA/cDNA for SMCO4P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMCO4P1 Gene

No ASD Table

Relevant External Links for SMCO4P1 Gene

GeneLoc Exon Structure for
SMCO4P1
ECgene alternative splicing isoforms for
SMCO4P1

Expression for SMCO4P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMCO4P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SMCO4P1 Gene:

SMCO4P1
genes like me logo Genes that share expression patterns with SMCO4P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMCO4P1 Gene

Orthologs for SMCO4P1 Gene

Evolution for SMCO4P1 Gene

ENSEMBL:
Gene Tree for SMCO4P1 (if available)
TreeFam:
Gene Tree for SMCO4P1 (if available)

No data available for Orthologs for SMCO4P1 Gene

Paralogs for SMCO4P1 Gene

No data available for Paralogs for SMCO4P1 Gene

Variants for SMCO4P1 Gene

Relevant External Links for SMCO4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMCO4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMCO4P1 Gene

Disorders for SMCO4P1 Gene

No disorders were found for SMCO4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMCO4P1 Gene

Publications for SMCO4P1 Gene

No publications were found for SMCO4P1 Gene.

Products for SMCO4P1 Gene

Sources for SMCO4P1 Gene

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