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Aliases for SMC5-AS1 Gene

Subcategory (RNA class) for SMC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMC5-AS1 Gene

  • SMC5 Antisense RNA 1 (Head To Head) 2 3 5
  • MAMDC2-AS2 3

External Ids for SMC5-AS1 Gene

Previous GeneCards Identifiers for SMC5-AS1 Gene

  • GC09M072809

Summaries for SMC5-AS1 Gene

GeneCards Summary for SMC5-AS1 Gene

SMC5-AS1 (SMC5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMC5-AS1 Gene

Genomics for SMC5-AS1 Gene

Regulatory Elements for SMC5-AS1 Gene

Promoters for SMC5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMC5-AS1 Gene

Chromosome:
9
Start:
70,193,997 bp from pter
End:
70,258,874 bp from pter
Size:
64,878 bases
Orientation:
Minus strand

Genomic View for SMC5-AS1 Gene

Genes around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMC5-AS1 Gene

Proteins for SMC5-AS1 Gene

Post-translational modifications for SMC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC5-AS1 Gene

Domains & Families for SMC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMC5-AS1 Gene

Function for SMC5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC5-AS1 Gene

Localization for SMC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMC5-AS1 Gene

Pathways & Interactions for SMC5-AS1 Gene

SuperPathways for SMC5-AS1 Gene

No Data Available

Interacting Proteins for SMC5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMC5-AS1 Gene

Drugs & Compounds for SMC5-AS1 Gene

No Compound Related Data Available

Transcripts for SMC5-AS1 Gene

mRNA/cDNA for SMC5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC5-AS1 Gene

No ASD Table

Relevant External Links for SMC5-AS1 Gene

GeneLoc Exon Structure for
SMC5-AS1
ECgene alternative splicing isoforms for
SMC5-AS1

Expression for SMC5-AS1 Gene

mRNA expression in normal human tissues for SMC5-AS1 Gene

genes like me logo Genes that share expression patterns with SMC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SMC5-AS1 Gene

Orthologs for SMC5-AS1 Gene

Evolution for SMC5-AS1 Gene

ENSEMBL:
Gene Tree for SMC5-AS1 (if available)
TreeFam:
Gene Tree for SMC5-AS1 (if available)

No data available for Orthologs for SMC5-AS1 Gene

Paralogs for SMC5-AS1 Gene

No data available for Paralogs for SMC5-AS1 Gene

Variants for SMC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMC5-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1180078 -- 70,248,622(+) gacct(C/T)cacct intron-variant
rs1180079 -- 70,249,077(+) ATGAA(C/T)GTGTG intron-variant
rs1180080 -- 70,250,407(+) tccaa(C/T)gcaca intron-variant
rs1180081 -- 70,251,082(+) ttttt(A/G)cattt intron-variant
rs1180082 -- 70,251,244(+) TACCA(A/C)GAAAT intron-variant

Relevant External Links for SMC5-AS1 Gene

HapMap Linkage Disequilibrium report
SMC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMC5-AS1 Gene

Disorders for SMC5-AS1 Gene

Relevant External Links for SMC5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMC5-AS1

No disorders were found for SMC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMC5-AS1 Gene

Publications for SMC5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SMC5-AS1 Gene

Sources for SMC5-AS1 Gene

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