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Aliases for SMC5-AS1 Gene

Subcategory (RNA class) for SMC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMC5-AS1 Gene

  • SMC5 Antisense RNA 1 (Head To Head) 2 3 5
  • MAMDC2-AS2 3

External Ids for SMC5-AS1 Gene

Previous GeneCards Identifiers for SMC5-AS1 Gene

  • GC09M072809

Summaries for SMC5-AS1 Gene

GeneCards Summary for SMC5-AS1 Gene

SMC5-AS1 (SMC5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMC5-AS1 Gene

Genomics for SMC5-AS1 Gene

Regulatory Elements for SMC5-AS1 Gene

Enhancers for SMC5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F070476 0.8 Ensembl ENCODE 34.5 -220.9 -220934 5.8 ZFP64 SIN3A RAD21 YY1 FOS CREM EGR2 ZNF202 ZBTB11 ZNF623 SMC5-AS1 SMC5 KLF9 PTAR1 LOC105376079 GC09P070531
GH09F070417 1.4 FANTOM5 Ensembl ENCODE 19 -161.2 -161199 5.7 PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 FOS SMC5-AS1 PTAR1 MAMDC2-AS1 KLF9 SMC5 LOC101927086 LOC105376079
GH09F070493 0.7 Ensembl 14.5 -235.7 -235727 2.4 ZNF680 ZFP64 ZBTB11 ZFP37 ZNF140 ZBTB8A REST ZNF623 ZNF518A ZNF781 SMC5-AS1 SMC5 KLF9 LOC105376079 GC09P070531
GH09F070052 1 Ensembl ENCODE 14.5 +204.5 204516 2.9 PKNOX1 ZNF680 HLF JUN ZNF140 RAD21 YY1 GATA3 JUND ATF3 SMC5 SMC5-AS1 MAMDC2-AS1 GC09M070050 PIR60342
GH09F070255 1.3 FANTOM5 ENCODE 12.6 +0.7 655 5.8 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 KLF13 SP3 SP5 SMC5 MAMDC2-AS1 SMC5-AS1 PTAR1 MAMDC2 RPL24P8 GC09M070097
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SMC5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001471055 -126 2801 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 KLF13 SP3 SP5

Genomic Location for SMC5-AS1 Gene

Chromosome:
9
Start:
70,193,997 bp from pter
End:
70,258,874 bp from pter
Size:
64,878 bases
Orientation:
Minus strand

Genomic View for SMC5-AS1 Gene

Genes around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMC5-AS1 Gene

Proteins for SMC5-AS1 Gene

Post-translational modifications for SMC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC5-AS1 Gene

Domains & Families for SMC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMC5-AS1 Gene

Function for SMC5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC5-AS1 Gene

Localization for SMC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMC5-AS1 Gene

Pathways & Interactions for SMC5-AS1 Gene

SuperPathways for SMC5-AS1 Gene

No Data Available

Interacting Proteins for SMC5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMC5-AS1 Gene

Transcripts for SMC5-AS1 Gene

mRNA/cDNA for SMC5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC5-AS1 Gene

No ASD Table

Relevant External Links for SMC5-AS1 Gene

GeneLoc Exon Structure for
SMC5-AS1
ECgene alternative splicing isoforms for
SMC5-AS1

Expression for SMC5-AS1 Gene

mRNA expression in normal human tissues for SMC5-AS1 Gene

genes like me logo Genes that share expression patterns with SMC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMC5-AS1 Gene

Orthologs for SMC5-AS1 Gene

Evolution for SMC5-AS1 Gene

ENSEMBL:
Gene Tree for SMC5-AS1 (if available)
TreeFam:
Gene Tree for SMC5-AS1 (if available)

No data available for Orthologs for SMC5-AS1 Gene

Paralogs for SMC5-AS1 Gene

No data available for Paralogs for SMC5-AS1 Gene

Variants for SMC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMC5-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10114529 -- 70,238,983(+) cctta(A/C/T)acaaa intron-variant
rs10114669 -- 70,254,486(+) aaaaa(A/C)tatat intron-variant
rs10117899 -- 70,227,811(+) GTTGA(C/T)CTATT intron-variant
rs10868741 -- 70,224,481(+) CTAGG(A/G)TGCCA intron-variant
rs10868742 -- 70,224,579(+) GAGAG(A/G)GCAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMC5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2675457 CNV deletion 23128226
esv3620575 CNV loss 21293372
nsv1047862 CNV gain 25217958
nsv6555 CNV insertion 18451855
nsv831615 CNV gain 17160897
nsv972757 CNV duplication 23825009

Relevant External Links for SMC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMC5-AS1 Gene

Disorders for SMC5-AS1 Gene

Relevant External Links for SMC5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMC5-AS1

No disorders were found for SMC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMC5-AS1 Gene

Publications for SMC5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SMC5-AS1 Gene

Sources for SMC5-AS1 Gene

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