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Aliases for SMC5-AS1 Gene

Subcategory (RNA class) for SMC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMC5-AS1 Gene

  • SMC5 Antisense RNA 1 (Head To Head) 2 3 5
  • MAMDC2-AS2 3

External Ids for SMC5-AS1 Gene

Previous GeneCards Identifiers for SMC5-AS1 Gene

  • GC09M072809

Summaries for SMC5-AS1 Gene

GeneCards Summary for SMC5-AS1 Gene

SMC5-AS1 (SMC5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMC5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMC5-AS1 Gene

Genomics for SMC5-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMC5-AS1 Gene

Promoters and enhancers for SMC5-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I070255 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 562.6 +0.7 654 5.8 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B ZNF766 SMC5 SMC5-AS1 PTAR1 MAMDC2-AS1 MAMDC2 RPL24P8 GC09M070097
GH09I070409 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.1 -153.6 -153629 6.6 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 KLF9 SMC5 SMC5-AS1 GC09P070383
GH09I070417 Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -161.3 -161263 5.6 CLOCK ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC MEF2D LOC101927086 SMC5 SMC5-AS1 PTAR1 MAMDC2-AS1 KLF9 LOC105376079
GH09I069306 Enhancer 0.9 Ensembl ENCODE 11.4 +950.8 950816 2.8 USF1 BACH1 PYGO2 ZBTB40 TEAD3 POLR2A NFE2 ZNF639 STAT1 RFX1 BANCR SMC5 PTAR1 FAM122A SMC5-AS1 PGM5-AS1 LOC105376070 FAM189A2
GH09I070483 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 4.3 -226.0 -225972 3.4 HDGF PKNOX1 SMAD1 ATF1 ARNT ARID4B NCOA2 TCF12 GATA2 ZNF143 KLF9 SMC5-AS1 LOC105376079 GC09P070531 LOC101927086
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMC5-AS1 Gene

Genomic Locations for SMC5-AS1 Gene
chr9:70,193,997-70,258,874
(GRCh38/hg38)
Size:
64,878 bases
Orientation:
Minus strand
chr9:72,808,913-72,873,790
(GRCh37/hg19)

Genomic View for SMC5-AS1 Gene

Genes around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMC5-AS1 Gene

Proteins for SMC5-AS1 Gene

Post-translational modifications for SMC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC5-AS1 Gene

Domains & Families for SMC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMC5-AS1 Gene

Function for SMC5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC5-AS1 Gene

Localization for SMC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMC5-AS1 Gene

Pathways & Interactions for SMC5-AS1 Gene

SuperPathways for SMC5-AS1 Gene

No Data Available

Interacting Proteins for SMC5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMC5-AS1 Gene

Drugs & Compounds for SMC5-AS1 Gene

No Compound Related Data Available

Transcripts for SMC5-AS1 Gene

mRNA/cDNA for SMC5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC5-AS1 Gene

No ASD Table

Relevant External Links for SMC5-AS1 Gene

GeneLoc Exon Structure for
SMC5-AS1
ECgene alternative splicing isoforms for
SMC5-AS1

Expression for SMC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMC5-AS1 Gene

genes like me logo Genes that share expression patterns with SMC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMC5-AS1 Gene

Orthologs for SMC5-AS1 Gene

Evolution for SMC5-AS1 Gene

ENSEMBL:
Gene Tree for SMC5-AS1 (if available)
TreeFam:
Gene Tree for SMC5-AS1 (if available)

No data available for Orthologs for SMC5-AS1 Gene

Paralogs for SMC5-AS1 Gene

No data available for Paralogs for SMC5-AS1 Gene

Variants for SMC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMC5-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000158071 -- 70,257,148(-) G/T intron_variant
rs1000258687 -- 70,248,701(-) C/T intron_variant
rs1000286880 -- 70,227,957(-) T/C intron_variant
rs1000313405 -- 70,220,465(-) T/C intron_variant
rs1000411778 -- 70,254,693(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SMC5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2675457 CNV deletion 23128226
esv3620575 CNV loss 21293372
nsv1047862 CNV gain 25217958
nsv6555 CNV insertion 18451855
nsv831615 CNV gain 17160897
nsv972757 CNV duplication 23825009

Additional Variant Information for SMC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMC5-AS1 Gene

Disorders for SMC5-AS1 Gene

Additional Disease Information for SMC5-AS1

No disorders were found for SMC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMC5-AS1 Gene

Publications for SMC5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SMC5-AS1 Gene

Sources for SMC5-AS1 Gene

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