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Aliases for SMC5-AS1 Gene

Subcategory (RNA class) for SMC5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMC5-AS1 Gene

  • SMC5 Antisense RNA 1 (Head To Head) 2 3 5
  • MAMDC2-AS2 3

External Ids for SMC5-AS1 Gene

Previous GeneCards Identifiers for SMC5-AS1 Gene

  • GC09M072809

Summaries for SMC5-AS1 Gene

GeneCards Summary for SMC5-AS1 Gene

SMC5-AS1 (SMC5 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMC5-AS1 Gene

Genomics for SMC5-AS1 Gene

Regulatory Elements for SMC5-AS1 Gene

Enhancers for SMC5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G070476 1.4 Ensembl ENCODE dbSUPER 20.1 -220.9 -220934 5.8 NFIB ZFP64 SIN3A RAD21 YY1 GATA2 FOS CREM EGR2 ZNF202 SMC5-AS1 KLF9 MAMDC2 SMC5 RPL24P8 PTAR1 LOC105376079 GC09P070531
GH09G070419 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -161.3 -161263 5.6 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 SMC5-AS1 MAMDC2-AS1 KLF9 SMC5 LOC101927086 LOC105376079
GH09G070409 1.8 FANTOM5 ENCODE dbSUPER 11.1 -153.6 -153629 6.6 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SMC5-AS1 KLF9 GC09P070383
GH09G070611 0.8 dbSUPER 20 -352.9 -352878 0.6 ZFP64 ZNF140 ZNF266 ZNF101 ZNF697 ZNF433 ZBTB11 ZNF426 REST ZBTB8A SMC5-AS1 MAMDC2 SMC5 KLF9 RPL24P8 PTAR1 APBA1 GC09P070607 GC09P070646
GH09G070402 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.6 -147.0 -147015 6.2 FOXA2 ATF1 ARID4B SIN3A YY1 FOS JUNB REST TBX21 ZNF592 MAMDC2-AS1 SMC5-AS1 KLF9 GC09P070383
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SMC5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000235699 -126 2001 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF143 ZNF207

Genomic Location for SMC5-AS1 Gene

Chromosome:
9
Start:
70,193,997 bp from pter
End:
70,258,874 bp from pter
Size:
64,878 bases
Orientation:
Minus strand

Genomic View for SMC5-AS1 Gene

Genes around SMC5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMC5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMC5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMC5-AS1 Gene

Proteins for SMC5-AS1 Gene

Post-translational modifications for SMC5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMC5-AS1 Gene

Domains & Families for SMC5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMC5-AS1 Gene

Function for SMC5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMC5-AS1 Gene

Localization for SMC5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMC5-AS1 Gene

Pathways & Interactions for SMC5-AS1 Gene

SuperPathways for SMC5-AS1 Gene

No Data Available

Interacting Proteins for SMC5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMC5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMC5-AS1 Gene

Transcripts for SMC5-AS1 Gene

mRNA/cDNA for SMC5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMC5-AS1 Gene

No ASD Table

Relevant External Links for SMC5-AS1 Gene

GeneLoc Exon Structure for
SMC5-AS1
ECgene alternative splicing isoforms for
SMC5-AS1

Expression for SMC5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMC5-AS1 Gene

genes like me logo Genes that share expression patterns with SMC5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMC5-AS1 Gene

Orthologs for SMC5-AS1 Gene

Evolution for SMC5-AS1 Gene

ENSEMBL:
Gene Tree for SMC5-AS1 (if available)
TreeFam:
Gene Tree for SMC5-AS1 (if available)

No data available for Orthologs for SMC5-AS1 Gene

Paralogs for SMC5-AS1 Gene

No data available for Paralogs for SMC5-AS1 Gene

Variants for SMC5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMC5-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000158071 -- 70,257,148(+) AGGGA(G/T)GCAGA intron-variant, upstream-variant-2KB
rs1000258687 -- 70,248,701(+) CCCGA(C/T)TAATT intron-variant
rs1000286880 -- 70,227,957(+) TCATA(C/T)AAGCT intron-variant
rs1000313405 -- 70,220,465(+) CCAAA(C/T)GATGC intron-variant
rs1000411778 -- 70,254,693(+) AATTA(C/T)AAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMC5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2675457 CNV deletion 23128226
esv3620575 CNV loss 21293372
nsv1047862 CNV gain 25217958
nsv6555 CNV insertion 18451855
nsv831615 CNV gain 17160897
nsv972757 CNV duplication 23825009

Relevant External Links for SMC5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMC5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMC5-AS1 Gene

Disorders for SMC5-AS1 Gene

Relevant External Links for SMC5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMC5-AS1

No disorders were found for SMC5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMC5-AS1 Gene

Publications for SMC5-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SMC5-AS1 Gene

Sources for SMC5-AS1 Gene

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