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Aliases for SMARCA5-AS1 Gene

Subcategory (RNA class) for SMARCA5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMARCA5-AS1 Gene

  • SMARCA5 Antisense RNA 1 2 3 5
  • SMARCA5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SMARCA5-AS1 Gene

Previous GeneCards Identifiers for SMARCA5-AS1 Gene

  • GC04M144435

Summaries for SMARCA5-AS1 Gene

GeneCards Summary for SMARCA5-AS1 Gene

SMARCA5-AS1 (SMARCA5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMARCA5-AS1 Gene

Genomics for SMARCA5-AS1 Gene

Regulatory Elements for SMARCA5-AS1 Gene

Enhancers for SMARCA5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G143512 1.4 ENCODE dbSUPER 0.7 +0.5 548 3.4 HDGF CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 KLF13 GUSBP5 SMARCA5 SMARCA5-AS1
GH04G143555 0.6 ENCODE 0.3 -40.3 -40337 0.3 JUNB CBX5 POLR2A IKZF1 SCRT2 NBN ETV6 RELB GUSBP5 LOC101927636 ENSG00000248924 SMARCA5-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMARCA5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SMARCA5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000174152 337 3401 HDGF CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 KLF13

Genomic Location for SMARCA5-AS1 Gene

Chromosome:
4
Start:
143,513,472 bp from pter
End:
143,514,837 bp from pter
Size:
1,366 bases
Orientation:
Minus strand

Genomic View for SMARCA5-AS1 Gene

Genes around SMARCA5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMARCA5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMARCA5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMARCA5-AS1 Gene

Proteins for SMARCA5-AS1 Gene

Post-translational modifications for SMARCA5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMARCA5-AS1 Gene

Domains & Families for SMARCA5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMARCA5-AS1 Gene

Function for SMARCA5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMARCA5-AS1 Gene

Localization for SMARCA5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMARCA5-AS1 Gene

Pathways & Interactions for SMARCA5-AS1 Gene

SuperPathways for SMARCA5-AS1 Gene

No Data Available

Interacting Proteins for SMARCA5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMARCA5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMARCA5-AS1 Gene

Drugs & Compounds for SMARCA5-AS1 Gene

No Compound Related Data Available

Transcripts for SMARCA5-AS1 Gene

mRNA/cDNA for SMARCA5-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMARCA5-AS1 Gene

SMARCA5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMARCA5-AS1 Gene

No ASD Table

Relevant External Links for SMARCA5-AS1 Gene

GeneLoc Exon Structure for
SMARCA5-AS1
ECgene alternative splicing isoforms for
SMARCA5-AS1

Expression for SMARCA5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMARCA5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SMARCA5-AS1 Gene:

Hs.707570
genes like me logo Genes that share expression patterns with SMARCA5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMARCA5-AS1 Gene

Orthologs for SMARCA5-AS1 Gene

Evolution for SMARCA5-AS1 Gene

ENSEMBL:
Gene Tree for SMARCA5-AS1 (if available)
TreeFam:
Gene Tree for SMARCA5-AS1 (if available)

No data available for Orthologs for SMARCA5-AS1 Gene

Paralogs for SMARCA5-AS1 Gene

No data available for Paralogs for SMARCA5-AS1 Gene

Variants for SMARCA5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMARCA5-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1001237299 -- 143,514,470(+) TTCCA(C/T)CAAAC intron-variant, nc-transcript-variant
rs1001573493 -- 143,515,153(+) ATGAG(A/T)CTTGA intron-variant, upstream-variant-2KB
rs1001940757 -- 143,514,940(+) ACAGT(A/G)CTGAG intron-variant, upstream-variant-2KB
rs1002307440 -- 143,516,577(+) CTTAA(C/T)AATGA intron-variant, upstream-variant-2KB
rs1002907859 -- 143,515,537(+) CTTCT(C/T)AAAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SMARCA5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759288 CNV gain+loss 17122850
nsv830103 CNV loss 17160897

Relevant External Links for SMARCA5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMARCA5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMARCA5-AS1 Gene

Disorders for SMARCA5-AS1 Gene

Relevant External Links for SMARCA5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMARCA5-AS1

No disorders were found for SMARCA5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMARCA5-AS1 Gene

Publications for SMARCA5-AS1 Gene

No publications were found for SMARCA5-AS1 Gene.

Products for SMARCA5-AS1 Gene

Sources for SMARCA5-AS1 Gene

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