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Aliases for SMAD9-IT1 Gene

Subcategory (RNA class) for SMAD9-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SMAD9-IT1 Gene

  • SMAD9 Intronic Transcript 1 2 3 5
  • SMAD9 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMAD9 Antisense RNA 1 2
  • SMAD9-AS1 3

External Ids for SMAD9-IT1 Gene

Previous HGNC Symbols for SMAD9-IT1 Gene

  • SMAD9-AS1

Summaries for SMAD9-IT1 Gene

GeneCards Summary for SMAD9-IT1 Gene

SMAD9-IT1 (SMAD9 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMAD9-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMAD9-IT1 Gene

Genomics for SMAD9-IT1 Gene

Regulatory Elements for SMAD9-IT1 Gene

Enhancers for SMAD9-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H036858 0.6 ENCODE 0.4 -8.4 -8393 0.1 CTCF PKNOX1 ZNF654 REST RAD21 CEBPA ZNF143 SMC3 RXRB SMAD9-IT1 SMAD9
GH13H036887 0.4 ENCODE 0.3 -38.0 -37953 0.2 MLLT1 EGR2 SMAD9 SMAD9-IT1
GH13H036899 0.3 FANTOM5 0.2 -49.9 -49854 0.2 SMAD9 SERTM1 SMAD9-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMAD9-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMAD9-IT1 Gene

Genomic Locations for SMAD9-IT1 Gene
681 bases
Minus strand

Genomic View for SMAD9-IT1 Gene

Genes around SMAD9-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMAD9-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMAD9-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMAD9-IT1 Gene

Proteins for SMAD9-IT1 Gene

Post-translational modifications for SMAD9-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMAD9-IT1 Gene

Domains & Families for SMAD9-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMAD9-IT1 Gene

Function for SMAD9-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMAD9-IT1 Gene

Localization for SMAD9-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMAD9-IT1 Gene

Pathways & Interactions for SMAD9-IT1 Gene

SuperPathways for SMAD9-IT1 Gene

No Data Available

Interacting Proteins for SMAD9-IT1 Gene

Gene Ontology (GO) - Biological Process for SMAD9-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SMAD9-IT1 Gene

Drugs & Compounds for SMAD9-IT1 Gene

No Compound Related Data Available

Transcripts for SMAD9-IT1 Gene

mRNA/cDNA for SMAD9-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMAD9-IT1 Gene

No ASD Table

Relevant External Links for SMAD9-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SMAD9-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMAD9-IT1 Gene

genes like me logo Genes that share expression patterns with SMAD9-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMAD9-IT1 Gene

Orthologs for SMAD9-IT1 Gene

Evolution for SMAD9-IT1 Gene

Gene Tree for SMAD9-IT1 (if available)
Gene Tree for SMAD9-IT1 (if available)

No data available for Orthologs for SMAD9-IT1 Gene

Paralogs for SMAD9-IT1 Gene

No data available for Paralogs for SMAD9-IT1 Gene

Variants for SMAD9-IT1 Gene

Relevant External Links for SMAD9-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMAD9-IT1 Gene

Disorders for SMAD9-IT1 Gene

No disorders were found for SMAD9-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMAD9-IT1 Gene

Publications for SMAD9-IT1 Gene

No publications were found for SMAD9-IT1 Gene.

Products for SMAD9-IT1 Gene

Sources for SMAD9-IT1 Gene

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