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Aliases for SMAD5-AS1 Gene

Subcategory (RNA class) for SMAD5-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SMAD5-AS1 Gene

  • SMAD5 Antisense RNA 1 2 3 4
  • SMAD5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMAD Family Member 5 Opposite Strand 2 3
  • SMAD5OS 3 4
  • DAMS 3 4
  • 10.3 KDa Proline-Rich Protein DAMS 4
  • SMAD In The Antisense Orientation 3
  • SMAD Family Member 5, Antisense 3
  • SMAD5 Opposite Strand Protein 4
  • SMAD5AS 3

External Ids for SMAD5-AS1 Gene

Previous HGNC Symbols for SMAD5-AS1 Gene

  • SMAD5OS

Previous GeneCards Identifiers for SMAD5-AS1 Gene

  • GC05M135465

Summaries for SMAD5-AS1 Gene

GeneCards Summary for SMAD5-AS1 Gene

SMAD5-AS1 (SMAD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for SMAD5-AS1 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SMAD5-AS1 Gene

Genomics for SMAD5-AS1 Gene

Genomic Location for SMAD5-AS1 Gene

Start:
136,129,507 bp from pter
End:
136,134,890 bp from pter
Size:
5,384 bases
Orientation:
Minus strand

Genomic View for SMAD5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMAD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMAD5-AS1 Gene

No data available for Regulatory Elements for SMAD5-AS1 Gene

Proteins for SMAD5-AS1 Gene

  • Protein details for SMAD5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6J3-SMA5O_HUMAN
    Recommended name:
    SMAD5 antisense gene protein 1
    Protein Accession:
    Q9Y6J3
    Secondary Accessions:

    Protein attributes for SMAD5-AS1 Gene

    Size:
    95 amino acids
    Molecular mass:
    10312 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • This protein is coded from a SMAD5 gene antisense transcript

neXtProt entry for SMAD5-AS1 Gene

Proteomics data for SMAD5-AS1 Gene at MOPED

Post-translational modifications for SMAD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMAD5-AS1 Gene

Domains for SMAD5-AS1 Gene

Gene Families for SMAD5-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for SMAD5-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SMAD5-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMAD5-AS1: view

No data available for UniProtKB/Swiss-Prot for SMAD5-AS1 Gene

Function for SMAD5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMAD5-AS1 Gene

Localization for SMAD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMAD5-AS1 Gene

Pathways for SMAD5-AS1 Gene

SuperPathways for SMAD5-AS1 Gene

No Data Available

Interacting Proteins for SMAD5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMAD5-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction TAS 10049768
genes like me logo Genes that share ontologies with SMAD5-AS1: view

No data available for Pathways by source for SMAD5-AS1 Gene

Transcripts for SMAD5-AS1 Gene

mRNA/cDNA for SMAD5-AS1 Gene

(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMAD5-AS1 Gene

SMAD5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMAD5-AS1 Gene

No ASD Table

Relevant External Links for SMAD5-AS1 Gene

GeneLoc Exon Structure for
SMAD5-AS1
ECgene alternative splicing isoforms for
SMAD5-AS1

Expression for SMAD5-AS1 Gene

mRNA expression in normal human tissues for SMAD5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMAD5-AS1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (11.8) and Skin - Sun Exposed (Lower leg) (8.4).

SOURCE GeneReport for Unigene cluster for SMAD5-AS1 Gene Hs.59666

mRNA Expression by UniProt/SwissProt for SMAD5-AS1 Gene

Q9Y6J3-SMA5O_HUMAN
Tissue specificity: Expressed in fetal tissues
genes like me logo Genes that share expressions with SMAD5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Protein expression for SMAD5-AS1 Gene

Orthologs for SMAD5-AS1 Gene

Evolution for SMAD5-AS1 Gene

ENSEMBL:
Gene Tree for SMAD5-AS1 (if available)
TreeFam:
Gene Tree for SMAD5-AS1 (if available)

No data available for Orthologs for SMAD5-AS1 Gene

Paralogs for SMAD5-AS1 Gene

No data available for Paralogs for SMAD5-AS1 Gene

Variants for SMAD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMAD5-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs1558093 -- 136,129,033(-) GAATC(C/T)GTGAC downstream-variant-500B
rs61281413 -- 136,129,872(+) GAAAT(A/G)TTTCT intron-variant
rs74845983 -- 136,130,441(+) CTATT(C/T)TGATG intron-variant
rs79196131 -- 136,129,592(+) ATGTC(C/T)ATGTG nc-transcript-variant
rs115817132 -- 136,130,829(+) CTATG(A/G)GATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMAD5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1853e1 CNV Complex 17122850
nsv882932 CNV Loss 21882294

Relevant External Links for SMAD5-AS1 Gene

HapMap Linkage Disequilibrium report
SMAD5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SMAD5-AS1 Gene

Disorders for SMAD5-AS1 Gene

No disorders were found for SMAD5-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SMAD5-AS1 Gene

Publications for SMAD5-AS1 Gene

  1. An antisense transcript to SMAD5 expressed in fetal and tumor tissues. (PMID: 10049768) Zavadil J. … Nagarajan L. (Biochem. Biophys. Res. Commun. 1999) 2 3 4

Products for SMAD5-AS1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SMAD5-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SMAD5-AS1
    • Block miRNA regulation of SMAD5-AS1 using miScript Target Protectors

    Sources for SMAD5-AS1 Gene

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