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Aliases for SMAD5-AS1 Gene

Subcategory (RNA class) for SMAD5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SMAD5-AS1 Gene

  • SMAD5 Antisense RNA 1 2 3 4 5
  • SMAD5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SMAD Family Member 5 Opposite Strand 2 3
  • SMAD5OS 3 4
  • DAMS 3 4
  • 10.3 KDa Proline-Rich Protein DAMS 4
  • SMAD In The Antisense Orientation 3
  • SMAD Family Member 5, Antisense 3
  • SMAD5 Opposite Strand Protein 4
  • SMAD5AS 3

External Ids for SMAD5-AS1 Gene

Previous HGNC Symbols for SMAD5-AS1 Gene


Previous GeneCards Identifiers for SMAD5-AS1 Gene

  • GC05M135465

Summaries for SMAD5-AS1 Gene

GeneCards Summary for SMAD5-AS1 Gene

SMAD5-AS1 (SMAD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SMAD5-AS1 include Alternating Hemiplegia Of Childhood.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMAD5-AS1 Gene

Genomics for SMAD5-AS1 Gene

Regulatory Elements for SMAD5-AS1 Gene

Enhancers for SMAD5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G136013 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.6 +117.0 117033 9.2 PKNOX1 FOXA2 SIN3A FEZF1 FOS REST MAFF STAT3 NR2C1 HNF4A LECT2 SMAD5 SMAD5-AS1 LOC389332 LOC105379189 GC05P136010
GH05G135992 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +139.7 139735 5.0 FOXA2 ARNT MLX SIN3A NFXL1 RAD21 RARA FOS THAP11 SMARCA5 LECT2 SMAD5 ENSG00000254239 IL9 SMAD5-AS1 TGFBI SLC25A48 GC05P136002
GH05G136079 1.4 FANTOM5 ENCODE 10.3 +54.0 54033 1.7 PKNOX1 ATF1 CREB3L1 ARNT BRCA1 YY1 GTF3C2 GATA2 ZNF143 FOS SMAD5 LECT2 SMAD5-AS1 VTRNA2-1 ENSG00000278815 ENSG00000277859
GH05G136087 1.1 Ensembl ENCODE 10.5 +46.2 46218 3.1 HDAC1 PKNOX1 ZNF335 ZNF766 GATA2 EGR1 FOS KLF13 CREM EGR2 SMAD5 SMAD5-AS1 LECT2 ENSG00000254239 IL9 ENSG00000278815 VTRNA2-1 ENSG00000277859
GH05G136093 0.9 ENCODE 10.4 +40.2 40218 1.6 ATF1 ARID4B RAD21 THRB ZSCAN9 YY1 TCF12 RELB CREM MIXL1 SMAD5 SMAD5-AS1 ENSG00000254239 IL9 ENSG00000278815 VTRNA2-1 ENSG00000277859
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMAD5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SMAD5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SMAD5-AS1 Gene

136,129,507 bp from pter
136,134,890 bp from pter
5,384 bases
Minus strand

Genomic View for SMAD5-AS1 Gene

Genes around SMAD5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMAD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMAD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMAD5-AS1 Gene

Proteins for SMAD5-AS1 Gene

  • Protein details for SMAD5-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    SMAD5 antisense gene protein 1
    Protein Accession:

    Protein attributes for SMAD5-AS1 Gene

    95 amino acids
    Molecular mass:
    10312 Da
    Quaternary structure:
    No Data Available
    • This protein is coded from a SMAD5 gene antisense transcript.

neXtProt entry for SMAD5-AS1 Gene

Post-translational modifications for SMAD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMAD5-AS1 Gene

Domains & Families for SMAD5-AS1 Gene

Protein Domains for SMAD5-AS1 Gene


Suggested Antigen Peptide Sequences for SMAD5-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMAD5-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SMAD5-AS1 Gene

Function for SMAD5-AS1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMAD5-AS1 Gene

Localization for SMAD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMAD5-AS1 Gene

Pathways & Interactions for SMAD5-AS1 Gene

SuperPathways for SMAD5-AS1 Gene

No Data Available

Interacting Proteins for SMAD5-AS1 Gene

Gene Ontology (GO) - Biological Process for SMAD5-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction TAS 10049768
genes like me logo Genes that share ontologies with SMAD5-AS1: view

No data available for Pathways by source and SIGNOR curated interactions for SMAD5-AS1 Gene

Drugs & Compounds for SMAD5-AS1 Gene

No Compound Related Data Available

Transcripts for SMAD5-AS1 Gene

mRNA/cDNA for SMAD5-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMAD5-AS1 Gene

SMAD5 antisense RNA 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMAD5-AS1 Gene

No ASD Table

Relevant External Links for SMAD5-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SMAD5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMAD5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SMAD5-AS1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x11.8) and Skin - Sun Exposed (Lower leg) (x8.4).

SOURCE GeneReport for Unigene cluster for SMAD5-AS1 Gene:


mRNA Expression by UniProt/SwissProt for SMAD5-AS1 Gene:

Tissue specificity: Expressed in fetal tissues.
genes like me logo Genes that share expression patterns with SMAD5-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMAD5-AS1 Gene

Orthologs for SMAD5-AS1 Gene

Evolution for SMAD5-AS1 Gene

Gene Tree for SMAD5-AS1 (if available)
Gene Tree for SMAD5-AS1 (if available)

No data available for Orthologs for SMAD5-AS1 Gene

Paralogs for SMAD5-AS1 Gene

No data available for Paralogs for SMAD5-AS1 Gene

Variants for SMAD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMAD5-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000205842 -- 136,131,772(+) GGCCA(G/T)GGAGG intron-variant, upstream-variant-2KB
rs1000314427 -- 136,129,057(+) CCTGA(A/G)GCTTC downstream-variant-500B
rs1000454838 -- 136,136,445(+) GAATA(A/G)TAGTC intron-variant, upstream-variant-2KB
rs1000570528 -- 136,135,175(+) GCAGA(A/G)TGTTG intron-variant, upstream-variant-2KB
rs1000810994 -- 136,130,092(+) AACTA(C/T)TTGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMAD5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759380 CNV loss 17122850

Relevant External Links for SMAD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMAD5-AS1 Gene

Disorders for SMAD5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SMAD5-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
alternating hemiplegia of childhood
  • ahc
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SMAD5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SMAD5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SMAD5-AS1 Gene

Publications for SMAD5-AS1 Gene

  1. An antisense transcript to SMAD5 expressed in fetal and tumor tissues. (PMID: 10049768) Zavadil J. … Nagarajan L. (Biochem. Biophys. Res. Commun. 1999) 2 3 4 64

Products for SMAD5-AS1 Gene

Sources for SMAD5-AS1 Gene

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