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Aliases for SMAD1-AS1 Gene

Subcategory (RNA class) for SMAD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMAD1-AS1 Gene

  • SMAD1 Antisense RNA 1 2 3 5

External Ids for SMAD1-AS1 Gene

Previous GeneCards Identifiers for SMAD1-AS1 Gene

  • GC00U934748

Summaries for SMAD1-AS1 Gene

GeneCards Summary for SMAD1-AS1 Gene

SMAD1-AS1 (SMAD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMAD1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMAD1-AS1 Gene

Genomics for SMAD1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SMAD1-AS1 Gene

Promoters and enhancers for SMAD1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I145538 Enhancer 0.9 Ensembl ENCODE dbSUPER 13.1 -23.5 -23504 4.1 PRDM6 SCRT2 ATF7 ZNF600 ATF2 SMAD1-AS1 SMAD1-AS2 SMAD1 LOC285422
GH04I145506 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +9.6 9578 2.3 ELF3 GATAD2A SRF JUN ZFP37 MAFG MAFF PRDM6 ZNF316 HNF4A SMAD1-AS2 SMAD1-AS1 SMAD1
GH04I145530 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -15.3 -15276 3.5 ZNF121 POLR2A MAFK CHD2 SMAD1-AS2 SMAD1 OTUD4 MMAA SMAD1-AS1 LOC285422
GH04I145544 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -28.6 -28607 3.4 JUN CEBPB EP300 SP1 ZFHX2 PRDM6 JUND POLR2A FOS FOSL2 MMAA SMAD1-AS1 LOC285422 SMAD1
GH04I145523 Enhancer 0.6 ENCODE dbSUPER 0.4 -8.3 -8268 3.1 ZNF316 ZNF449 ZBTB8A SMAD1 SMAD1-AS1 LOC285422
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SMAD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMAD1-AS1 Gene

Genomic Locations for SMAD1-AS1 Gene
chr4:145,514,578-145,517,194
(GRCh38/hg38)
Size:
2,617 bases
Orientation:
Minus strand

Genomic View for SMAD1-AS1 Gene

Genes around SMAD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMAD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMAD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMAD1-AS1 Gene

Proteins for SMAD1-AS1 Gene

Post-translational modifications for SMAD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMAD1-AS1 Gene

Domains & Families for SMAD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMAD1-AS1 Gene

Function for SMAD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMAD1-AS1 Gene

Localization for SMAD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMAD1-AS1 Gene

Pathways & Interactions for SMAD1-AS1 Gene

SuperPathways for SMAD1-AS1 Gene

No Data Available

Interacting Proteins for SMAD1-AS1 Gene

Gene Ontology (GO) - Biological Process for SMAD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMAD1-AS1 Gene

Drugs & Compounds for SMAD1-AS1 Gene

No Compound Related Data Available

Transcripts for SMAD1-AS1 Gene

mRNA/cDNA for SMAD1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMAD1-AS1 Gene

No ASD Table

Relevant External Links for SMAD1-AS1 Gene

GeneLoc Exon Structure for
SMAD1-AS1
ECgene alternative splicing isoforms for
SMAD1-AS1

Expression for SMAD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMAD1-AS1 Gene

genes like me logo Genes that share expression patterns with SMAD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMAD1-AS1 Gene

Orthologs for SMAD1-AS1 Gene

Evolution for SMAD1-AS1 Gene

ENSEMBL:
Gene Tree for SMAD1-AS1 (if available)
TreeFam:
Gene Tree for SMAD1-AS1 (if available)

No data available for Orthologs for SMAD1-AS1 Gene

Paralogs for SMAD1-AS1 Gene

No data available for Paralogs for SMAD1-AS1 Gene

Variants for SMAD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMAD1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs587777018 uncertain-significance, Variant of unknown significance, Primary pulmonary hypertension 145,514,621(-) T/C non_coding_transcript_variant
rs1001339256 -- 145,518,944(-) C/G upstream_transcript_variant
rs1001785463 -- 145,518,565(-) A/G upstream_transcript_variant
rs1002956724 -- 145,517,243(-) A/T upstream_transcript_variant
rs1002997662 -- 145,516,057(-) A/G intron_variant

Additional Variant Information for SMAD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMAD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMAD1-AS1 Gene

Disorders for SMAD1-AS1 Gene

Additional Disease Information for SMAD1-AS1

No disorders were found for SMAD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMAD1-AS1 Gene

Publications for SMAD1-AS1 Gene

  1. Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect. (PMID: 24147006) Song G … Qian L (PloS one 2013) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SMAD1-AS1 Gene

Sources for SMAD1-AS1 Gene

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