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Aliases for SMAD1-AS1 Gene

Subcategory (RNA class) for SMAD1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMAD1-AS1 Gene

  • SMAD1 Antisense RNA 1 2 3 5
  • ENST00000513542 3

External Ids for SMAD1-AS1 Gene

Previous GeneCards Identifiers for SMAD1-AS1 Gene

  • GC00U934748

Summaries for SMAD1-AS1 Gene

GeneCards Summary for SMAD1-AS1 Gene

SMAD1-AS1 (SMAD1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMAD1-AS1 Gene

Genomics for SMAD1-AS1 Gene

Regulatory Elements for SMAD1-AS1 Gene

Enhancers for SMAD1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F145538 0.8 Ensembl ENCODE 13.1 -23.5 -23505 4.1 JUND SCRT2 ZNF600 ATF2 SMAD1-AS1 SMAD1-AS2 SMAD1 LOC285422
GH04F145506 0.9 Ensembl ENCODE 0.4 +9.6 9579 2.3 GATAD2A ELF3 JUN MAFG ZFP37 ZNF664 MAFF ZNF316 NFE2 MAFK SMAD1-AS2 SMAD1-AS1
GH04F145523 1.1 Ensembl ENCODE 0.4 -8.2 -8220 3.2 ZNF316 ATF3 ZBTB8A ZBTB33 SMAD1 SMAD1-AS1 LOC285422
GH04F145503 0.2 Ensembl 0.4 +13.4 13394 0.4 SMAD1-AS2 SMAD1-AS1
GH04F145530 0.8 Ensembl ENCODE 0.3 -15.3 -15276 3.5 PKNOX1 CEBPB ATF2 ZNF121 POLR2A SMARCA4 PBX2 MAFK SMAD1-AS2 SMAD1 OTUD4 MMAA SMAD1-AS1 LOC285422
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SMAD1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMAD1-AS1 Gene

Chromosome:
4
Start:
145,514,578 bp from pter
End:
145,517,194 bp from pter
Size:
2,617 bases
Orientation:
Minus strand

Genomic View for SMAD1-AS1 Gene

Genes around SMAD1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMAD1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMAD1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMAD1-AS1 Gene

Proteins for SMAD1-AS1 Gene

Post-translational modifications for SMAD1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMAD1-AS1 Gene

Domains & Families for SMAD1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMAD1-AS1 Gene

Function for SMAD1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMAD1-AS1 Gene

Localization for SMAD1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMAD1-AS1 Gene

Pathways & Interactions for SMAD1-AS1 Gene

SuperPathways for SMAD1-AS1 Gene

No Data Available

Interacting Proteins for SMAD1-AS1 Gene

Gene Ontology (GO) - Biological Process for SMAD1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMAD1-AS1 Gene

Transcripts for SMAD1-AS1 Gene

mRNA/cDNA for SMAD1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMAD1-AS1 Gene

No ASD Table

Relevant External Links for SMAD1-AS1 Gene

GeneLoc Exon Structure for
SMAD1-AS1
ECgene alternative splicing isoforms for
SMAD1-AS1

Expression for SMAD1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMAD1-AS1 Gene

genes like me logo Genes that share expression patterns with SMAD1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMAD1-AS1 Gene

Orthologs for SMAD1-AS1 Gene

Evolution for SMAD1-AS1 Gene

ENSEMBL:
Gene Tree for SMAD1-AS1 (if available)
TreeFam:
Gene Tree for SMAD1-AS1 (if available)

No data available for Orthologs for SMAD1-AS1 Gene

Paralogs for SMAD1-AS1 Gene

No data available for Paralogs for SMAD1-AS1 Gene

Variants for SMAD1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SMAD1-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs587777018 Uncertain significance 145,514,621(+) GAATG(C/T)GACAA nc-transcript-variant, reference, missense
rs111666168 -- 145,514,452(+) GGGTT(A/G)CTTTT downstream-variant-500B, utr-variant-5-prime
rs111844630 -- 145,514,223(+) ACCTT(-/ACTTA)ACTTT intron-variant, downstream-variant-500B
rs111946727 -- 145,515,174(+) TGTGT(C/G)TGTCT intron-variant
rs112476958 -- 145,514,514(+) TTAAA(A/G)AGACT downstream-variant-500B, utr-variant-5-prime

Relevant External Links for SMAD1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMAD1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMAD1-AS1 Gene

Disorders for SMAD1-AS1 Gene

Relevant External Links for SMAD1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMAD1-AS1

No disorders were found for SMAD1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMAD1-AS1 Gene

Publications for SMAD1-AS1 Gene

  1. Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect. (PMID: 24147006) Song G. … Qian L. (PLoS ONE 2013) 2 3 64

Products for SMAD1-AS1 Gene

Sources for SMAD1-AS1 Gene

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