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Aliases for SLX1A-SULT1A3 Gene

Subcategory (RNA class) for SLX1A-SULT1A3 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SLX1A-SULT1A3 Gene

  • SLX1A-SULT1A3 Readthrough (NMD Candidate) 2 3
  • SLX1A-SULT1A3 Readthrough (Non-Protein Coding) 2

External Ids for SLX1A-SULT1A3 Gene

Previous GeneCards Identifiers for SLX1A-SULT1A3 Gene

  • GC16U901280
  • GC16P030212
  • GC16P030216
  • GC16P030219

Summaries for SLX1A-SULT1A3 Gene

Entrez Gene Summary for SLX1A-SULT1A3 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SLX1A (SLX1 structure-specific endonuclease subunit homolog A) and SULT1A3 (sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3) genes on the short arm of chromosome 16. A duplicate read-through locus also exists between the SLX1B and SULT1A4 genes located ~730 kb upstream on the same chromosome. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is thus unlikely to produce a protein product. [provided by RefSeq, Nov 2010]

GeneCards Summary for SLX1A-SULT1A3 Gene

SLX1A-SULT1A3 (SLX1A-SULT1A3 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Metabolism and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein.

fRNAdb sequence ontologies for SLX1A-SULT1A3 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SLX1A-SULT1A3 Gene

Genomics for SLX1A-SULT1A3 Gene

Genomic Location for SLX1A-SULT1A3 Gene

Start:
30,193,892 bp from pter
End:
30,204,329 bp from pter
Size:
10,438 bases
Orientation:
Plus strand

Genomic View for SLX1A-SULT1A3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLX1A-SULT1A3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLX1A-SULT1A3 Gene

No data available for Regulatory Elements for SLX1A-SULT1A3 Gene

Proteins for SLX1A-SULT1A3 Gene

  • Protein details for SLX1A-SULT1A3 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q1ET61
    Recommended name:
    Sulfotransferase
    Protein Accession:
    Q1ET61
    Secondary Accessions:

    Protein attributes for SLX1A-SULT1A3 Gene

    Size:
    295 amino acids
    Molecular mass:
    34196 Da
    Quaternary structure:
    No Data Available
  • Protein details for SLX1A-SULT1A3 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9UMT9
    Recommended name:
    Sulfotransferase
    Protein Accession:
    Q9UMT9
    Secondary Accessions:

    Protein attributes for SLX1A-SULT1A3 Gene

    Size:
    42 amino acids
    Molecular mass:
    4794 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLX1A-SULT1A3 Gene

Proteomics data for SLX1A-SULT1A3 Gene at MOPED

Post-translational modifications for SLX1A-SULT1A3 Gene

No Post-translational modifications

Other Protein References for SLX1A-SULT1A3 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for SLX1A-SULT1A3 Gene

Domains for SLX1A-SULT1A3 Gene

Protein Domains for SLX1A-SULT1A3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SLX1A-SULT1A3: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLX1A-SULT1A3 Gene

Function for SLX1A-SULT1A3 Gene

Gene Ontology (GO) - Molecular Function for SLX1A-SULT1A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004062 aryl sulfotransferase activity --
GO:0008146 sulfotransferase activity --
genes like me logo Genes that share ontologies with SLX1A-SULT1A3: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SLX1A-SULT1A3 Gene

Localization for SLX1A-SULT1A3 Gene

Gene Ontology (GO) - Cellular Components for SLX1A-SULT1A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm --
genes like me logo Genes that share ontologies with SLX1A-SULT1A3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SLX1A-SULT1A3 Gene

Pathways for SLX1A-SULT1A3 Gene

genes like me logo Genes that share pathways with SLX1A-SULT1A3: view

Pathways by source for SLX1A-SULT1A3 Gene

Interacting Proteins for SLX1A-SULT1A3 Gene

Gene Ontology (GO) - Biological Process for SLX1A-SULT1A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006584 catecholamine metabolic process --
GO:0008202 steroid metabolic process --
genes like me logo Genes that share ontologies with SLX1A-SULT1A3: view

Transcripts for SLX1A-SULT1A3 Gene

mRNA/cDNA for SLX1A-SULT1A3 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLX1A-SULT1A3 Gene

No ASD Table

Relevant External Links for SLX1A-SULT1A3 Gene

GeneLoc Exon Structure for
SLX1A-SULT1A3
ECgene alternative splicing isoforms for
SLX1A-SULT1A3

Expression for SLX1A-SULT1A3 Gene

mRNA expression in normal human tissues for SLX1A-SULT1A3 Gene

genes like me logo Genes that share expressions with SLX1A-SULT1A3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SLX1A-SULT1A3 Gene

Orthologs for SLX1A-SULT1A3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLX1A-SULT1A3 Gene

Organism Taxonomy Gene Similarity Type Details
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SLX1 38
Species with no ortholog for SLX1A-SULT1A3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SLX1A-SULT1A3 Gene

ENSEMBL:
Gene Tree for SLX1A-SULT1A3 (if available)
TreeFam:
Gene Tree for SLX1A-SULT1A3 (if available)

Paralogs for SLX1A-SULT1A3 Gene

No data available for Paralogs for SLX1A-SULT1A3 Gene

Variants for SLX1A-SULT1A3 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLX1A-SULT1A3 Gene

Variant ID Type Subtype PubMed ID
dgv845e1 CNV Complex 17122850
nsv905711 CNV Gain 21882294
esv29892 CNV Gain 19812545
esv2714183 CNV Deletion 23290073
nsv498862 CNV Loss 21111241
nsv820959 CNV Duplication 20802225
nsv9426 CNV Gain 18304495
nsv905720 CNV Loss 21882294
dgv846e1 CNV Complex 17122850
dgv847e1 CNV Complex 17122850
nsv9431 CNV Gain+Loss 18304495
esv22245 CNV Gain 19812545
nsv821543 CNV Duplication 20802225
nsv471388 CNV Duplication 19718026
nsv471389 CNV Duplication 19718026

Relevant External Links for SLX1A-SULT1A3 Gene

HapMap Linkage Disequilibrium report
SLX1A-SULT1A3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SLX1A-SULT1A3 Gene

Disorders for SLX1A-SULT1A3 Gene

No disorders were found for SLX1A-SULT1A3 Gene.

No data available for UniProtKB/Swiss-Prot for SLX1A-SULT1A3 Gene

Publications for SLX1A-SULT1A3 Gene

  1. Human platelet phenolsulfotransferases: cDNA cloning, stable expression in V79 cells and identification of a novel allelic variant of the phenol-sulfating form. (PMID: 7695643) Jones A.L. … Glatt H. (Biochem. Biophys. Res. Commun. 1995) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Human SULT1A3 pharmacogenetics: gene duplication and functional genomic studies. (PMID: 15358107) Hildebrandt M.A.T. … Weinshilboum R.M. (Biochem. Biophys. Res. Commun. 2004) 3
  5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for SLX1A-SULT1A3 Gene

Sources for SLX1A-SULT1A3 Gene

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