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Aliases for SLTM Gene

Aliases for SLTM Gene

  • SAFB Like Transcription Modulator 2 3
  • Modulator Of Estrogen-Induced Transcription 3 4
  • SAFB-Like, Transcription Modulator 3 5
  • MET 3 4

External Ids for SLTM Gene

Previous GeneCards Identifiers for SLTM Gene

  • GC15M056959
  • GC15M059171
  • GC15M035994

Summaries for SLTM Gene

GeneCards Summary for SLTM Gene

SLTM (SAFB Like Transcription Modulator) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is SAFB.

UniProtKB/Swiss-Prot for SLTM Gene

  • When overexpressed, acts as a general inhibitor of transcription that eventually leads to apoptosis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLTM Gene

Genomics for SLTM Gene

Regulatory Elements for SLTM Gene

Enhancers for SLTM Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SLTM on UCSC Golden Path with GeneCards custom track

Promoters for SLTM Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLTM on UCSC Golden Path with GeneCards custom track

Genomic Location for SLTM Gene

Chromosome:
15
Start:
58,879,045 bp from pter
End:
58,934,313 bp from pter
Size:
55,269 bases
Orientation:
Minus strand

Genomic View for SLTM Gene

Genes around SLTM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLTM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLTM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLTM Gene

Proteins for SLTM Gene

  • Protein details for SLTM Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NWH9-SLTM_HUMAN
    Recommended name:
    SAFB-like transcription modulator
    Protein Accession:
    Q9NWH9
    Secondary Accessions:
    • A8K5V8
    • B2RTX3
    • Q2VPK7
    • Q52MB3
    • Q658J7
    • Q6ZNF2
    • Q86TK6
    • Q9H7C3
    • Q9H8U9

    Protein attributes for SLTM Gene

    Size:
    1034 amino acids
    Molecular mass:
    117148 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI08657.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=BAB14502.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB14971.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14971.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for SLTM Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLTM Gene

Proteomics data for SLTM Gene at MOPED

Post-translational modifications for SLTM Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SLTM Gene

Domains & Families for SLTM Gene

Gene Families for SLTM Gene

Suggested Antigen Peptide Sequences for SLTM Gene

Graphical View of Domain Structure for InterPro Entry

Q9NWH9

UniProtKB/Swiss-Prot:

SLTM_HUMAN :
  • Contains 1 RRM (RNA recognition motif) domain.
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.
  • Contains 1 SAP domain.
genes like me logo Genes that share domains with SLTM: view

Function for SLTM Gene

Molecular function for SLTM Gene

UniProtKB/Swiss-Prot Function:
When overexpressed, acts as a general inhibitor of transcription that eventually leads to apoptosis.
genes like me logo Genes that share phenotypes with SLTM: view

Animal Model Products

miRNA for SLTM Gene

miRTarBase miRNAs that target SLTM

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLTM Gene

Localization for SLTM Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLTM Gene

Nucleus. Note=Detected in punctate structures. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLTM Gene COMPARTMENTS Subcellular localization image for SLTM gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for SLTM Gene

Pathways & Interactions for SLTM Gene

SuperPathways for SLTM Gene

No Data Available

Interacting Proteins for SLTM Gene

Gene Ontology (GO) - Biological Process for SLTM Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLTM Gene

Drugs & Compounds for SLTM Gene

No Compound Related Data Available

Transcripts for SLTM Gene

Unigene Clusters for SLTM Gene

SAFB-like, transcription modulator:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLTM Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c · 4d ^ 5a · 5b · 5c · 5d ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b ^ 12 ^
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - -
SP4: - -
SP5: - - - - - - - - - -
SP6:
SP7: - - - - - - - - - - - -
SP8: -
SP9: - - - - - - - - -
SP10: - - - -
SP11: - - - - -
SP12:
SP13: - - -
SP14:
SP15:
SP16:
SP17:
SP18:

ExUns: 13 ^ 14 ^ 15a · 15b · 15c ^ 16a · 16b · 16c ^ 17a · 17b · 17c · 17d · 17e ^ 18 ^ 19 ^ 20
SP1:
SP2:
SP3:
SP4:
SP5:
SP6: - - -
SP7:
SP8:
SP9:
SP10:
SP11:
SP12: - - - -
SP13:
SP14: - -
SP15: -
SP16:
SP17:
SP18:

Relevant External Links for SLTM Gene

GeneLoc Exon Structure for
SLTM
ECgene alternative splicing isoforms for
SLTM

Expression for SLTM Gene

mRNA expression in normal human tissues for SLTM Gene

Protein differential expression in normal tissues from HIPED for SLTM Gene

This gene is overexpressed in Peripheral blood mononuclear cells (10.6) and CD8 Tcells (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for SLTM Gene



SOURCE GeneReport for Unigene cluster for SLTM Gene Hs.512932

genes like me logo Genes that share expression patterns with SLTM: view

Protein tissue co-expression partners for SLTM Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SLTM Gene

Orthologs for SLTM Gene

This gene was present in the common ancestor of animals.

Orthologs for SLTM Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLTM 35
  • 94.46 (n)
  • 95.21 (a)
SLTM 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLTM 35
  • 94.45 (n)
  • 95.61 (a)
SLTM 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sltm 35
  • 89.46 (n)
  • 91.37 (a)
Sltm 16
Sltm 36
  • 90 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLTM 35
  • 99.77 (n)
  • 100 (a)
SLTM 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 84 (a)
OneToMany
-- 36
  • 50 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SLTM 36
  • 76 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLTM 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLTM 36
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.6513 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.22945 35
zebrafish
(Danio rerio)
Actinopterygii Dr.15690 35
sltm 35
  • 60.46 (n)
  • 59.89 (a)
sltm 36
  • 48 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10016 35
fruit fly
(Drosophila melanogaster)
Insecta Saf-B 36
  • 21 (a)
OneToMany
Species with no ortholog for SLTM:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLTM Gene

ENSEMBL:
Gene Tree for SLTM (if available)
TreeFam:
Gene Tree for SLTM (if available)

Paralogs for SLTM Gene

Paralogs for SLTM Gene

genes like me logo Genes that share paralogs with SLTM: view

Variants for SLTM Gene

Sequence variations from dbSNP and Humsavar for SLTM Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs7175939 - 58,899,824(+) TTTCA(C/G)AGTCG intron-variant, nc-transcript-variant, reference, missense
rs5812954 -- 58,894,705(+) TTTTT(-/T/TT)GAGAT intron-variant
rs5812955 -- 58,898,612(+) AGTAA(-/ATAA/GTAA)ACAGT intron-variant
rs6494043 -- 58,904,498(+) TAACA(A/G)TGTAA intron-variant
rs6494044 -- 58,927,857(+) AATTA(A/C)AGTAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLTM Gene

Variant ID Type Subtype PubMed ID
nsv7266 OTHER Inversion 18451855
nsv904254 CNV Gain 21882294
esv34110 CNV Loss 18971310
nsv527307 CNV Gain 19592680
nsv904270 CNV Loss 21882294
nsv94675 CNV Loss 16902084

Variation tolerance for SLTM Gene

Residual Variation Intolerance Score: 3.51% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.07; 21.92% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SLTM Gene

Disorders for SLTM Gene

Relevant External Links for SLTM

Genetic Association Database (GAD)
SLTM
Human Genome Epidemiology (HuGE) Navigator
SLTM
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLTM

No disorders were found for SLTM Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLTM Gene

Publications for SLTM Gene

  1. Variants in several genomic regions associated with asperger disorder. (PMID: 21182207) Salyakina D. … Pericak-Vance M.A. (Autism Res 2010) 3 48 67
  2. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3
  3. SR protein kinases promote splicing of nonconsensus introns. (PMID: 26167880) Lipp J.J. … Guthrie C. (Nat. Struct. Mol. Biol. 2015) 3
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3

Products for SLTM Gene

Sources for SLTM Gene

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