SLN Gene
protein-coding GIFtS : 50
GCID: GC11 M107612
sarcolipin
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Aliasesfor SLN gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Sarcolipin 1 MGC123011 MGC1258541 MGC1258551
Export aliases for SLN gene to outside databases Previous GC identifers: GC11M109772 GC11M108934 GC11M107115 GC11M107083 GC11M103503
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Summariesfor SLN gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for SLN : Sarcoplasmic reticulum Ca(2+)-ATPases are transmembrane proteins that catalyze the ATP-dependent transport of Ca(2+) from the cytosol into the lumen of the sarcoplasmic reticulum in muscle cells. This gene encodes a small proteolipid that regulates several sarcoplasmic reticulum Ca(2+)-ATPases. The transmembrane protein interacts with Ca(2+)-ATPases and reduces the accumulation of Ca(2+) in the sarcoplasmic reticulum without affecting the rate of ATP hydrolysis. (provided by RefSeq, Jul 2008) Gene Wiki entry for SLN (Sarcolipin)
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Genomic Viewsfor SLN gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000011.9 NC_018922.1 NT_033899.8 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SLN gene promoter: Nkx3-1 Nkx3-1 v4 MEF-2 Nkx3-1 v1 C/EBPalpha MEF-2A Nkx3-1 v2 Nkx3-1 v3 c-Myb aMEF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for SLN Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLN
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q22-q23 Ensembl cytogenetic band: 11q22.3 HGNC cytogenetic band: 11q22-q23 SLN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M107612: view genomic region
(about GC identifiers )
Start:
107,578,101 bp from pter
End:
107,590,419 bp from pter
Size:
12,319 bases
Orientation:
minus strand
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Proteinsfor SLN gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SARCO_HUMAN, O00631 (See
protein sequence )Recommended Name: Sarcolipin Size : 31 amino acids; 3762 Da
Subunit : Associated with calcium ATPase SERCA1
Subcellular location : Sarcoplasmic reticulum membrane; Single-pass membrane protein
1 PDB 3D structure from and Proteopedia for SLN :1JDM (3D)
 
Secondary accessions : Q6ICV3Explore the universe of human proteins at neXtProt for SLN: NX_O00631 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O00631 SLN Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_003054.1 ENSEMBL proteins: ENSP00000435380 ENSP00000434189 ENSP00000304707 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
SLN for ontologies About GeneDecksing SLN Antibody Products: Assay Products for SLN:
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Protein
Domains / Familiesfor SLN gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SLN for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry O00631 ProtoNet protein and cluster: O00631
1 Blocks protein family : IPB008028 Sarcolipin UniProtKB/Swiss-Prot: SARCO_HUMAN, O00631 Similarity : Belongs to the sarcolipin family
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Functionfor SLN gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for SLN : sarcolipin,low molecular weight proteolipid associated with the fast-twitch skeletal muscle sarcoplasmic reticulum Ca++ ATPase (ATP2A1),phospholamban homolog Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SLN (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SLNOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SLN (NM_003063 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SLN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SLN
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLN
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
SLN for ontologies About GeneDecksing Animal Models: Mouse knock-out Sln tm1Peri for SLN 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Sln) :
SLN for phenotypes About GeneDecksing
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Pathways & Interactionsfor SLN gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for SLN STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)4 Interacting proteins for SLN (O00631 3 ENSP00000304707 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8 ): About this table
SLN for ontologies About GeneDecksing
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Drugs & Compoundsfor SLN gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
SLN for compounds About GeneDecksing Browse Tocris compounds for SLN 1 HMDB Compound for SLN About this table 2 Novoseek chemical compound relationships for SLN gene About this table
Search CenterWatch for drugs/clinical trials and news about SLN / SARCO
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Transcriptsfor SLN gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SLN gene: NM_003063.2 Unigene Cluster for SLN:
Sarcolipin Hs.334629 [show with all ESTs ] Unigene Representative Sequence: BF694738 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000531293 (uc001pjp.3 ) ENST00000525934 ENST00000305991 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SLN (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SLNOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: SLN (NM_003063 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SLN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SLN
Additional cDNA sequence: AK312097.1 BC005261.1 BC094685.1 BC104150.2 BC104185.2 BC113930.1 BC113987.1 U96094.1
3 DOTS entries : DT.215889 DT.92432410
DT.92432404 24/153 AceView cDNA sequences (see all 153 ):
BM090813 F18591 F18810 AA112042 AW450261 BU737006 F31795 AW051121 BF222001 F32532 F32610 AA196050 CR450290 BG204330 BG207478 W67459 AJ572341 F34683 F32064 AJ346720 BM668976 BE645530 F29875 F22314 GeneLoc Exon Structure
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Expression for SLN gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SLN expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGAATAAAGT
About this image SLN expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See SLN Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SLN SOURCE GeneReport for Unigene cluster: Hs.334629 SABiosciences Custom PCR Arrays for SLN Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat SLN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SLN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SLN In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLN
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Orthologsfor SLN gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of human and mouse.
Orthologs for SLN gene from 1 species (see representative species ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Sln5
sarcolipin
--
 
9 (29.24 cM) 53850251
ENSEMBL Gene Tree for SLN (if available)TreeFam Gene Tree for SLN (if available)
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Paralogsfor SLN gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor SLN gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 11 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SLN (107578101 - 107590419 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for SLN 1 CNV : 8696
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SLN
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Disorders
/ Diseasesfor SLN gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SLN for disorders About GeneDecksing
OMIM gene information: 602203
OMIM disorders : --9 diseases for SLN : About MalaCards long qt syndrome atrial fibrillation hypertrophic cardiomyopathy familial hypertrophic cardiomyopathy congenital heart defect tetralogy of fallot endometriosis of uterus dysferlinopathy cardiomyopathy 1 Novoseek disease relationship for SLN gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
atrial fibrillation
10.9
4
17010328 (3), 15530144 (1)
Human Genome Epidemiology (HuGE) Navigator: SLN (5 documents) Export disorders for SLN gene to outside databases
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Publicationsfor SLN gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SLN gene, integrated from 9 sources (see all 44 ): (articles sorted by number of sources associating them with SLN) Utopia : connect your pdf to the dynamic world of online information
Characterization of the gene encoding human sarcolipin (SLN), a proteolipid associated with SERCA1: absence of structural mutations in five patients with Brody disease. (PubMed id 9367679) 1 , 2 , 3, 9 Odermatt A.... Maclennan D.H. (1997) Structure and orientation of sarcolipin in lipid environments. (PubMed id 11781085) 1 , 2 , 9 Mascioni A.... Veglia G. (2002) Sarcolipin regulates the activity of SERCA1, the fast-twitch skeletal muscle sarcoplasmic reticulum Ca2+-ATPase. (PubMed id 9575189) 1 , 9 Odermatt A....MacLennan D.H. (1998) Sarcolipin uncouples hydrolysis of ATP from accumulation of Ca2+ by the Ca2+-ATPase of skeletal-muscle sarcoplasmic reticulum. (PubMed id 11772399) 1 , 9 Smith W.S....Lee A.G. (2002) Sarcolipin regulates sarco(endo)plasmic reticulum Ca2+-ATPase (SERCA) by binding to transmembrane helices alone or in association with phospholamban. (PubMed id 12692302) 1 , 9 Asahi M....MacLennan D.H. (2003) The variation of the sarcolipin gene (SLN) in atrial fibrillation, long QT syndrome and sudden arrhythmic death syndrome. (PubMed id 17010328) 1 , 9 Nyberg M.T....Christiansen M. (2007) SERCA2a, phospholamban, sarcolipin, and ryanodine receptors gene expression in children with congenital heart defects. (PubMed id 17515962) 1 , 9 Vittorini S....Clerico A. (2007) Decreased sarcolipin protein expression and enhanced sarco(endo)plasmic reticulum Ca2+ uptake in human atrial fibrillation. (PubMed id 21640081) 1 Shanmugam M....Babu G.J. (2011) Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086) 1 Bailey S.D....Anand S. (2010) Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121) 1 Talmud P.J.... . (2009)
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External Searches for SLN gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SLN gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SLN gene
(According to HUGE )
About This Section --
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Specialized Databases showing SLN gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SLN Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SLN gene: Search GeneIP for patents involving SLN GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SLN gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SLN OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SLN Browse OriGene genome-wide validated SYBR primer pairs OriGene Protein Over-expression Lysate for SLN Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SLN OriGene 3'-UTR Clone for SLN OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SLN OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SLN Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SLN OriGene Custom Protein Services for SLN OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SLN QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SLN QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLN QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SLN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SLN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SLN
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SLN Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLN
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SLN
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