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Aliases for SLMO2-ATP5E Gene

Subcategory (RNA class) for SLMO2-ATP5E Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for SLMO2-ATP5E Gene

  • SLMO2-ATP5E Readthrough 3

External Ids for SLMO2-ATP5E Gene

Previous GeneCards Identifiers for SLMO2-ATP5E Gene

  • GC20U900670
  • GC07P126936
  • GC20M057605

Summaries for SLMO2-ATP5E Gene

Entrez Gene Summary for SLMO2-ATP5E Gene

  • This locus represents naturally occurring read-through transcription between the neighboring SLMO2 (slowmo homolog 2 (Drosophila)) and ATP5E (ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit) genes on chromosome 20. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for SLMO2-ATP5E Gene

SLMO2-ATP5E (SLMO2-ATP5E Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLMO2-ATP5E Gene

Genomics for SLMO2-ATP5E Gene

Regulatory Elements for SLMO2-ATP5E Gene

Enhancers for SLMO2-ATP5E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G059039 1.4 ENCODE dbSUPER 0.7 +0.7 661 4.8 HDGF PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 NELFCD ZNF831 LOC101927932 GNAS PRELID3B SLMO2-ATP5E ATP5E
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLMO2-ATP5E on UCSC Golden Path with GeneCards custom track

Promoters for SLMO2-ATP5E Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000139465 346 1401 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 ZNF207

Genomic Location for SLMO2-ATP5E Gene

Chromosome:
20
Start:
59,028,678 bp from pter
End:
59,042,846 bp from pter
Size:
14,169 bases
Orientation:
Minus strand

Genomic View for SLMO2-ATP5E Gene

Genes around SLMO2-ATP5E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLMO2-ATP5E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLMO2-ATP5E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLMO2-ATP5E Gene

Proteins for SLMO2-ATP5E Gene

Post-translational modifications for SLMO2-ATP5E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLMO2-ATP5E Gene

Domains & Families for SLMO2-ATP5E Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLMO2-ATP5E Gene

Function for SLMO2-ATP5E Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLMO2-ATP5E Gene

Localization for SLMO2-ATP5E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLMO2-ATP5E Gene

Pathways & Interactions for SLMO2-ATP5E Gene

SuperPathways for SLMO2-ATP5E Gene

No Data Available

Interacting Proteins for SLMO2-ATP5E Gene

Gene Ontology (GO) - Biological Process for SLMO2-ATP5E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLMO2-ATP5E Gene

Drugs & Compounds for SLMO2-ATP5E Gene

No Compound Related Data Available

Transcripts for SLMO2-ATP5E Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SLMO2-ATP5E Gene

No ASD Table

Relevant External Links for SLMO2-ATP5E Gene

GeneLoc Exon Structure for
SLMO2-ATP5E

No data available for mRNA/cDNA for SLMO2-ATP5E Gene

Expression for SLMO2-ATP5E Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLMO2-ATP5E Gene

Orthologs for SLMO2-ATP5E Gene

No data available for Orthologs and Evolution for SLMO2-ATP5E Gene

Paralogs for SLMO2-ATP5E Gene

No data available for Paralogs for SLMO2-ATP5E Gene

Variants for SLMO2-ATP5E Gene

Sequence variations from dbSNP and Humsavar for SLMO2-ATP5E Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs387906929 Pathogenic 59,030,427(-) CAGCT(A/G)CATCC nc-transcript-variant, reference, missense
rs373113507 Uncertain significance 59,032,241(+) TCCAG(G/T)AGGCC intron-variant, reference, missense
rs201907184 Benign 59,032,276(+) TCGTC(A/G)GGCCG intron-variant, utr-variant-5-prime
rs374732925 Benign 59,032,297(+) ACGCC(A/C/G/T)GCAAT intron-variant, utr-variant-5-prime
rs45545036 Benign 59,032,205(+) CTCTG(A/G)AGGCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLMO2-ATP5E Gene

Variant ID Type Subtype PubMed ID
nsv965894 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SLMO2-ATP5E Gene

Disorders for SLMO2-ATP5E Gene

Relevant External Links for SLMO2-ATP5E

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLMO2-ATP5E

No disorders were found for SLMO2-ATP5E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLMO2-ATP5E Gene

Publications for SLMO2-ATP5E Gene

  1. A meta-analysis and genome-wide association study of platelet count and mean platelet volume in african americans. (PMID: 22423221) Qayyum R. … Reiner A.P. (PLoS Genet. 2012) 3 64
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64

Products for SLMO2-ATP5E Gene

Sources for SLMO2-ATP5E Gene

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