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Aliases for SLMO2 Gene

Aliases for SLMO2 Gene

  • Slowmo Homolog 2 (Drosophila) 2 3
  • C20orf45 3 4
  • Chromosome 20 Open Reading Frame 45 2
  • Protein Slowmo Homolog 2 3
  • DJ543J19.5 3
  • PRELID3B 3

External Ids for SLMO2 Gene

Previous Symbols for SLMO2 Gene

  • C20orf45

Summaries for SLMO2 Gene

GeneCards Summary for SLMO2 Gene

SLMO2 (Slowmo Homolog 2 (Drosophila)) is a Protein Coding gene. An important paralog of this gene is SLMO1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLMO2 Gene

Genomics for SLMO2 Gene

Genomic Location for SLMO2 Gene

Start:
59,033,145 bp from pter
End:
59,042,909 bp from pter
Size:
9,765 bases
Orientation:
Minus strand

Genomic View for SLMO2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLMO2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLMO2 Gene

Regulatory Elements for SLMO2 Gene

Proteins for SLMO2 Gene

  • Protein details for SLMO2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y3B1-SLMO2_HUMAN
    Recommended name:
    Protein slowmo homolog 2
    Protein Accession:
    Q9Y3B1
    Secondary Accessions:
    • E1P5I8
    • Q5JX17
    • Q9NUL0

    Protein attributes for SLMO2 Gene

    Size:
    194 amino acids
    Molecular mass:
    21495 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD34102.1; Type=Frameshift; Positions=192; Evidence={ECO:0000305};

    Alternative splice isoforms for SLMO2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLMO2 Gene

Proteomics data for SLMO2 Gene at MOPED

Post-translational modifications for SLMO2 Gene

No Post-translational modifications

Other Protein References for SLMO2 Gene

No data available for DME Specific Peptides for SLMO2 Gene

Domains for SLMO2 Gene

Protein Domains for SLMO2 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

SLMO2_HUMAN
Domain:
  • Contains 1 PRELI/MSF1 domain.:
    • Q9Y3B1
Family:
  • Belongs to the slowmo family.:
    • Q9Y3B1
genes like me logo Genes that share domains with SLMO2: view

No data available for Gene Families for SLMO2 Gene

Function for SLMO2 Gene

Gene Ontology (GO) - Molecular Function for SLMO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1990050 phosphatidic acid transporter activity IBA --
genes like me logo Genes that share ontologies with SLMO2: view

miRNA for SLMO2 Gene

miRTarBase miRNAs that target SLMO2

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SLMO2 Gene

Localization for SLMO2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLMO2 Gene COMPARTMENTS Subcellular localization image for SLMO2 gene
Compartment Confidence
cytosol 2
mitochondrion 2
nucleus 2

Gene Ontology (GO) - Cellular Components for SLMO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005758 mitochondrial intermembrane space IBA --
genes like me logo Genes that share ontologies with SLMO2: view

Pathways for SLMO2 Gene

SuperPathways for SLMO2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLMO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015914 phospholipid transport IBA --
genes like me logo Genes that share ontologies with SLMO2: view

No data available for Pathways by source for SLMO2 Gene

Transcripts for SLMO2 Gene

Unigene Clusters for SLMO2 Gene

Slowmo homolog 2 (Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLMO2 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b
SP1: - -
SP2: - - -
SP3: - - -
SP4: -
SP5: -
SP6:

Relevant External Links for SLMO2 Gene

GeneLoc Exon Structure for
SLMO2
ECgene alternative splicing isoforms for
SLMO2

Expression for SLMO2 Gene

mRNA expression in normal human tissues for SLMO2 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SLMO2 Gene

SOURCE GeneReport for Unigene cluster for SLMO2 Gene Hs.656865

genes like me logo Genes that share expressions with SLMO2: view

Orthologs for SLMO2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SLMO2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLMO2 36
  • 99.31 (n)
  • 99.48 (a)
SLMO2 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLMO2 36
  • 93.13 (n)
  • 96.91 (a)
SLMO2 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLMO2 36
  • 93.13 (n)
  • 97.42 (a)
SLMO2 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slmo2 36
  • 86.49 (n)
  • 95.79 (a)
Slmo2 16
Slmo2 37
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLMO2 37
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLMO2 37
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slmo2 36
  • 86.49 (n)
  • 95.26 (a)
chicken
(Gallus gallus)
Aves SLMO2 36
  • 80.58 (n)
  • 87.63 (a)
SLMO2 37
  • 87 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLMO2 37
  • 80 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.14591 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.67 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.4391 36
zebrafish
(Danio rerio)
Actinopterygii slmo2 36
  • 69.31 (n)
  • 82.54 (a)
slmo2 37
  • 82 (a)
OneToOne
wufd54c05 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008027 36
  • 54.89 (n)
  • 50.9 (a)
fruit fly
(Drosophila melanogaster)
Insecta slmo 36
  • 52.08 (n)
  • 55.68 (a)
slmo 37
  • 45 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F15D3.6 36
  • 52.79 (n)
  • 41.04 (a)
F15D3.6 37
  • 34 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL126C 36
  • 45.51 (n)
  • 38.92 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes UPS2 37
  • 26 (a)
ManyToMany
UPS2 39
UPS3 37
  • 30 (a)
ManyToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G13070 36
  • 46.83 (n)
  • 36.9 (a)
rice
(Oryza sativa)
Liliopsida Os02g0717900 36
  • 40.26 (n)
  • 35.39 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.655 37
  • 33 (a)
OneToMany
Species with no ortholog for SLMO2:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLMO2 Gene

ENSEMBL:
Gene Tree for SLMO2 (if available)
TreeFam:
Gene Tree for SLMO2 (if available)

Paralogs for SLMO2 Gene

Paralogs for SLMO2 Gene

Selected SIMAP similar genes for SLMO2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SLMO2: view

Variants for SLMO2 Gene

Relevant External Links for SLMO2 Gene

HapMap Linkage Disequilibrium report
SLMO2
Human Gene Mutation Database (HGMD)
SLMO2

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SLMO2 Gene

Disorders for SLMO2 Gene

Relevant External Links for SLMO2

Genetic Association Database (GAD)
SLMO2
Human Genome Epidemiology (HuGE) Navigator
SLMO2
genes like me logo Genes that share disorders with SLMO2: view

No data available for UniProtKB/Swiss-Prot for SLMO2 Gene

Publications for SLMO2 Gene

  1. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 49

Products for SLMO2 Gene

Sources for SLMO2 Gene

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