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Aliases for SLIT2-IT1 Gene

Subcategory (RNA class) for SLIT2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SLIT2-IT1 Gene

  • SLIT2 Intronic Transcript 1 2 3 5
  • SLIT2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SLIT2-IT1 Gene

Previous GeneCards Identifiers for SLIT2-IT1 Gene

  • GC04P020395
  • GC04P020396

Summaries for SLIT2-IT1 Gene

GeneCards Summary for SLIT2-IT1 Gene

SLIT2-IT1 (SLIT2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLIT2-IT1 Gene

Genomics for SLIT2-IT1 Gene

Regulatory Elements for SLIT2-IT1 Gene

Enhancers for SLIT2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F020418 0.9 Ensembl ENCODE 0.3 +26.7 26713 1.0 CTCF ZNF654 CEBPB TRIM22 REST RAD21 YY1 ZNF366 CEBPA SMC3 PACRGL SLIT2-IT1 GC04P020480
GH04F020429 0.7 Ensembl ENCODE 0.3 +38.8 38765 2.9 CTCF SCRT2 ZNF24 SLIT2-IT1 GC04P020480
GH04F020443 0.5 FANTOM5 0.2 +51.4 51441 0.1 ZNF362 RAD21 GC04P020480 SLIT2-IT1
GH04F020339 0.5 FANTOM5 0.2 -53.0 -52964 0.3 ZNF362 ZNF384 GC04P020382 SLIT2-IT1
GH04F020318 0.5 Ensembl 0.2 -73.7 -73689 0.2 SCRT1 SCRT2 TRIM28 SLIT2 GC04P020382 SLIT2-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLIT2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLIT2-IT1 Gene

20,392,189 bp from pter
20,394,856 bp from pter
2,668 bases
Plus strand

Genomic View for SLIT2-IT1 Gene

Genes around SLIT2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLIT2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLIT2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLIT2-IT1 Gene

Proteins for SLIT2-IT1 Gene

Post-translational modifications for SLIT2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLIT2-IT1 Gene

Domains & Families for SLIT2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLIT2-IT1 Gene

Function for SLIT2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLIT2-IT1 Gene

Localization for SLIT2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLIT2-IT1 Gene

Pathways & Interactions for SLIT2-IT1 Gene

SuperPathways for SLIT2-IT1 Gene

No Data Available

Interacting Proteins for SLIT2-IT1 Gene

Gene Ontology (GO) - Biological Process for SLIT2-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SLIT2-IT1 Gene

Transcripts for SLIT2-IT1 Gene

mRNA/cDNA for SLIT2-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLIT2-IT1 Gene

SLIT2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLIT2-IT1 Gene

No ASD Table

Relevant External Links for SLIT2-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SLIT2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLIT2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SLIT2-IT1 Gene

This gene is overexpressed in Testis (x49.4).

SOURCE GeneReport for Unigene cluster for SLIT2-IT1 Gene:

genes like me logo Genes that share expression patterns with SLIT2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLIT2-IT1 Gene

Orthologs for SLIT2-IT1 Gene

Evolution for SLIT2-IT1 Gene

Gene Tree for SLIT2-IT1 (if available)
Gene Tree for SLIT2-IT1 (if available)

No data available for Orthologs for SLIT2-IT1 Gene

Paralogs for SLIT2-IT1 Gene

No data available for Paralogs for SLIT2-IT1 Gene

Variants for SLIT2-IT1 Gene

Sequence variations from dbSNP and Humsavar for SLIT2-IT1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10000297 -- 20,390,284(+) AAAAA(A/T)TGCCG intron-variant, upstream-variant-2KB
rs112038588 -- 20,394,141(+) TTCAG(A/G)TGGTG intron-variant
rs112922269 -- 20,390,348(+) TATAA(A/G)TTACA intron-variant, upstream-variant-2KB
rs112957525 -- 20,394,737(+) AGAAG(A/G)CATTT intron-variant, nc-transcript-variant
rs114431570 -- 20,394,928(+) AGCTG(A/G)TTATG intron-variant

Relevant External Links for SLIT2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLIT2-IT1 Gene

Disorders for SLIT2-IT1 Gene

Relevant External Links for SLIT2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SLIT2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLIT2-IT1 Gene

Publications for SLIT2-IT1 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for SLIT2-IT1 Gene

Sources for SLIT2-IT1 Gene

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