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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLIT2 Gene

protein-coding   GIFtS: 65
GCID: GC04P020254

slit homolog 2 (Drosophila)

(Previous name: slit (Drosophila) homolog 2 )
(Previous symbol: SLIL3)
 Explore 27 diseases affiliated with
SLIT2 via our new
 Human Malady Compendium 
Biological research products
for SLIT2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Slit Homolog 2 (Drosophila)1 2
SLIL31 2 3
Slit-21 2 3
Slit (Drosophila) Homolog 21
Slit Homolog 2 Protein2

External Ids:    HGNC: 110861   Entrez Gene: 93532   Ensembl: ENSG000001451477   OMIM: 6037465   UniProtKB: O948133   

Export aliases for SLIT2 gene to outside databases

Previous GC identifers: GC04P020186 GC04P020338 GC04P019943 GC04P020006 GC04P019931 GC04P019604


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: SLIT2_HUMAN, O94813
Function: Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by
interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral
midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for
midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons
projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they
reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not
its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal
chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to
SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a
repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic
chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and
arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not
Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB
growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration

Gene Wiki entry for SLIT2


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_006316.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLIT2 gene promoter:
         TBP   STAT5A   Nkx2-5   E4BP4   AP-2gamma   AREB6   TFIID   Chx10   ARP-1   Msx-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLIT2 promoter sequence
   Search SABiosciences Chromatin IP Primers for SLIT2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLIT2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p15.2   Ensembl cytogenetic band:  4p15.31   HGNC cytogenetic band: 4p15.2

SLIT2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLIT2 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P020254:  view genomic region     (about GC identifiers)

Start:
20,254,883 bp from pter      End:
20,622,184 bp from pter
Size:
367,302 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SLIT2_HUMAN, O94813 (See protein sequence)
Recommended Name: Slit homolog 2 protein precursor  
Size: 1529 amino acids; 169870 Da
Subunit: Interacts with GREM1 (By similarity). Homodimer. Binds ROBO1 and ROBO2 with high affinity
Subcellular location: Secreted. Note=The C-terminal cleavage protein is more diffusible than the larger N-terminal
protein that is more tightly cell associated
4 PDB 3D structures from and Proteopedia for SLIT2:
2V70 (3D)        2V9S (3D)        2V9T (3D)        2WFH (3D)    
Secondary accessions: B7ZLR5 O95710 Q17RU3 Q9Y5Q7
Alternative splicing: 3 isoforms:  O94813-1   O94813-2   O94813-3   

Explore the universe of human proteins at neXtProt for SLIT2: NX_O94813

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O94813

  • SLIT2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_004778.1  
    ENSEMBL proteins: 
     ENSP00000427548   ENSP00000422591   ENSP00000273739   ENSP00000422261   ENSP00000426356  
     ENSP00000421975   ENSP00000425609   ENSP00000423179  
    Reactome Protein details: O94813
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
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    OriGene Purified Protein: SLIT2
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    Novus Biologicals SLIT2 Protein
    Novus Biologicals SLIT2 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Uscn

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005615extracellular space IDA10102268
    GO:0005737cytoplasm IDA18566128
    GO:0005886plasma membrane TAS--
    GO:0009986cell surface IDA10102268


    SLIT2 for ontologies           About GeneDecksing



    SLIT2 Antibody Products: 
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    Assay Products for SLIT2: 
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    Browse R&D Systems for biochemical assays
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    Browse ELISAs and CLIAs at Uscn


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    SLIT2 for domains           About GeneDecksing

    5/14 InterPro domains/families (see all 14):
     IPR000483 Cys-rich_flank_reg_C
     IPR000372 LRR-contain_N
     IPR001881 EGF-like_Ca-bd
     IPR001611 Leu-rich_rpt
     IPR000742 EG-like_dom

    Graphical View of Domain Structure for InterPro Entry O94813

    ProtoNet protein and cluster: O94813

    5/7 Blocks protein families (see all 7):
    IPB000152 Aspartic acid and asparagine hydroxylation site
    IPB000372 Cysteine-rich flanking region
    IPB000483 Cysteine-rich flanking region
    IPB001611 Leucine-rich repeat signature
    IPB001791 Laminin G


    UniProtKB/Swiss-Prot: SLIT2_HUMAN, O94813
    Domain: The leucine-rich repeat domain is sufficient for guiding both axon projection and neuronal migration, in vitro
    Similarity: Contains 1 CTCK (C-terminal cystine knot-like) domain
    Similarity: Contains 7 EGF-like domains
    Similarity: Contains 1 laminin G-like domain
    Similarity: Contains 20 LRR (leucine-rich) repeats
    Similarity: Contains 4 LRRCT domains
    Similarity: Contains 4 LRRNT domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: SLIT2_HUMAN, O94813
    Function: Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by
    interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral
    midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for
    midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons
    projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they
    reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not
    its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal
    chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to
    SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a
    repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic
    chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and
    arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not
    Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB
    growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration

         Genatlas biochemistry entry for SLIT2:
    SLIT Drosophila homolog 2,expressed in the spinal cord,involved in early body axis formation and cell patterning of the
    neural-tube

         Summary:  
    During embryonic development, SLIT2 as signaling molecule
    affects the following cells: Embryonic Dopaminergic Neurons in Substantia Nigra pars Compacta, Embryonic Dopaminergic Neurons in Substantia Nigra pars Compacta (see all 5).

    miRNA
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    8 QIAGEN miScript miRNA Assays for microRNAs that regulate SLIT2:
    hsa-miR-3671 hsa-miR-338-5p hsa-miR-607 hsa-miR-205* hsa-miR-1264 hsa-miR-26b* hsa-miR-548c-3p hsa-miR-3692
    SwitchGear 3'UTR luciferase reporter plasmidSLIT2 3' UTR sequence
    Inhib. RNA
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    Gene Editing
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    Clone
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLIT2

    Gene Ontology (GO): 5/9 molecular function terms (GO ID links to tree view) (see all 9):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005095GTPase inhibitor activity IDA19759280
    GO:0005509calcium ion binding NAS9813312
    GO:0005515protein binding IPI10102268
    GO:0008201heparin binding IDA17062560
    GO:0042803protein homodimerization activity IDA19498462


    SLIT2 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for SLIT2:
     Cell cycle / mitosis defect 

    Animal Models:
         Mouse knock-out Slit2tm1Matl for SLIT2
         5 MGI mutant phenotypes (inferred from 1 allele(MGI details for Slit2):
     cellular  embryogenesis  mortality/aging  nervous system  renal/urinary system 

    SLIT2 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/11 super-pathways (see all 11About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Axon guidance
    Inactivation of Cdc42 and Rac1.00
    Inactivation of Cdc42 and Rac0.56
    Axon guidance1.00
    2Activation of Rac
    Activation of Rac1.00
    Signaling by Robo receptor0.44
    3Axon guidance
    Axon guidance1.00
    Developmental Biology0.69
    4Cytoskeleton remodeling Slit-Robo signaling
    Cytoskeleton remodeling Slit-Robo signaling1.00
    Development_Slit-Robo signaling0.92
    5Regulation of Commissural axon pathfinding by Slit and Robo
    Regulation of Commissural axon pathfinding by Slit and Robo1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for SLIT2
        Cytoskeleton remodeling Slit-Robo signaling

    2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for SLIT2
        Guidance Cues and Growth Cone Motility
    Signaling by Slit

    1 GeneGo (Thomson Reuters) Pathway for SLIT2
        Development Slit-Robo signaling

    1 BioSystems Pathway for SLIT2 
        Glypican 1 network

    5/10        Reactome Pathways for SLIT2 (see all 10)
        Regulation of Commissural axon pathfinding by Slit and Robo
    Developmental Biology
    Role of Abl in Robo-Slit signaling
    Signaling by Robo receptor
    Activation of Rac


    1         Kegg Pathway  (Kegg details for SLIT2):
        Axon guidance


    SLIT2 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLIT2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 24)

    5/34 Interacting proteins for SLIT2 (O948132, 3 ENSP000002737394) via UniProtKB, MINT, STRING, and/or I2D (see all 34)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GPC1P350523, ENSP000002640394I2D: score=3 STRING: ENSP00000264039
    MYCP011063, ENSP000003672074I2D: score=3 STRING: ENSP00000367207
    ABL2P426843, ENSP000003565954I2D: score=1 STRING: ENSP00000356595
    ENAHQ8N8S73, ENSP000003558094I2D: score=1 STRING: ENSP00000355809
    ROBO4Q8WZ753, ENSP000003049454I2D: score=1 STRING: ENSP00000304945
    About this table

    Gene Ontology (GO): 5/48 biological process terms (GO ID links to tree view) (see all 48):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001656metanephros development IEA--
    GO:0001657ureteric bud development IMP15130495
    GO:0001701in utero embryonic development IEA--
    GO:0001933negative regulation of protein phosphorylation IDA18345009
    GO:0002042cell migration involved in sprouting angiogenesis IMP19351956


    SLIT2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    SLIT2 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLIT2
    1 Novoseek chemical compound relationship for SLIT2 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    5-aza-2'deoxycytidine 60.8 3 12881718 (1), 12615722 (1)

    Search CenterWatch for drugs/clinical trials and news about SLIT2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SLIT2 gene: 
    NM_004787.1  

    Unigene Cluster for SLIT2:

    Slit homolog 2 (Drosophila)
    Hs.29802  [show with all ESTs]
    Unigene Representative Sequence: AF055585
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000503823 ENST00000504154(uc003gpr.1) ENST00000273739(uc003gps.1)
    ENST00000503837 ENST00000508824 ENST00000509099 ENST00000509394 ENST00000511508
    ENST00000509941 ENST00000512993 ENST00000508541

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    hsa-miR-3671 hsa-miR-338-5p hsa-miR-607 hsa-miR-205* hsa-miR-1264 hsa-miR-26b* hsa-miR-548c-3p hsa-miR-3692
    SwitchGear 3'UTR luciferase reporter plasmidSLIT2 3' UTR sequence
    Inhib. RNA
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    Additional cDNA sequence: 

    AB017168.1 AF055585.1 AF133270.1 AK027326.1 AK126459.1 AK308444.1 BC117190.1 BC143978.1 

    5 DOTS entries:

    DT.100743844  DT.313020  DT.412654  DT.99996021  DT.102825342 

    24/83 AceView cDNA sequences (see all 83):

    BM554858 BM970707 AB017168 AK126459 BU682523 BU147452 AK027326 CA395227 
    AI086363 NM_004787 BI494498 AI090944 AA486868 AI434815 BQ708856 AI955702 
    AI088202 AF055585 AI379631 AW264567 BX509816 BQ015028 AA845944 BG484345 

    GeneLoc Exon Structure

    5/8 Alternative Splicing Database (ASD) splice patterns (SP) for SLIT2 (see all 8)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22a · 22b ^
    SP1:                                      -     -     -     -                             -                                                           -         
    SP2:                                      -     -     -     -                             -                                         -                 -         
    SP3:                                      -     -     -     -                                                                       -                 -         
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 23a · 23b ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31a · 31b ^ 32 ^ 33 ^ 34a · 34b ^ 35 ^ 36 ^ 37 ^ 38 ^ 39 ^ 40a · 40b ^ 41 ^ 42a · 42b
    SP1:                                                  -                                   -                                   -                           
    SP2:                                                  -                                   -                                   -                           
    SP3:                                                  -                                   -                                   -                           
    SP4:                                                                                                                                                      
    SP5:                                                                                                                                                      


    ECgene alternative splicing isoforms for SLIT2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLIT2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGGGACTAAT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    SLIT2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    4 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BrainHypothalamusBrain
    Neural TubeDiencephalic Ventricular ZoneNeural Tube
    Neural TubeDiencephalonNeural Tube
    Neural TubeTelencephalonNeural Tube
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    PureStem™ progenitor E44 (Embryonic Progenitor Cell)
    Blimp1- mVenus and stella-ECFP genetically modified stem cells (Embryonic Stem Cell)Early Embryo, Inner Cell Mass

    See SLIT2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLIT2

    SOURCE GeneReport for Unigene cluster: Hs.29802

    UniProtKB/Swiss-Prot: SLIT2_HUMAN, O94813
    Tissue specificity: Fetal lung and kidney, and adult spinal cord. Weak expression in adult adrenal gland, thyroid,
    trachea and other tissues examined

        SABiosciences Expression via Pathway-Focused PCR Arrays including SLIT2: 
              Neurogenesis in human mouse rat
              Lung Cancer in human mouse rat
              Breast Cancer in human mouse rat
              Chemokines & Receptors in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for SLIT2 gene from 6/22 species (see all 22)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves SLIT21 slit homolog 2 (Drosophila) 82.63(n)
    93.57(a)
      373967  XM_001232040.2  XP_001232041.1 
    lizard
    (Anolis carolinensis)
    Reptilia SLIT26
    --
    92(a)
    1 ↔ 1
    5(75617983-75737578)
    African clawed frog
    (Xenopus laevis)
    Amphibia AY046070.12   -- 78.64(n)    AY046070.1 
    zebrafish
    (Danio rerio)
    Actinopterygii slit22 slit (Drosophila) homolog 2 74.37(n)   80353  AF210321.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta sli1 , 3 axon guidance3
    slit1
    43(a)
    (best of 2)3
    52.08(n)1
    47.49(a)1
      367461  NM_057379.31  NP_476727.11 
    worm
    (Caenorhabditis elegans)
    Secernentea slt-11 Protein SLT-1 48.44(n)
    40.47(a)
      181562  NM_078036.4  NP_510437.2 


    ENSEMBL Gene Tree for SLIT2 (if available)
    TreeFam Gene Tree for SLIT2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SLIT2 gene
    LRRC262  ISLR2  LRIT22  LRRC172  SLIT12  LRRC522  LRTM12  LRIT12  
    LRTM22  ISLR22  LRIT32  LRRC552  SLIT32  LRRC242  LRRC382  
    18/41 SIMAP similar genes for SLIT2 using alignment to 7 protein entries:     SLIT2_HUMAN (see all proteins) (see all similar genes):
    SLIT1    SLIT3    NOTCH3    F9    DCN    PODN
    PODNL1    LINGO2    BGN    LRRC15    ASPN    FAT3
    LINGO1    LGR6    LRRTM4    NGL1    CRB1    ISLR2

    SLIT2 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for SLIT2
    PGOHUM00000245861


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 13 variations for SLIT2
         11 CNVs: 1667 10039 43239 63769 51359 4380 98646 37871 51361 91964 51360
         2 Indels: 40606 91965
    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SLIT2 for disorders           About GeneDecksing

    OMIM gene information: 603746    OMIM disorders: --

    20/27 diseases for SLIT2 (see all 27):    About MalaCards
    female breast cancer    acute lymphocytic leukemia    lymphocytic leukemia    renal cell carcinoma
    squamous cell carcinoma    pulmonary fibrosis    pandas    breast cancer
    colorectal cancer    fibrosarcoma    medulloblastoma    fibrosis
    hepatocellular carcinoma    cervical cancer    cervicitis    ovarian cancer
    pharyngitis    nasopharyngitis    carcinoma    influenza

    6 Novoseek disease relationships for SLIT2 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    glioma 46.2 39 12881718 (9), 20008733 (7), 17968499 (5), 15534609 (2) (see all 5)
    colorectal carcinoma 31 1 12615722 (1)
    cancer 23.4 9 14735202 (2), 18201275 (1), 18566128 (1), 20008733 (1) (see all 5)
    colorectal cancer 21.6 6 12615722 (4), 15534609 (1)
    breast cancer 13.9 13 12384551 (6), 17268810 (2), 15534609 (1), 14735202 (1)
    tumors 8.71 19 12384551 (6), 12615722 (3), 18201275 (2), 16685377 (2) (see all 5)

    Genetic Association Database (GAD): SLIT2
    Human Genome Epidemiology (HuGE) Navigator: SLIT2 (17 documents)

    Export disorders for SLIT2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLIT2 gene, integrated from 9 sources (see all 100):
    (articles sorted by number of sources associating them with SLIT2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and expressions of three mammalian homologues of Drosophila slit suggest possible roles for Slit in the formation and maintenance of the nervous system. (PubMed id 9813312)1, 2, 3 Itoh A.... Sakano S. (1998)
    2. Frequent epigenetic inactivation of the SLIT2 gene in gliomas. (PubMed id 12881718)1, 4, 9 Dallol A....Latif F. (2003)
    3. Slit2 is a repellent for retinal ganglion cell axons. (PubMed id 10864954)1, 2, 9 Niclou S.P.... Raper J.A. (2000)
    4. Structural insights into the Slit-Robo complex. (PubMed id 17848514)1, 2, 9 Morlot C.... McCarthy A.A. (2007)
    5. Distinct but overlapping expression patterns of two vertebrate slit homologs implies functional roles in CNS development and organogenesis. (PubMed id 10349621)1, 2, 9 Holmes G.P....Little M.H. (1998)
    6. Structure and functional relevance of the Slit2 homod imerization domain. (PubMed id 19498462)1, 2 Seiradake E....McCarthy A.A. (2009)
    7. Slits and their receptors. (PubMed id 18269211)1, 3 Chedotal A. (2007)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    9. Slit proteins: molecular guidance cues for cells ranging from neurons to leukocytes. (PubMed id 12200164)1, 2 Wong K.... Rao Y. (2002)
    10. Hierarchical organization of guidance receptors: silencing of netrin attraction by slit through a Robo/DCC receptor complex. (PubMed id 11239147)1, 2 Stein E. and Tessier-Lavigne M. (2001)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9353 HGNC: 11086 AceView: SLIT2 Ensembl:ENSG00000145147 euGenes: HUgn9353
    ECgene: SLIT2 Kegg: 9353 H-InvDB: SLIT2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLIT2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for SLIT2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SLIT2 gene:
    Search GeneIP for patents involving SLIT2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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