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Aliases for SLED1 Gene

Subcategory (RNA class) for SLED1 Gene

lncRNA

Aliases for SLED1 Gene

  • Proteoglycan 3 Pseudogene 3
  • RTFV9368 3

External Ids for SLED1 Gene

ORGUL Members for SLED1 Gene

Summaries for SLED1 Gene

GeneCards Summary for SLED1 Gene

SLED1 (Proteoglycan 3 Pseudogene) is a Pseudogene, and belongs to lncRNA RNA class. Diseases associated with SLED1 include systemic lupus erythematosus.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLED1 Gene

Genomics for SLED1 Gene

Genomic Location for SLED1 Gene

Start:
184,798,296 bp from pter
End:
184,799,046 bp from pter
Size:
751 bases
Orientation:
Minus strand

Genomic View for SLED1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLED1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLED1 Gene

Regulatory Elements for SLED1 Gene

Proteins for SLED1 Gene

  • Protein details for SLED1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6UXS7-Q6UXS7
    Recommended name:
    RTFV9368
    Protein Accession:
    Q6UXS7
    Secondary Accessions:

    Protein attributes for SLED1 Gene

    Size:
    120 amino acids
    Molecular mass:
    13039 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLED1 Gene

Proteomics data for SLED1 Gene at MOPED

Post-translational modifications for SLED1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLED1 Gene

Domains for SLED1 Gene

Protein Domains for SLED1 Gene

genes like me logo Genes that share domains with SLED1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SLED1 Gene

Function for SLED1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SLED1 Gene

Localization for SLED1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SLED1 Gene

Pathways for SLED1 Gene

SuperPathways for SLED1 Gene

No Data Available

Interacting Proteins for SLED1 Gene

Gene Ontology (GO) - Biological Process for SLED1 Gene

None

No data available for Pathways by source for SLED1 Gene

Transcripts for SLED1 Gene

mRNA/cDNA for SLED1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLED1 Gene

No ASD Table

Relevant External Links for SLED1 Gene

GeneLoc Exon Structure for
SLED1

Expression for SLED1 Gene

mRNA expression in normal human tissues for SLED1 Gene

mRNA differential expression in normal tissues according to GTEx for SLED1 Gene

This gene is overexpressed in Whole Blood (30.9).

SOURCE GeneReport for Unigene cluster for SLED1 Gene Hs.689630

genes like me logo Genes that share expressions with SLED1: view

Orthologs for SLED1 Gene

Evolution for SLED1 Gene

ENSEMBL:
Gene Tree for SLED1 (if available)
TreeFam:
Gene Tree for SLED1 (if available)

No data available for Orthologs for SLED1 Gene

Paralogs for SLED1 Gene

Selected SIMAP similar genes for SLED1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLED1: view

No data available for Paralogs for SLED1 Gene

Variants for SLED1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLED1 Gene

Variant ID Type Subtype PubMed ID
nsv830168 CNV Loss 17160897

Relevant External Links for SLED1 Gene

HapMap Linkage Disequilibrium report
SLED1

No data available for Sequence variations from dbSNP and Humsavar for SLED1 Gene

Disorders for SLED1 Gene

Relevant External Links for SLED1

Genetic Association Database (GAD)
SLED1
genes like me logo Genes that share disorders with SLED1: view

No data available for UniProtKB/Swiss-Prot for SLED1 Gene

Publications for SLED1 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3
  2. Isolation and expression profiling of genes upregulated in the peripheral blood cells of systemic lupus erythematosus patients. (PMID: 16769699) Ishii T. … Nojima H. (DNA Res. 2005) 3

Products for SLED1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SLED1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SLED1
    • Block miRNA regulation of SLED1 using miScript Target Protectors

    Sources for SLED1 Gene

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