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Aliases for SLED1 Gene

Subcategory (RNA class) for SLED1 Gene

lncRNA

Aliases for SLED1 Gene

  • Proteoglycan 3 Pseudogene 3 5
  • RTFV9368 3

External Ids for SLED1 Gene

ORGUL Members for SLED1 Gene

Previous GeneCards Identifiers for SLED1 Gene

  • GC04M185719

Summaries for SLED1 Gene

GeneCards Summary for SLED1 Gene

SLED1 (Proteoglycan 3 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLED1 Gene

Genomics for SLED1 Gene

Regulatory Elements for SLED1 Gene

Enhancers for SLED1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G184799 0.9 dbSUPER 0.7 -1.5 -1511 2.3 FOXA2 ARID4B FEZF1 YY1 ZNF488 ZNF518A PPARG KAT8 NFIL3 SSRP1 ACSL1 PRIMPOL CASP3 CENPU SLED1 ENSG00000251139
GH04G184794 0.8 ENCODE dbSUPER 0.7 +3.8 3791 1.1 JUND ZFHX2 SMARCA4 EGR2 ACSL1 PRIMPOL CASP3 CENPU SLED1 PIR41861
GH04G184807 1.4 Ensembl ENCODE dbSUPER 0.4 -9.2 -9152 1.6 FOXA2 MLX ZSCAN4 INSM2 ARID4B FEZF1 RARA SCRT2 FOS CREM CASP3 PRIMPOL ENSG00000251139 SLED1
GH04G184791 1.4 Ensembl ENCODE dbSUPER 0.4 +6.2 6248 2.3 FOXA2 ARID4B DMAP1 ZNF48 YY1 GATA2 FOS PPARG NFIL3 MIER3 ENSG00000251139 ACSL1 CASP3 PRIMPOL MIR3945HG CENPU SLED1 PIR41861
GH04G184802 0.7 ENCODE dbSUPER 0.7 -3.6 -3600 0.7 ZNF335 YY1 ACSL1 MIR3945HG CENPU SLED1 ENSG00000251139
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLED1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLED1 Gene

Chromosome:
4
Start:
184,798,296 bp from pter
End:
184,799,046 bp from pter
Size:
751 bases
Orientation:
Minus strand

Genomic View for SLED1 Gene

Genes around SLED1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLED1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLED1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLED1 Gene

Proteins for SLED1 Gene

  • Protein details for SLED1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6UXS7
    Recommended name:
    RTFV9368
    Protein Accession:
    Q6UXS7

    Protein attributes for SLED1 Gene

    Size:
    120 amino acids
    Molecular mass:
    13039 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLED1 Gene

Post-translational modifications for SLED1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLED1 Gene

Domains & Families for SLED1 Gene

Suggested Antigen Peptide Sequences for SLED1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SLED1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SLED1 Gene

Function for SLED1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLED1 Gene

Localization for SLED1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLED1 Gene

Pathways & Interactions for SLED1 Gene

SuperPathways for SLED1 Gene

No Data Available

Interacting Proteins for SLED1 Gene

Gene Ontology (GO) - Biological Process for SLED1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLED1 Gene

Drugs & Compounds for SLED1 Gene

No Compound Related Data Available

Transcripts for SLED1 Gene

mRNA/cDNA for SLED1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLED1 Gene

No ASD Table

Relevant External Links for SLED1 Gene

GeneLoc Exon Structure for
SLED1

Expression for SLED1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLED1 Gene

mRNA differential expression in normal tissues according to GTEx for SLED1 Gene

This gene is overexpressed in Whole Blood (x30.9).

SOURCE GeneReport for Unigene cluster for SLED1 Gene:

Hs.689630
genes like me logo Genes that share expression patterns with SLED1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLED1 Gene

Orthologs for SLED1 Gene

Evolution for SLED1 Gene

ENSEMBL:
Gene Tree for SLED1 (if available)
TreeFam:
Gene Tree for SLED1 (if available)

No data available for Orthologs for SLED1 Gene

Paralogs for SLED1 Gene

(2) SIMAP similar genes for SLED1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLED1: view

No data available for Paralogs for SLED1 Gene

Variants for SLED1 Gene

Sequence variations from dbSNP and Humsavar for SLED1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1001294793 -- 184,799,663(+) GGCAA(C/T)ACAGC intron-variant, upstream-variant-2KB
rs1001410404 -- 184,799,952(+) GTTTA(C/T)TGCCC intron-variant, upstream-variant-2KB
rs1001649436 -- 184,799,072(+) TTTCA(C/G)AGTCC intron-variant, upstream-variant-2KB
rs1002251068 -- 184,800,443(+) CTAGG(C/G)GGCCA intron-variant, upstream-variant-2KB
rs1003533225 -- 184,798,762(+) TGGAG(G/T)TGTAG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SLED1 Gene

Variant ID Type Subtype PubMed ID
esv3376279 CNV duplication 20981092
esv3603469 CNV gain 21293372
esv3603470 CNV gain 21293372
nsv830168 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SLED1 Gene

Disorders for SLED1 Gene

Relevant External Links for SLED1

Genetic Association Database (GAD)
SLED1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLED1

No disorders were found for SLED1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLED1 Gene

Publications for SLED1 Gene

  1. Isolation and expression profiling of genes upregulated in the peripheral blood cells of systemic lupus erythematosus patients. (PMID: 16769699) Ishii T. … Nojima H. (DNA Res. 2005) 3 64
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 64

Products for SLED1 Gene

Sources for SLED1 Gene

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