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Aliases for SLCO4C1 Gene

Aliases for SLCO4C1 Gene

  • Solute Carrier Organic Anion Transporter Family Member 4C1 2 3 5
  • Solute Carrier Organic Anion Transporter Family, Member 4C1 2 3
  • Solute Carrier Family 21 Member 20 3 4
  • Organic Anion Transporter M1 3 4
  • SLC21A20 3 4
  • OATP-M1 3 4
  • OATP4C1 3 4
  • OATP-H 3 4
  • OATPX 3 4
  • PRO2176 3

External Ids for SLCO4C1 Gene

Previous GeneCards Identifiers for SLCO4C1 Gene

  • GC05M101647
  • GC05M101645
  • GC05M101597
  • GC05M096752

Summaries for SLCO4C1 Gene

Entrez Gene Summary for SLCO4C1 Gene

  • SLCO4C1 belongs to the organic anion transporter (OATP) family. OATPs are involved in the membrane transport of bile acids, conjugated steroids, thyroid hormone, eicosanoids, peptides, and numerous drugs in many tissues (Mikkaichi et al., 2004 [PubMed 14993604]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SLCO4C1 Gene

SLCO4C1 (Solute Carrier Organic Anion Transporter Family Member 4C1) is a Protein Coding gene. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds and Transport of vitamins, nucleosides, and related molecules. GO annotations related to this gene include transporter activity. An important paralog of this gene is SLCO1B7.

UniProtKB/Swiss-Prot for SLCO4C1 Gene

  • Organic anion transporter, capable of transporting pharmacological substances such as digoxin, ouabain, thyroxine, methotrexate and cAMP. May participate in the regulation of membrane transport of ouabain. Involved in the uptake of the dipeptidyl peptidase-4 inhibitor sitagliptin and hence may play a role in its transport into and out of renal proximal tubule cells. May be involved in the first step of the transport pathway of digoxin and various compounds into the urine in the kidney. May be involved in sperm maturation by enabling directed movement of organic anions and compounds within or between cells. This ion-transporting process is important to maintain the strict epididymal homeostasis necessary for sperm maturation. May have a role in secretory functions since seminal vesicle epithelial cells are assumed to secrete proteins involved in decapacitation by modifying surface proteins to facilitate the acquisition of the ability to fertilize the egg.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLCO4C1 Gene

Genomics for SLCO4C1 Gene

Regulatory Elements for SLCO4C1 Gene

Enhancers for SLCO4C1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SLCO4C1 on UCSC Golden Path with GeneCards custom track

Promoters for SLCO4C1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLCO4C1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLCO4C1 Gene

Chromosome:
5
Start:
102,233,986 bp from pter
End:
102,296,549 bp from pter
Size:
62,564 bases
Orientation:
Minus strand

Genomic View for SLCO4C1 Gene

Genes around SLCO4C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLCO4C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLCO4C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLCO4C1 Gene

Proteins for SLCO4C1 Gene

  • Protein details for SLCO4C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQN7-SO4C1_HUMAN
    Recommended name:
    Solute carrier organic anion transporter family member 4C1
    Protein Accession:
    Q6ZQN7
    Secondary Accessions:
    • Q86UG5

    Protein attributes for SLCO4C1 Gene

    Size:
    724 amino acids
    Molecular mass:
    78948 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • SLCO4C1-mediated digoxin uptake is inhibited by digoxin itself and related compounds such as ouabain, digitoxin and digoxigenin.

neXtProt entry for SLCO4C1 Gene

Proteomics data for SLCO4C1 Gene at MOPED

Post-translational modifications for SLCO4C1 Gene

  • Glycosylation at Thr 557
  • Modification sites at PhosphoSitePlus

Other Protein References for SLCO4C1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SLCO4C1 Gene

Domains & Families for SLCO4C1 Gene

Gene Families for SLCO4C1 Gene

Suggested Antigen Peptide Sequences for SLCO4C1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZQN7

UniProtKB/Swiss-Prot:

SO4C1_HUMAN :
  • Contains 1 Kazal-like domain.
  • Belongs to the organo anion transporter (TC 2.A.60) family.
Domain:
  • Contains 1 Kazal-like domain.
Family:
  • Belongs to the organo anion transporter (TC 2.A.60) family.
genes like me logo Genes that share domains with SLCO4C1: view

Function for SLCO4C1 Gene

Molecular function for SLCO4C1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=7.8 uM for digoxin {ECO:0000269 PubMed:14993604}; KM=0.38 uM for ouabain {ECO:0000269 PubMed:14993604}; KM=5.9 uM for thyroxine {ECO:0000269 PubMed:14993604};
UniProtKB/Swiss-Prot Function:
Organic anion transporter, capable of transporting pharmacological substances such as digoxin, ouabain, thyroxine, methotrexate and cAMP. May participate in the regulation of membrane transport of ouabain. Involved in the uptake of the dipeptidyl peptidase-4 inhibitor sitagliptin and hence may play a role in its transport into and out of renal proximal tubule cells. May be involved in the first step of the transport pathway of digoxin and various compounds into the urine in the kidney. May be involved in sperm maturation by enabling directed movement of organic anions and compounds within or between cells. This ion-transporting process is important to maintain the strict epididymal homeostasis necessary for sperm maturation. May have a role in secretory functions since seminal vesicle epithelial cells are assumed to secrete proteins involved in decapacitation by modifying surface proteins to facilitate the acquisition of the ability to fertilize the egg.
genes like me logo Genes that share phenotypes with SLCO4C1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLCO4C1

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLCO4C1 Gene

Localization for SLCO4C1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLCO4C1 Gene

Basolateral cell membrane; Multi-pass membrane protein. Note=Detected at the basolateral membrane of the proximal tubule cell in the kidney. {ECO:0000250 UniProtKB:Q71MB6}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLCO4C1 Gene COMPARTMENTS Subcellular localization image for SLCO4C1 gene
Compartment Confidence
extracellular 5
plasma membrane 5
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for SLCO4C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with SLCO4C1: view

Pathways & Interactions for SLCO4C1 Gene

genes like me logo Genes that share pathways with SLCO4C1: view

Interacting Proteins for SLCO4C1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000309741%0d%0a9606.ENSP00000260983%0d%0a
Selected Interacting proteins: ENSP00000309741 for SLCO4C1 Gene via STRING

Symbol External ID(s) Details
HECW2

Gene Ontology (GO) - Biological Process for SLCO4C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0007275 multicellular organism development IEA --
GO:0007283 spermatogenesis IEA --
genes like me logo Genes that share ontologies with SLCO4C1: view

No data available for SIGNOR curated interactions for SLCO4C1 Gene

Drugs & Compounds for SLCO4C1 Gene

(11) Drugs for SLCO4C1 Gene - From: DrugBank, DGIdb, IUPHAR, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Digitoxin Approved Pharma Transporter, inhibitor 2
Digoxin Approved Pharma Transporter, inhibitor 130
Liotrix Approved Pharma Transporter, substrate 0
Ouabain Approved Pharma Transporter, substrate 0
Dextrothyroxine Approved Pharma Transporter 0
genes like me logo Genes that share compounds with SLCO4C1: view

Transcripts for SLCO4C1 Gene

mRNA/cDNA for SLCO4C1 Gene

Unigene Clusters for SLCO4C1 Gene

Solute carrier organic anion transporter family, member 4C1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLCO4C1 Gene

No ASD Table

Relevant External Links for SLCO4C1 Gene

GeneLoc Exon Structure for
SLCO4C1
ECgene alternative splicing isoforms for
SLCO4C1

Expression for SLCO4C1 Gene

mRNA expression in normal human tissues for SLCO4C1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SLCO4C1 Gene

This gene is overexpressed in Whole Blood (x13.7), Kidney - Cortex (x11.0), and Lung (x8.1).

Protein differential expression in normal tissues from HIPED for SLCO4C1 Gene

This gene is overexpressed in Nasal epithelium (64.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SLCO4C1 Gene



SOURCE GeneReport for Unigene cluster for SLCO4C1 Gene Hs.127648

mRNA Expression by UniProt/SwissProt for SLCO4C1 Gene

Q6ZQN7-SO4C1_HUMAN
Tissue specificity: Predominantly expressed in kidney but also weakly expressed in both fetal liver and kidney.
genes like me logo Genes that share expression patterns with SLCO4C1: view

Primer Products

No data available for Protein tissue co-expression partners for SLCO4C1 Gene

Orthologs for SLCO4C1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLCO4C1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLCO4C1 35
  • 81.39 (n)
  • 74.19 (a)
SLCO4C1 36
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLCO4C1 35
  • 86.59 (n)
  • 81.43 (a)
SLCO4C1 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slco4c1 35
  • 81.92 (n)
  • 80.75 (a)
Slco4c1 16
Slco4c1 36
  • 81 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLCO4C1 35
  • 99.26 (n)
  • 99.45 (a)
SLCO4C1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slco4c1 35
  • 80.53 (n)
  • 80.36 (a)
oppossum
(Monodelphis domestica)
Mammalia SLCO4C1 36
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
OneToMany
chicken
(Gallus gallus)
Aves SLCO4C1 35
  • 67.69 (n)
  • 65.9 (a)
-- 36
  • 63 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 43 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia slco4c1 35
  • 64.07 (n)
  • 59.08 (a)
fruit fly
(Drosophila melanogaster)
Insecta Oatp33Eb 36
  • 16 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea F53B1.8 35
  • 44.09 (n)
  • 33.03 (a)
F53B1.8 36
  • 25 (a)
ManyToMany
K02G10.5 36
  • 25 (a)
ManyToMany
Y70G10A.3 36
  • 27 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 35 (a)
ManyToMany
-- 36
  • 38 (a)
ManyToMany
-- 36
  • 41 (a)
ManyToMany
Species with no ortholog for SLCO4C1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for SLCO4C1 Gene

ENSEMBL:
Gene Tree for SLCO4C1 (if available)
TreeFam:
Gene Tree for SLCO4C1 (if available)

Paralogs for SLCO4C1 Gene

(13) SIMAP similar genes for SLCO4C1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLCO4C1: view

Variants for SLCO4C1 Gene

Sequence variations from dbSNP and Humsavar for SLCO4C1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs709369 -- 102,288,632(-) GGTAG(A/G)CACTA intron-variant
rs709370 -- 102,288,689(-) GGAAT(A/T)GTCCG intron-variant
rs709371 -- 102,289,355(-) GCTTC(C/T)TCTCT intron-variant
rs709372 -- 102,289,450(-) TAAAC(A/G)AACCT intron-variant
rs841752 -- 102,261,263(-) GGCTA(A/C)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLCO4C1 Gene

Variant ID Type Subtype PubMed ID
nsv882505 CNV Loss 21882294
nsv507279 CNV Insertion 20534489
nsv522882 CNV Loss 19592680
esv268733 CNV Insertion 20981092
esv2678701 CNV Deletion 23128226

Variation tolerance for SLCO4C1 Gene

Residual Variation Intolerance Score: 9.29% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.10; 50.99% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SLCO4C1 Gene

Disorders for SLCO4C1 Gene

Relevant External Links for SLCO4C1

Genetic Association Database (GAD)
SLCO4C1
Human Genome Epidemiology (HuGE) Navigator
SLCO4C1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLCO4C1

No disorders were found for SLCO4C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLCO4C1 Gene

Publications for SLCO4C1 Gene

  1. Isolation and characterization of a digoxin transporter and its rat homologue expressed in the kidney. (PMID: 14993604) Mikkaichi T. … Abe T. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 23 25 26 67
  2. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3
  3. The HECT type ubiquitin ligase NEDL2 is degraded by anaphase-promoting complex/cyclosome (APC/C)-Cdh1, and its tight regulation maintains the metaphase to anaphase transition. (PMID: 24163370) Lu L. … Zhang L. (J. Biol. Chem. 2013) 3
  4. Comparative clinical pharmacokinetics of dipeptidyl peptidase-4 inhibitors. (PMID: 22686547) Golightly L.K. … McDermott M.T. (Clin Pharmacokinet 2012) 25
  5. Transport of estrone 3-sulfate mediated by organic anion transporter OATP4C1: estrone 3-sulfate binds to the different recognition site for digoxin in OATP4C1. (PMID: 20610891) Yamaguchi H. … Mano N. (Drug Metab. Pharmacokinet. 2010) 3

Products for SLCO4C1 Gene

Sources for SLCO4C1 Gene

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