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Aliases for SLC9A9-AS1 Gene

Subcategory (RNA class) for SLC9A9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SLC9A9-AS1 Gene

  • SLC9A9 Antisense RNA 1 2 3 5
  • SLC9A9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC9A9-AS1 Gene

Previous GeneCards Identifiers for SLC9A9-AS1 Gene

  • GC00U933766
  • GC03P143062

Summaries for SLC9A9-AS1 Gene

GeneCards Summary for SLC9A9-AS1 Gene

SLC9A9-AS1 (SLC9A9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC9A9-AS1 Gene

Genomics for SLC9A9-AS1 Gene

Regulatory Elements for SLC9A9-AS1 Gene

Enhancers for SLC9A9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F143163 1.6 FANTOM5 Ensembl ENCODE 9.8 -174.1 -174126 9.8 HDGF PKNOX1 CREB3L1 SIN3A FEZF1 ZNF2 YY1 CBX5 FOS MCM3 PBX2P1 SLC9A9-AS1 LOC105374137
GH03F143281 1.2 ENCODE 10.9 -59.8 -59767 2.0 PKNOX1 MLX ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 ST13P15 SLC9A9-AS1 XRN1 ENSG00000240888 PBX2P1
GH03F143207 1.1 Ensembl ENCODE 9.8 -134.5 -134539 1.4 PKNOX1 WRNIP1 YY1 CHAMP1 CBX5 ETV6 CREM SMARCA5 CBFB JUNB SLC9A9-AS1 PBX2P1 ENSG00000240888
GH03F143158 1 Ensembl ENCODE 10.3 -183.6 -183632 1.2 PKNOX1 USF1 TBL1XR1 EBF1 RELA ZNF366 EED ETV6 CREM GFI1B SLC9A9-AS1 PBX2P1 LOC105374137
GH03F143301 0.9 Ensembl ENCODE 11.1 -39.4 -39418 2.1 TAF1 JUN BHLHE40 RAD21 NR2F2 ZNF341 NFE2 MYC MGA SLC9A9-AS1 ENSG00000240888 PBX2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC9A9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC9A9-AS1 Gene

143,342,246 bp from pter
143,347,071 bp from pter
4,826 bases
Plus strand

Genomic View for SLC9A9-AS1 Gene

Genes around SLC9A9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC9A9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC9A9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC9A9-AS1 Gene

Proteins for SLC9A9-AS1 Gene

Post-translational modifications for SLC9A9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC9A9-AS1 Gene

Domains & Families for SLC9A9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC9A9-AS1 Gene

Function for SLC9A9-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC9A9-AS1 Gene

Localization for SLC9A9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC9A9-AS1 Gene

Pathways & Interactions for SLC9A9-AS1 Gene

SuperPathways for SLC9A9-AS1 Gene

No Data Available

Interacting Proteins for SLC9A9-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC9A9-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SLC9A9-AS1 Gene

Transcripts for SLC9A9-AS1 Gene

mRNA/cDNA for SLC9A9-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC9A9-AS1 Gene

SLC9A9 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC9A9-AS1 Gene

No ASD Table

Relevant External Links for SLC9A9-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SLC9A9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC9A9-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC9A9-AS1 Gene:

genes like me logo Genes that share expression patterns with SLC9A9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC9A9-AS1 Gene

Orthologs for SLC9A9-AS1 Gene

Evolution for SLC9A9-AS1 Gene

Gene Tree for SLC9A9-AS1 (if available)
Gene Tree for SLC9A9-AS1 (if available)

No data available for Orthologs for SLC9A9-AS1 Gene

Paralogs for SLC9A9-AS1 Gene

No data available for Paralogs for SLC9A9-AS1 Gene

Variants for SLC9A9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC9A9-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10804691 -- 143,343,285(+) GAAAT(A/G)TTTTG intron-variant
rs10804692 -- 143,343,485(+) ATCAA(C/T)GGCAT intron-variant, nc-transcript-variant
rs111307587 -- 143,342,078(+) CAAAG(A/G)TGGAA intron-variant, upstream-variant-2KB
rs112114778 -- 143,343,141(+) ATAAT(G/T)GTTTT intron-variant
rs112352963 -- 143,347,531(+) AAGGT(C/T)CAGAG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SLC9A9-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759184 CNV loss 17122850

Relevant External Links for SLC9A9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC9A9-AS1 Gene

Disorders for SLC9A9-AS1 Gene

Relevant External Links for SLC9A9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SLC9A9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC9A9-AS1 Gene

Publications for SLC9A9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SLC9A9-AS1 Gene

Sources for SLC9A9-AS1 Gene

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