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Aliases for SLC9A9-AS1 Gene

Subcategory (RNA class) for SLC9A9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC9A9-AS1 Gene

  • SLC9A9 Antisense RNA 1 2 3 5
  • SLC9A9 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC9A9-AS1 Gene

Previous GeneCards Identifiers for SLC9A9-AS1 Gene

  • GC00U933766
  • GC03P143062

Summaries for SLC9A9-AS1 Gene

GeneCards Summary for SLC9A9-AS1 Gene

SLC9A9-AS1 (SLC9A9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC9A9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC9A9-AS1 Gene

Genomics for SLC9A9-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC9A9-AS1 Gene

Promoters and enhancers for SLC9A9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I143167 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -172.1 -172114 5.8 HDGF PKNOX1 SMAD1 NCOA2 TCF12 GATA2 ATF7 FOS RUNX3 NCOA1 PBX2P1 SLC9A9-AS1 LOC105374137
GH03I143301 Enhancer 0.9 Ensembl ENCODE 11.1 -39.4 -39417 2.1 ZNF189 JUN ZBTB11 MAX PYGO2 RAD21 GABPA NR2F2 ZNF592 ZKSCAN8 SLC9A9-AS1 ENSG00000240888 PBX2P1 SLC9A9
GH03I143673 Enhancer 1 Ensembl ENCODE 9.9 +332.2 332223 1.3 ELF3 CTCF RB1 EBF1 IRF4 RAD21 ZNF335 ZNF207 SMC3 ZNF143 SLC9A9-AS1 GC03M143614 GC03M143748 SLC9A9
GH03I143207 Enhancer 1 ENCODE dbSUPER 9.8 -134.5 -134524 1.4 HDGF PKNOX1 BATF CHAMP1 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 SMARCA5 SLC9A9-AS1 PBX2P1 ENSG00000240888
GH03I143158 Enhancer 0.9 Ensembl ENCODE 10.3 -183.6 -183553 1.1 MEIS2 PKNOX1 EBF1 BATF IRF4 RELA ZNF366 NFATC1 ATF7 ETV6 SLC9A9-AS1 PBX2P1 LOC105374137
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC9A9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC9A9-AS1 Gene

Genomic Locations for SLC9A9-AS1 Gene
chr3:143,342,246-143,347,071
(GRCh38/hg38)
Size:
4,826 bases
Orientation:
Plus strand
chr3:143,061,088-143,065,913
(GRCh37/hg19)

Genomic View for SLC9A9-AS1 Gene

Genes around SLC9A9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC9A9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC9A9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC9A9-AS1 Gene

Proteins for SLC9A9-AS1 Gene

Post-translational modifications for SLC9A9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC9A9-AS1 Gene

Domains & Families for SLC9A9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC9A9-AS1 Gene

Function for SLC9A9-AS1 Gene

Phenotypes From GWAS Catalog for SLC9A9-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC9A9-AS1 Gene

Localization for SLC9A9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC9A9-AS1 Gene

Pathways & Interactions for SLC9A9-AS1 Gene

SuperPathways for SLC9A9-AS1 Gene

No Data Available

Interacting Proteins for SLC9A9-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC9A9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC9A9-AS1 Gene

Drugs & Compounds for SLC9A9-AS1 Gene

No Compound Related Data Available

Transcripts for SLC9A9-AS1 Gene

mRNA/cDNA for SLC9A9-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC9A9-AS1 Gene

SLC9A9 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC9A9-AS1 Gene

No ASD Table

Relevant External Links for SLC9A9-AS1 Gene

GeneLoc Exon Structure for
SLC9A9-AS1
ECgene alternative splicing isoforms for
SLC9A9-AS1

Expression for SLC9A9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC9A9-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC9A9-AS1 Gene:

Hs.581618
genes like me logo Genes that share expression patterns with SLC9A9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC9A9-AS1 Gene

Orthologs for SLC9A9-AS1 Gene

Evolution for SLC9A9-AS1 Gene

ENSEMBL:
Gene Tree for SLC9A9-AS1 (if available)
TreeFam:
Gene Tree for SLC9A9-AS1 (if available)

No data available for Orthologs for SLC9A9-AS1 Gene

Paralogs for SLC9A9-AS1 Gene

No data available for Paralogs for SLC9A9-AS1 Gene

Variants for SLC9A9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC9A9-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000041216 -- 143,342,856(+) G/A intron_variant
rs1000519955 -- 143,342,647(+) A/T intron_variant
rs1000768259 -- 143,344,621(+) T/C intron_variant
rs1000877166 -- 143,345,933(+) T/C intron_variant
rs1001269359 -- 143,341,800(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC9A9-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759184 CNV loss 17122850

Additional Variant Information for SLC9A9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC9A9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC9A9-AS1 Gene

Disorders for SLC9A9-AS1 Gene

Additional Disease Information for SLC9A9-AS1

No disorders were found for SLC9A9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC9A9-AS1 Gene

Publications for SLC9A9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SLC9A9-AS1 Gene

Sources for SLC9A9-AS1 Gene

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