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Aliases for SLC9A7P1 Gene

Aliases for SLC9A7P1 Gene

  • Solute Carrier Family 9 Member 7 Pseudogene 1 2 3 5
  • Solute Carrier Family 9, Subfamily A (NHE7, Cation Proton Antiporter 7), Member 7 Pseudogene 1 2
  • Solute Carrier Family 9 (Sodium/Hydrogen Exchanger), Member 7 Pseudogene 1 2

External Ids for SLC9A7P1 Gene

Previous GeneCards Identifiers for SLC9A7P1 Gene

  • GC12M098847

Summaries for SLC9A7P1 Gene

GeneCards Summary for SLC9A7P1 Gene

SLC9A7P1 (Solute Carrier Family 9 Member 7 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC9A7P1 Gene

Genomics for SLC9A7P1 Gene

Regulatory Elements for SLC9A7P1 Gene

Enhancers for SLC9A7P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G098463 1.3 FANTOM5 Ensembl ENCODE 24.8 -7.1 -7125 2.3 CEBPB ZIC2 FOXA1 ZNF664 ZFHX2 JUND GATA2 POLR2A GLIS1 FOS SLC9A7P1 LINC02453 TMPO RNU4-41P GC12P098459 GC12M098464
GH12G098470 0.6 ENCODE 24.7 -13.8 -13818 1.3 CEBPA SCRT2 ZNF10 ZNF140 CEBPB KDM1A NR3C1 SLC9A7P1 LINC02453 RNU4-41P GC12M098470 GC12M098464
GH12G098490 1.8 VISTA Ensembl ENCODE dbSUPER 8.1 -34.4 -34424 4.2 HDGF MLX ARNT ZNF133 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 TMPO RNU4-41P SLC9A7P1 GC12P098497 GC12M098479
GH12G098502 1.4 ENCODE dbSUPER 10.3 -46.8 -46753 2.9 CREB3L1 ZFP64 DMAP1 YY1 SP3 TBX21 ZNF610 RCOR2 NBN NR2C1 TMPO SLC9A7P1 SLC25A3 TRW-CCA4-1 LINC02453
GH12G098438 1.6 FANTOM5 Ensembl ENCODE 8.2 +17.5 17545 2.4 PKNOX1 ATF1 ARNT E2F7 BRCA1 TCF12 ZNF121 ZNF766 ELK1 GATA2 SLC9A7P1 GC12M098419
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC9A7P1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC9A7P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000056119 -55 400 CTCF ATF1 RBBP5 ZFHX2 EGR1 PRDM10 ZBTB20 EGR2 ZNF263 ZNF362

Genomic Location for SLC9A7P1 Gene

Chromosome:
12
Start:
98,453,835 bp from pter
End:
98,457,145 bp from pter
Size:
3,311 bases
Orientation:
Minus strand

Genomic View for SLC9A7P1 Gene

Genes around SLC9A7P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC9A7P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC9A7P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC9A7P1 Gene

Proteins for SLC9A7P1 Gene

Post-translational modifications for SLC9A7P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC9A7P1 Gene

Domains & Families for SLC9A7P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC9A7P1 Gene

Function for SLC9A7P1 Gene

Phenotypes for SLC9A7P1 Gene

GenomeRNAi human phenotypes for SLC9A7P1:
genes like me logo Genes that share phenotypes with SLC9A7P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC9A7P1 Gene

Localization for SLC9A7P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC9A7P1 Gene

Pathways & Interactions for SLC9A7P1 Gene

SuperPathways for SLC9A7P1 Gene

No Data Available

Interacting Proteins for SLC9A7P1 Gene

Gene Ontology (GO) - Biological Process for SLC9A7P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC9A7P1 Gene

Transcripts for SLC9A7P1 Gene

mRNA/cDNA for SLC9A7P1 Gene

(3) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC9A7P1 Gene

Solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC9A7P1 Gene

No ASD Table

Relevant External Links for SLC9A7P1 Gene

GeneLoc Exon Structure for
SLC9A7P1
ECgene alternative splicing isoforms for
SLC9A7P1

Expression for SLC9A7P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC9A7P1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC9A7P1 Gene

This gene is overexpressed in Pancreas (x6.2) and Whole Blood (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of SLC9A7P1 Gene:

SLC9A7P1

SOURCE GeneReport for Unigene cluster for SLC9A7P1 Gene:

Hs.620643
genes like me logo Genes that share expression patterns with SLC9A7P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC9A7P1 Gene

Orthologs for SLC9A7P1 Gene

Evolution for SLC9A7P1 Gene

ENSEMBL:
Gene Tree for SLC9A7P1 (if available)
TreeFam:
Gene Tree for SLC9A7P1 (if available)

No data available for Orthologs for SLC9A7P1 Gene

Paralogs for SLC9A7P1 Gene

No data available for Paralogs for SLC9A7P1 Gene

Variants for SLC9A7P1 Gene

Sequence variations from dbSNP and Humsavar for SLC9A7P1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000553378 -- 98,457,228(+) CGGGA(A/C)TGGGC upstream-variant-2KB
rs1000895863 -- 98,458,034(+) CCATC(A/G)TTAAA upstream-variant-2KB
rs1000907202 -- 98,457,597(+) AAAAA(A/C)CCTAG upstream-variant-2KB
rs1002134387 -- 98,454,453(+) AGCCT(C/G)TTCTC nc-transcript-variant
rs1002425496 -- 98,456,070(+) CCAGT(C/T)TGGTA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC9A7P1 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER inversion 18451855

Relevant External Links for SLC9A7P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC9A7P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC9A7P1 Gene

Disorders for SLC9A7P1 Gene

Relevant External Links for SLC9A7P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC9A7P1

No disorders were found for SLC9A7P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC9A7P1 Gene

Publications for SLC9A7P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SLC9A7P1 Gene

Sources for SLC9A7P1 Gene

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