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Aliases for SLC9A5 Gene

Aliases for SLC9A5 Gene

  • Solute Carrier Family 9 Member A5 2 3
  • Solute Carrier Family 9, Subfamily A (NHE5, Cation Proton Antiporter 5), Member 5 2 3 5
  • Solute Carrier Family 9 (Sodium/Hydrogen Exchanger), Member 5 2 3
  • Solute Carrier Family 9 Member 5 3 4
  • Na(+)/H(+) Exchanger 5 3 4
  • NHE-5 3 4
  • NHE5 3 4
  • Solute Carrier Family 9 (Sodium/Hydrogen Exchanger), Isoform 5 2
  • Solute Carrier Family 9 (Sodium/Hydrogen Exchanger) 3

External Ids for SLC9A5 Gene

Previous GeneCards Identifiers for SLC9A5 Gene

  • GC16M076428
  • GC16P067660
  • GC16P067018
  • GC16P067059
  • GC16P065840
  • GC16P053155

Summaries for SLC9A5 Gene

GeneCards Summary for SLC9A5 Gene

SLC9A5 (Solute Carrier Family 9 Member A5) is a Protein Coding gene. Diseases associated with SLC9A5 include familial paroxysmal kinesigenic dyskinesia. Among its related pathways are G-protein activation and Sweet Taste Signaling. GO annotations related to this gene include solute:proton antiporter activity and sodium:proton antiporter activity. An important paralog of this gene is SLC9A4.

UniProtKB/Swiss-Prot for SLC9A5 Gene

  • Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction (By similarity).

Gene Wiki entry for SLC9A5 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC9A5 Gene

Genomics for SLC9A5 Gene

Regulatory Elements for SLC9A5 Gene

Enhancers for SLC9A5 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SLC9A5 on UCSC Golden Path with GeneCards custom track

Promoters for SLC9A5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLC9A5 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC9A5 Gene

Chromosome:
16
Start:
67,237,683 bp from pter
End:
67,272,191 bp from pter
Size:
34,509 bases
Orientation:
Plus strand

Genomic View for SLC9A5 Gene

Genes around SLC9A5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC9A5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC9A5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC9A5 Gene

Proteins for SLC9A5 Gene

  • Protein details for SLC9A5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14940-SL9A5_HUMAN
    Recommended name:
    Sodium/hydrogen exchanger 5
    Protein Accession:
    Q14940
    Secondary Accessions:
    • A5PKY7
    • Q9Y626

    Protein attributes for SLC9A5 Gene

    Size:
    896 amino acids
    Molecular mass:
    99011 Da
    Quaternary structure:
    • Interacts with CHP1 and CHP2 (By similarity). Interacts with ARRB2.

neXtProt entry for SLC9A5 Gene

Proteomics data for SLC9A5 Gene at MOPED

Post-translational modifications for SLC9A5 Gene

Antibody Products

No data available for DME Specific Peptides for SLC9A5 Gene

Domains & Families for SLC9A5 Gene

Gene Families for SLC9A5 Gene

Suggested Antigen Peptide Sequences for SLC9A5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q14940

UniProtKB/Swiss-Prot:

SL9A5_HUMAN :
  • Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
Family:
  • Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
genes like me logo Genes that share domains with SLC9A5: view

Function for SLC9A5 Gene

Molecular function for SLC9A5 Gene

GENATLAS Biochemistry:
solute carrier protein family 9 (sodium/hydrogen exchange),member 5,involved in intracellular pH regulation and cell volume,isoform 5,expressed in multiple regions of the brains including hippocampus
UniProtKB/Swiss-Prot Function:
Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction (By similarity).

Gene Ontology (GO) - Molecular Function for SLC9A5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015299 solute:proton antiporter activity IEA --
genes like me logo Genes that share ontologies with SLC9A5: view
genes like me logo Genes that share phenotypes with SLC9A5: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC9A5

CRISPR Products

miRNA for SLC9A5 Gene

miRTarBase miRNAs that target SLC9A5

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC9A5 Gene

Localization for SLC9A5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC9A5 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC9A5 Gene COMPARTMENTS Subcellular localization image for SLC9A5 gene
Compartment Confidence
plasma membrane 5
cytosol 3
endosome 2
nucleus 2

No data available for Gene Ontology (GO) - Cellular Components for SLC9A5 Gene

Pathways & Interactions for SLC9A5 Gene

genes like me logo Genes that share pathways with SLC9A5: view

Gene Ontology (GO) - Biological Process for SLC9A5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport TAS 9933641
GO:0006811 ion transport TAS --
GO:0006812 cation transport IEA --
GO:0006814 sodium ion transport IEA --
GO:0035725 sodium ion transmembrane transport TAS 9933641
genes like me logo Genes that share ontologies with SLC9A5: view

No data available for SIGNOR curated interactions for SLC9A5 Gene

Drugs & Compounds for SLC9A5 Gene

(1) Drugs for SLC9A5 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(2) Additional Compounds for SLC9A5 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5
genes like me logo Genes that share compounds with SLC9A5: view

Transcripts for SLC9A5 Gene

Unigene Clusters for SLC9A5 Gene

Solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC9A5 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b
SP1: - - - - - - - - - -
SP2: - - - - - - - - -
SP3:
SP4: - - - - - - - -
SP5:

Relevant External Links for SLC9A5 Gene

GeneLoc Exon Structure for
SLC9A5
ECgene alternative splicing isoforms for
SLC9A5

Expression for SLC9A5 Gene

mRNA expression in normal human tissues for SLC9A5 Gene

mRNA differential expression in normal tissues according to GTEx for SLC9A5 Gene

This gene is overexpressed in Spleen (x7.6), Brain - Cerebellum (x5.5), and Brain - Cerebellar Hemisphere (x4.6).

SOURCE GeneReport for Unigene cluster for SLC9A5 Gene Hs.439650

mRNA Expression by UniProt/SwissProt for SLC9A5 Gene

Q14940-SL9A5_HUMAN
Tissue specificity: Expressed in brain, testis, spleen, and skeletal muscle.
genes like me logo Genes that share expression patterns with SLC9A5: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for SLC9A5 Gene

Orthologs for SLC9A5 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC9A5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLC9A5 35
  • 92.67 (n)
  • 96.01 (a)
SLC9A5 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC9A5 35
  • 92.93 (n)
  • 95.55 (a)
SLC9A5 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc9a5 35
  • 90.31 (n)
  • 95.78 (a)
Slc9a5 16
Slc9a5 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC9A5 35
  • 98.01 (n)
  • 97.41 (a)
SLC9A5 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc9a5 35
  • 90.19 (n)
  • 95.67 (a)
oppossum
(Monodelphis domestica)
Mammalia SLC9A5 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC9A5 36
  • 89 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 36
  • 75 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
SLC9A5 35
  • 74.2 (n)
  • 76.92 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia slc9a5 35
  • 66.55 (n)
  • 71.14 (a)
zebrafish
(Danio rerio)
Actinopterygii slc9a5 35
  • 64.3 (n)
  • 64.01 (a)
slc9a5 36
  • 55 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009036 35
  • 53.64 (n)
  • 47.07 (a)
fruit fly
(Drosophila melanogaster)
Insecta Nhe2 35
  • 53.26 (n)
  • 45.47 (a)
worm
(Caenorhabditis elegans)
Secernentea nhx-2 37
  • 40 (a)
nhx-3 37
  • 44 (a)
nhx-6 37
  • 38 (a)
nhx-7 37
  • 35 (a)
nhx-9 37
  • 43 (a)
nhx-4 36
  • 24 (a)
ManyToMany
pbo-4 36
  • 28 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NHX1 36
  • 21 (a)
OneToMany
Species with no ortholog for SLC9A5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC9A5 Gene

ENSEMBL:
Gene Tree for SLC9A5 (if available)
TreeFam:
Gene Tree for SLC9A5 (if available)

Paralogs for SLC9A5 Gene

Paralogs for SLC9A5 Gene

(5) SIMAP similar genes for SLC9A5 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with SLC9A5: view

Variants for SLC9A5 Gene

Sequence variations from dbSNP and Humsavar for SLC9A5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs3909364 -- 67,249,937(-) GATGC(A/T)AGGAA intron-variant
rs8063476 -- 67,259,059(+) ttcga(A/G)accgg intron-variant
rs8064216 -- 67,259,252(+) acaga(C/G)caaga intron-variant
rs13330802 -- 67,256,853(+) CCATC(C/T)GGTCC intron-variant
rs4533277 -- 67,254,113(-) AGGaa(A/C/G/T)ttttt intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SLC9A5 Gene

Variant ID Type Subtype PubMed ID
dgv2885n71 CNV Loss 21882294
dgv2886n71 CNV Loss 21882294
dgv2888n71 CNV Loss 21882294
nsv524363 CNV Loss 19592680
nsv827707 CNV Loss 20364138
nsv906803 CNV Loss 21882294
nsv522852 CNV Gain 19592680
nsv524492 CNV Loss 19592680
nsv471092 CNV Gain 18288195
nsv457513 CNV Loss 19166990
esv2668436 CNV Deletion 23128226
esv9318 CNV Gain 19470904
nsv819753 CNV Gain 19587683

Variation tolerance for SLC9A5 Gene

Residual Variation Intolerance Score: 10.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.98; 36.62% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC9A5 Gene

HapMap Linkage Disequilibrium report
SLC9A5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC9A5 Gene

Disorders for SLC9A5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC9A5 Gene - From: GeneCards

Disorder Aliases PubMed IDs
familial paroxysmal kinesigenic dyskinesia
  • paroxysmal kinesigenic choreoathetosis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SLC9A5

Genetic Association Database (GAD)
SLC9A5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC9A5
genes like me logo Genes that share disorders with SLC9A5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC9A5 Gene

Publications for SLC9A5 Gene

  1. Molecular cloning and physical and genetic mapping of a novel human Na+/H+ exchanger (NHE5/SLC9A5) to chromosome 16q22.1. (PMID: 7759094) Klanke C.A. … Menon A.G. (Genomics 1995) 2 3 4 67
  2. Molecular cloning and functional expression of a rat Na+/H+ exchanger (NHE5) highly expressed in brain. (PMID: 9933642) Attaphitaya S. … Melvin J.E. (J. Biol. Chem. 1999) 2 3 23
  3. RACK1 associates with NHE5 in focal adhesions and positively regulates the transporter activity. (PMID: 16920332) Onishi I. … Numata M. (Cell. Signal. 2007) 3 23
  4. Molecular cloning, genomic organization, and functional expression of Na+/H+ exchanger isoform 5 (NHE5) from human brain. (PMID: 9933641) Baird N.R. … Shull G.E. (J. Biol. Chem. 1999) 3 23
  5. Macropinocytosis and TAK1 mediate anti-inflammatory to pro-inflammatory macrophage differentiation by HIV-1 Nef. (PMID: 24874739) Hashimoto M. … Suzu S. (Cell Death Dis 2014) 3

Products for SLC9A5 Gene

Sources for SLC9A5 Gene

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