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Aliases for SLC8A1-AS1 Gene

Subcategory (RNA class) for SLC8A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC8A1-AS1 Gene

  • SLC8A1 Antisense RNA 1 2 3 5
  • SLC8A1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC8A1-AS1 Gene

Previous GeneCards Identifiers for SLC8A1-AS1 Gene

  • GC02P040145
  • GC02P040013

Summaries for SLC8A1-AS1 Gene

GeneCards Summary for SLC8A1-AS1 Gene

SLC8A1-AS1 (SLC8A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC8A1-AS1 Gene

Genomics for SLC8A1-AS1 Gene

Genomic Location for SLC8A1-AS1 Gene

Chromosome:
2
Start:
39,786,453 bp from pter
End:
40,255,209 bp from pter
Size:
468,757 bases
Orientation:
Plus strand

Genomic View for SLC8A1-AS1 Gene

Genes around SLC8A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC8A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC8A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC8A1-AS1 Gene

No data available for Regulatory Elements for SLC8A1-AS1 Gene

Proteins for SLC8A1-AS1 Gene

Post-translational modifications for SLC8A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC8A1-AS1 Gene

Domains & Families for SLC8A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC8A1-AS1 Gene

Function for SLC8A1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC8A1-AS1 Gene

Localization for SLC8A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC8A1-AS1 Gene

Pathways & Interactions for SLC8A1-AS1 Gene

SuperPathways for SLC8A1-AS1 Gene

No Data Available

Interacting Proteins for SLC8A1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC8A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC8A1-AS1 Gene

Drugs & Compounds for SLC8A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC8A1-AS1 Gene

mRNA/cDNA for SLC8A1-AS1 Gene

(41) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC8A1-AS1 Gene

No ASD Table

Relevant External Links for SLC8A1-AS1 Gene

GeneLoc Exon Structure for
SLC8A1-AS1
ECgene alternative splicing isoforms for
SLC8A1-AS1

Expression for SLC8A1-AS1 Gene

mRNA expression in normal human tissues for SLC8A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC8A1-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x11.8) and Heart - Atrial Appendage (x7.0).
genes like me logo Genes that share expression patterns with SLC8A1-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SLC8A1-AS1 Gene

Orthologs for SLC8A1-AS1 Gene

Evolution for SLC8A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC8A1-AS1 (if available)
TreeFam:
Gene Tree for SLC8A1-AS1 (if available)

No data available for Orthologs for SLC8A1-AS1 Gene

Paralogs for SLC8A1-AS1 Gene

No data available for Paralogs for SLC8A1-AS1 Gene

Variants for SLC8A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC8A1-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs720796 -- 39,955,252(-) TATAT(G/T)GAGAG intron-variant
rs759353 -- 39,969,966(-) AGAAG(C/G)TTTGG intron-variant
rs759354 -- 39,999,773(-) GTAAC(A/C)AGGGG intron-variant
rs759355 -- 39,990,116(-) TCCTT(C/T)AACCC intron-variant
rs759356 -- 39,990,112(-) TCAAC(C/T)CCTAC intron-variant

Relevant External Links for SLC8A1-AS1 Gene

HapMap Linkage Disequilibrium report
SLC8A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC8A1-AS1 Gene

Disorders for SLC8A1-AS1 Gene

Relevant External Links for SLC8A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC8A1-AS1

No disorders were found for SLC8A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC8A1-AS1 Gene

Publications for SLC8A1-AS1 Gene

  1. Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. (PMID: 24952745) Arking D.E. … Newton-Cheh C. (Nat. Genet. 2014) 3 67
  2. ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology. (PMID: 24770881) Nelson P.T. … Fardo D.W. (Acta Neuropathol. 2014) 3
  3. Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults. (PMID: 22628157) Levine A.J. … Freimer N. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2012) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SLC8A1-AS1 Gene

Sources for SLC8A1-AS1 Gene

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