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Aliases for SLC8A1-AS1 Gene

Subcategory (RNA class) for SLC8A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC8A1-AS1 Gene

  • SLC8A1 Antisense RNA 1 2 3 5
  • SLC8A1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC8A1-AS1 Gene

Previous GeneCards Identifiers for SLC8A1-AS1 Gene

  • GC02P040145
  • GC02P040013

Summaries for SLC8A1-AS1 Gene

GeneCards Summary for SLC8A1-AS1 Gene

SLC8A1-AS1 (SLC8A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC8A1-AS1 Gene

Genomics for SLC8A1-AS1 Gene

Regulatory Elements for SLC8A1-AS1 Gene

Enhancers for SLC8A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G040028 0.8 ENCODE dbSUPER 7.7 +242.8 242794 1.1 CTCF RAD21 ATF2 SPI1 SLC8A1-AS1 THUMPD2 GC02M040068 GC02P039975
GH02G039734 1.1 Ensembl ENCODE dbSUPER 4.5 -49.8 -49810 3.6 CTCF BHLHE40 ATF2 JUND ZFHX2 POLR2A FOS EGR2 THUMPD2 SLC8A1-AS1 TMEM178A
GH02G039942 0.4 ENCODE 10.1 +156.4 156441 1.3 JUND EP300 SLC8A1-AS1 GC02M039926 GC02P039975
GH02G039870 0.5 ENCODE 4.5 +85.0 84953 1.6 RAD51 JUND BHLHE40 USF2 SLC8A1-AS1 PIR38775 GC02P039910
GH02G040043 0.4 ENCODE 4.3 +256.9 256943 0.2 MYC SLC8A1-AS1 GC02M040068 GC02P039975
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC8A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC8A1-AS1 Gene

Chromosome:
2
Start:
39,786,453 bp from pter
End:
40,255,209 bp from pter
Size:
468,757 bases
Orientation:
Plus strand

Genomic View for SLC8A1-AS1 Gene

Genes around SLC8A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC8A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC8A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC8A1-AS1 Gene

Proteins for SLC8A1-AS1 Gene

Post-translational modifications for SLC8A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC8A1-AS1 Gene

Domains & Families for SLC8A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC8A1-AS1 Gene

Function for SLC8A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC8A1-AS1 Gene

Localization for SLC8A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC8A1-AS1 Gene

Pathways & Interactions for SLC8A1-AS1 Gene

SuperPathways for SLC8A1-AS1 Gene

No Data Available

Interacting Proteins for SLC8A1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC8A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC8A1-AS1 Gene

Drugs & Compounds for SLC8A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC8A1-AS1 Gene

mRNA/cDNA for SLC8A1-AS1 Gene

(41) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC8A1-AS1 Gene

No ASD Table

Relevant External Links for SLC8A1-AS1 Gene

GeneLoc Exon Structure for
SLC8A1-AS1
ECgene alternative splicing isoforms for
SLC8A1-AS1

Expression for SLC8A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC8A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC8A1-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x11.8) and Heart - Atrial Appendage (x7.0).
genes like me logo Genes that share expression patterns with SLC8A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC8A1-AS1 Gene

Orthologs for SLC8A1-AS1 Gene

Evolution for SLC8A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC8A1-AS1 (if available)
TreeFam:
Gene Tree for SLC8A1-AS1 (if available)

No data available for Orthologs for SLC8A1-AS1 Gene

Paralogs for SLC8A1-AS1 Gene

No data available for Paralogs for SLC8A1-AS1 Gene

Variants for SLC8A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC8A1-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000002747 -- 40,246,013(+) ATTAT(A/G)CCATA intron-variant
rs1000003101 -- 40,161,829(+) TTTCC(A/G)CTAAT intron-variant
rs1000008432 -- 39,941,098(+) TACGG(C/G)TCTCC intron-variant
rs1000029052 -- 40,107,287(+) AAAAA(A/G)AAAAA intron-variant
rs1000048489 -- 40,031,548(+) AGCCA(C/T)TCTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC8A1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv215n21 CNV loss 19592680
dgv3791n100 CNV gain 25217958
dgv3792n100 CNV loss 25217958
dgv449n27 CNV loss 19166990
dgv6793n54 CNV loss 21841781
dgv6794n54 CNV gain 21841781
dgv6795n54 CNV loss 21841781
esv1125657 CNV deletion 17803354
esv1427276 CNV deletion 17803354
esv2234750 CNV deletion 18987734
esv2656735 CNV deletion 23128226
esv2675167 CNV deletion 23128226
esv2719954 CNV deletion 23290073
esv2719955 CNV deletion 23290073
esv2719956 CNV deletion 23290073
esv2719957 CNV deletion 23290073
esv2719958 CNV deletion 23290073
esv2719959 CNV deletion 23290073
esv2719960 CNV deletion 23290073
esv2719961 CNV deletion 23290073
esv2719963 CNV deletion 23290073
esv275350 CNV gain+loss 21479260
esv2763455 CNV loss 21179565
esv3012077 CNV deletion 24192839
esv34071 CNV loss 18971310
esv3555356 CNV deletion 23714750
esv3555367 CNV deletion 23714750
esv3575235 CNV gain 25503493
esv3575236 CNV gain 25503493
esv3583748 CNV loss 25503493
esv3590441 CNV loss 21293372
esv3590444 CNV loss 21293372
esv3590445 CNV loss 21293372
esv3590446 CNV gain 21293372
esv3590447 CNV loss 21293372
esv3590448 CNV loss 21293372
esv3590452 CNV loss 21293372
esv3590453 CNV loss 21293372
esv3891871 CNV loss 25118596
esv3891882 CNV gain 25118596
esv4917 CNV loss 18987735
esv991008 CNV deletion 20482838
esv995388 CNV deletion 20482838
nsv1001866 CNV loss 25217958
nsv1003896 CNV loss 25217958
nsv1005758 CNV loss 25217958
nsv1006550 CNV gain 25217958
nsv1008190 CNV loss 25217958
nsv1072935 CNV deletion 25765185
nsv1123317 CNV deletion 24896259
nsv1134860 CNV deletion 24896259
nsv1141790 CNV insertion 24896259
nsv2697 CNV insertion 18451855
nsv519483 CNV loss 19592680
nsv524586 CNV loss 19592680
nsv581501 CNV loss 21841781
nsv581502 CNV gain 21841781
nsv833892 CNV loss 17160897
nsv955091 CNV deletion 24416366
nsv998885 CNV loss 25217958

Relevant External Links for SLC8A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC8A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC8A1-AS1 Gene

Disorders for SLC8A1-AS1 Gene

Relevant External Links for SLC8A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC8A1-AS1

No disorders were found for SLC8A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC8A1-AS1 Gene

Publications for SLC8A1-AS1 Gene

  1. ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology. (PMID: 24770881) Nelson P.T. … Fardo D.W. (Acta Neuropathol. 2014) 3 64
  2. Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. (PMID: 24952745) Arking D.E. … Newton-Cheh C. (Nat. Genet. 2014) 3 64
  3. Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults. (PMID: 22628157) Levine A.J. … Freimer N. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2012) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SLC8A1-AS1 Gene

Sources for SLC8A1-AS1 Gene

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