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Aliases for SLC7A5P2 Gene

Aliases for SLC7A5P2 Gene

  • Solute Carrier Family 7 Member 5 Pseudogene 2 2 3 5
  • Solute Carrier Family 7 (Amino Acid Transporter Light Chain, L System), Member 5 Pseudogene 2 2 3
  • IMAA 3 4
  • MMAA 3 4
  • Solute Carrier Family 7 (Cationic Amino Acid Transporter, Y+ System), Member 5 Pseudogene 2 3
  • HLAT1 3-Transmembrane Protein IMAA 4
  • HLAT1 3-Transmembrane Protein MMAA 4
  • LAT1-3TM Protein 2 3
  • SLC7A5 Pseudogene 3
  • HLAT1 3TM IMAA 4
  • HLAT1 3TM MMAA 4
  • HLAT1-3TM 3

External Ids for SLC7A5P2 Gene

Previous GeneCards Identifiers for SLC7A5P2 Gene

  • GC16M021529

Summaries for SLC7A5P2 Gene

GeneCards Summary for SLC7A5P2 Gene

SLC7A5P2 (Solute Carrier Family 7 Member 5 Pseudogene 2) is a Pseudogene. GO annotations related to this gene include amino acid transmembrane transporter activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC7A5P2 Gene

Genomics for SLC7A5P2 Gene

Regulatory Elements for SLC7A5P2 Gene

Enhancers for SLC7A5P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F021515 1.2 Ensembl ENCODE 0.8 +4.7 4749 0.6 PKNOX1 MLX ARID4B FEZF1 ZNF121 GLIS2 KLF7 MIER2 TSHZ1 PPARG LOC646828 LOC342293 LOC81691 SLC7A5P2 PIR36552 SMG1P3
GH16F021517 1.1 ENCODE 0.8 +0.2 216 4.7 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 THUMPD1 LOC646828 LOC342293 LOC81691 RRN3P1 METTL9 SMG1P1 SMG1P4 NPIPB5 SLC7A5P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC7A5P2 on UCSC Golden Path with GeneCards custom track

Promoters for SLC7A5P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001504233 844 2401 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for SLC7A5P2 Gene

Chromosome:
16
Start:
21,517,893 bp from pter
End:
21,520,444 bp from pter
Size:
2,552 bases
Orientation:
Minus strand

Genomic View for SLC7A5P2 Gene

Genes around SLC7A5P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC7A5P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC7A5P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC7A5P2 Gene

Proteins for SLC7A5P2 Gene

  • Protein details for SLC7A5P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9GIP4-LAT1L_HUMAN
    Recommended name:
    Putative L-type amino acid transporter 1-like protein IMAA
    Protein Accession:
    Q9GIP4
    Secondary Accessions:
    • Q6IPZ0
    • Q8MH62

    Protein attributes for SLC7A5P2 Gene

    Size:
    190 amino acids
    Molecular mass:
    19840 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SLC7A5P2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC7A5P2 Gene

Post-translational modifications for SLC7A5P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC7A5P2 Gene

Domains & Families for SLC7A5P2 Gene

Protein Domains for SLC7A5P2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC7A5P2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9GIP4

UniProtKB/Swiss-Prot:

LAT1L_HUMAN :
  • Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC 2.A.3.8) family.
Family:
  • Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC 2.A.3.8) family.
genes like me logo Genes that share domains with SLC7A5P2: view

No data available for Gene Families for SLC7A5P2 Gene

Function for SLC7A5P2 Gene

Molecular function for SLC7A5P2 Gene

UniProtKB/Swiss-Prot Induction:
Up-regulated by concanavalin-A stimulation.

Gene Ontology (GO) - Molecular Function for SLC7A5P2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015171 amino acid transmembrane transporter activity IEA --
genes like me logo Genes that share ontologies with SLC7A5P2: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC7A5P2 Gene

Localization for SLC7A5P2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC7A5P2 Gene

Membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SLC7A5P2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC7A5P2: view

No data available for Subcellular locations from COMPARTMENTS for SLC7A5P2 Gene

Pathways & Interactions for SLC7A5P2 Gene

SuperPathways for SLC7A5P2 Gene

No Data Available

Interacting Proteins for SLC7A5P2 Gene

Gene Ontology (GO) - Biological Process for SLC7A5P2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003333 amino acid transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC7A5P2: view

No data available for Pathways by source and SIGNOR curated interactions for SLC7A5P2 Gene

Transcripts for SLC7A5P2 Gene

mRNA/cDNA for SLC7A5P2 Gene

(2) Additional mRNA sequences :
(29) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC7A5P2 Gene

Solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC7A5P2 Gene

No ASD Table

Relevant External Links for SLC7A5P2 Gene

GeneLoc Exon Structure for
SLC7A5P2
ECgene alternative splicing isoforms for
SLC7A5P2

Expression for SLC7A5P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC7A5P2 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SLC7A5P2 Gene



NURSA nuclear receptor signaling pathways regulating expression of SLC7A5P2 Gene:

SLC7A5P2

SOURCE GeneReport for Unigene cluster for SLC7A5P2 Gene:

Hs.664952

mRNA Expression by UniProt/SwissProt for SLC7A5P2 Gene:

Q9GIP4-LAT1L_HUMAN
Tissue specificity: Expressed in peripheral blood mononuclear cells and lymphoid and myeloid cell lines.
genes like me logo Genes that share expression patterns with SLC7A5P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Protein tissue co-expression partners for SLC7A5P2 Gene

Orthologs for SLC7A5P2 Gene

Evolution for SLC7A5P2 Gene

ENSEMBL:
Gene Tree for SLC7A5P2 (if available)
TreeFam:
Gene Tree for SLC7A5P2 (if available)

No data available for Orthologs for SLC7A5P2 Gene

Paralogs for SLC7A5P2 Gene

(9) SIMAP similar genes for SLC7A5P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLC7A5P2: view

No data available for Paralogs for SLC7A5P2 Gene

Variants for SLC7A5P2 Gene

Sequence variations from dbSNP and Humsavar for SLC7A5P2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs111623579 -- 21,518,109(+) CCTGA(A/C)CTCGG nc-transcript-variant
rs112328383 -- 21,521,687(+) GTGGA(-/G)GGGGG upstream-variant-2KB
rs112933582 -- 21,518,751(+) AAGTC(A/G)TTTTC nc-transcript-variant
rs113932506 -- 21,519,521(+) TCAGC(C/G)GGGCC nc-transcript-variant
rs11639923 -- 21,518,456(+) AGAGC(A/C)CTGCT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC7A5P2 Gene

Variant ID Type Subtype PubMed ID
nsv977934 CNV duplication 23825009
nsv9397 CNV gain+loss 18304495
nsv827589 CNV loss 20364138
nsv827584 CNV gain 20364138
nsv509606 CNV insertion 20534489
nsv442716 CNV gain 18776908
nsv433438 CNV gain 18776910
nsv433437 CNV gain 18776910
nsv428322 CNV gain 18775914
nsv1160372 CNV duplication 26073780
nsv1152437 CNV duplication 26484159
nsv1076422 CNV duplication 25765185
esv3892810 CNV loss 25118596
esv3638168 CNV loss 21293372
esv3584705 CNV loss 24956385
esv34235 CNV gain 17911159
esv33799 CNV loss 17666407
esv2763135 CNV gain 21179565
esv2762010 CNV gain+loss 21179565
esv2758636 CNV gain+loss 17122850
esv2651779 CNV gain 19546169
esv25717 CNV gain+loss 19812545
esv2421840 CNV deletion 20811451
dgv4944n54 CNV loss 21841781
dgv489e214 CNV gain 21293372
dgv466n67 CNV gain 20364138
dgv2801n100 CNV loss 25217958
dgv2800n100 CNV gain 25217958
dgv1316n106 CNV duplication 24896259

Relevant External Links for SLC7A5P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC7A5P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC7A5P2 Gene

Disorders for SLC7A5P2 Gene

Relevant External Links for SLC7A5P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC7A5P2

No disorders were found for SLC7A5P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC7A5P2 Gene

Publications for SLC7A5P2 Gene

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M. … Tsurudome M. (Int. J. Biochem. Cell Biol. 2002) 2 3 4 64
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SLC7A5P2 Gene

Sources for SLC7A5P2 Gene

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