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Aliases for SLC7A5P1 Gene

Aliases for SLC7A5P1 Gene

  • Solute Carrier Family 7 Member 5 Pseudogene 1 2 3
  • Solute Carrier Family 7 (Amino Acid Transporter Light Chain, L System), Member 5 Pseudogene 1 2 3 5
  • HLAT1 3-Transmembrane Protein MLAS 3 4
  • MLAS 3 4
  • Solute Carrier Family 7 (Cationic Amino Acid Transporter, Y+ System), Member 5 Pseudogene 1 3
  • Putative L-Type Amino Acid Transporter 1-Like Protein MLAS 3
  • SLC7A5 Pseudogene 3
  • HLAT1 3TM MLAS 4
  • HLAT1-3TM 3
  • LAT1-3TM 3
  • DC49 3

External Ids for SLC7A5P1 Gene

Previous GeneCards Identifiers for SLC7A5P1 Gene

  • GC16M029533
  • GC16M029534

Summaries for SLC7A5P1 Gene

Entrez Gene Summary for SLC7A5P1 Gene

  • This locus represents a pseudogene of the L-type amino acid transporter 1. Transcripts initiating at this locus read through to downstream SMG1 pseudogene 2 (SMG1P2). [provided by RefSeq, Feb 2016]

GeneCards Summary for SLC7A5P1 Gene

SLC7A5P1 (Solute Carrier Family 7 Member 5 Pseudogene 1) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC7A5P1 Gene

Genomics for SLC7A5P1 Gene

Regulatory Elements for SLC7A5P1 Gene

Promoters for SLC7A5P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLC7A5P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC7A5P1 Gene

Chromosome:
16
Start:
29,613,103 bp from pter
End:
29,613,717 bp from pter
Size:
615 bases
Orientation:
Minus strand

Genomic View for SLC7A5P1 Gene

Genes around SLC7A5P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC7A5P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC7A5P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC7A5P1 Gene

Proteins for SLC7A5P1 Gene

  • Protein details for SLC7A5P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8MH63-LAT1N_HUMAN
    Recommended name:
    Putative L-type amino acid transporter 1-like protein MLAS
    Protein Accession:
    Q8MH63

    Protein attributes for SLC7A5P1 Gene

    Size:
    180 amino acids
    Molecular mass:
    18779 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLC7A5P1 Gene

Proteomics data for SLC7A5P1 Gene at MOPED

Post-translational modifications for SLC7A5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC7A5P1 Gene

Domains & Families for SLC7A5P1 Gene

Protein Domains for SLC7A5P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC7A5P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8MH63

UniProtKB/Swiss-Prot:

LAT1N_HUMAN :
  • Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC 2.A.3.8) family.
Family:
  • Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC 2.A.3.8) family.
genes like me logo Genes that share domains with SLC7A5P1: view

No data available for Gene Families for SLC7A5P1 Gene

Function for SLC7A5P1 Gene

genes like me logo Genes that share phenotypes with SLC7A5P1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC7A5P1 Gene

Localization for SLC7A5P1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC7A5P1 Gene

Membrane; Multi-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC7A5P1 Gene

Pathways & Interactions for SLC7A5P1 Gene

SuperPathways for SLC7A5P1 Gene

No Data Available

Interacting Proteins for SLC7A5P1 Gene

Gene Ontology (GO) - Biological Process for SLC7A5P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC7A5P1 Gene

Drugs & Compounds for SLC7A5P1 Gene

No Compound Related Data Available

Transcripts for SLC7A5P1 Gene

mRNA/cDNA for SLC7A5P1 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(126) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC7A5P1 Gene

Solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC7A5P1 Gene

No ASD Table

Relevant External Links for SLC7A5P1 Gene

GeneLoc Exon Structure for
SLC7A5P1
ECgene alternative splicing isoforms for
SLC7A5P1

Expression for SLC7A5P1 Gene

mRNA expression in normal human tissues for SLC7A5P1 Gene

SOURCE GeneReport for Unigene cluster for SLC7A5P1 Gene Hs.677169

mRNA Expression by UniProt/SwissProt for SLC7A5P1 Gene

Q8MH63-LAT1N_HUMAN
Tissue specificity: Expressed in peripheral blood mononuclear cells and lymphoid and myeloid cell lines.
genes like me logo Genes that share expression patterns with SLC7A5P1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for SLC7A5P1 Gene

Orthologs for SLC7A5P1 Gene

Evolution for SLC7A5P1 Gene

ENSEMBL:
Gene Tree for SLC7A5P1 (if available)
TreeFam:
Gene Tree for SLC7A5P1 (if available)

No data available for Orthologs for SLC7A5P1 Gene

Paralogs for SLC7A5P1 Gene

(10) SIMAP similar genes for SLC7A5P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLC7A5P1: view

No data available for Paralogs for SLC7A5P1 Gene

Variants for SLC7A5P1 Gene

Sequence variations from dbSNP and Humsavar for SLC7A5P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs2550510 -- 29,612,926(-) CATTC(G/T)TTTAC downstream-variant-500B
rs2911333 -- 29,615,379(-) CCCTA(C/T)AATCT upstream-variant-2KB
rs2549943 -- 29,614,747(+) GTATC(A/C)CCCCC upstream-variant-2KB
rs3743701 -- 29,613,610(+) CGCTA(A/C/G)CGCCC nc-transcript-variant
rs3915781 -- 29,615,588(+) tgtaa(C/T)gccag upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SLC7A5P1 Gene

Variant ID Type Subtype PubMed ID
dgv845e1 CNV Complex 17122850
nsv905711 CNV Gain 21882294
esv29892 CNV Gain 19812545
esv32773 CNV Loss 17666407
nsv9430 CNV Gain 18304495

Relevant External Links for SLC7A5P1 Gene

HapMap Linkage Disequilibrium report
SLC7A5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC7A5P1 Gene

Disorders for SLC7A5P1 Gene

Relevant External Links for SLC7A5P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC7A5P1

No disorders were found for SLC7A5P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC7A5P1 Gene

Publications for SLC7A5P1 Gene

  1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PMID: 12009310) Ito M. … Tsurudome M. (Int. J. Biochem. Cell Biol. 2002) 2 3 4 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus B.J. … Adams M.D. (Genomics 1999) 3

Products for SLC7A5P1 Gene

Sources for SLC7A5P1 Gene

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