SLC7A5P1 Gene
pseudogene GIFtS: 27
GCID: GC16M029627
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solute carrier family 7 (amino acid transporter light chain,...
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Aliases
for SLC7A5P1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
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| Solute Carrier Family 7 (Amino Acid Transporter Light Chain, L System),Member 5 Pseudogene 11 2 | | HLAT1-3TM1 | | MLAS1 2 3 | | LAT1-3TM Protein 12 | | LAT1-3TM1 2 | | HLAT1 3-Transmembrane Protein MLAS3 | | DC492 | | HLAT1 3TM MLAS3 |
Export aliases for SLC7A5P1 gene to outside databasesPrevious GC identifers: GC16M029533 GC16M029534 |
Summaries
for SLC7A5P1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for SLC7A5P1:
This locus represents a transcribed pseudogene of the L-type amino acid transporter 1. (provided by RefSeq, Jul 2008)
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Genomic Views
for SLC7A5P1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010393.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the SLC7A5P1 gene promoter:
HOXA9B HOXA9 Pax-5 Olf-1 Ik-3 Arnt MZF-1 Pax-3 STAT3 Pax-4a
Other transcription factors
Search SABiosciences Chromatin IP Primers for SLC7A5P1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC7A5P1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p11.2 Ensembl cytogenetic band: 16p12.2 HGNC cytogenetic band: 16p11.2SLC7A5P1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M029627: view genomic region
(about GC identifiers)
Start:
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29,624,424 bp from pter |
End:
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29,625,038 bp from pter |
Size:
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615 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr16- 21,458,004-21,531,765 |
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Proteins
for SLC7A5P1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/Swiss-Prot: LAT1N_HUMAN, Q8MH63 (See
protein sequence)Recommended Name: Putative L-type amino acid transporter 1-like protein MLAS Size: 180 amino acids; 18779 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Caution: Could be the product of a pseudogeneExplore the universe of human proteins at neXtProt for SLC7A5P1: NX_Q8MH63
SLC7A5P1 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products for SLC7A5P1:
SLC7A5P1 Antibody Products:
Assay Products for SLC7A5P1: |
Protein
Domains /
Families
for SLC7A5P1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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SLC7A5P1 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q8MH63ProtoNet protein and cluster: Q8MH63 UniProtKB/Swiss-Prot: LAT1N_HUMAN, Q8MH63Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. L-type amino acid transporter (LAT) (TC2.A.3.8) family |
Function
for SLC7A5P1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Animal Models:
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Pathways & Interactions
for SLC7A5P1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC7A5P1
|
Drugs & Compounds
for SLC7A5P1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for SLC7A5P1
Search CenterWatch for drugs/clinical trials and news about SLC7A5P1 
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Transcripts
for SLC7A5P1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for SLC7A5P1 gene: NM_031211.3 Unigene Cluster for SLC7A5P1: Solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 Hs.677169 [show with all ESTs]Unigene Representative Sequence: BM9230588 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000520823(uc002diu.1) ENST00000522480 ENST00000440195(uc002diz.1)
ENST00000522841(uc002dja.3) ENST00000437413 ENST00000435197 ENST00000445756
ENST00000330588(uc002djc.3)
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SLC7A5P1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat SLC7A5P1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC7A5P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC7A5P1 |
Additional cDNA sequence: NR_002593.1 2 DOTS entries: DT.100048577 DT.91719329 24/126 AceView cDNA sequences (see all 126): AA583959 AW027872 BC063703 AI932767 BE856281 N58537 CB117190 BM980315 AI890540 AI278611 BQ774620 BI522879 BU630462 AA911116 AI203503 BM995243 Z41844 AA993675 BQ576164 CD723471 BX403259 AI291616 W56258 BV207199
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for SLC7A5P1 About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 |
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| SP1: | | | | | | | | | | | | | - | | | | | | | | |
| SP2: | | | | | | | | | | | - | | | | | | | | | |
ECgene alternative splicing isoforms for SLC7A5P1
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Expression
for SLC7A5P1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
Genevestigator expression for SLC7A5P1
SOURCE GeneReport for Unigene cluster: Hs.677169
UniProtKB/Swiss-Prot: LAT1N_HUMAN, Q8MH63Tissue specificity: Expressed in peripheral blood mononuclear cells and lymphoid and myeloid cell lines
SABiosciences Custom PCR Arrays for SLC7A5P1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SLC7A5P1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat SLC7A5P1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC7A5P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC7A5P1 |
Orthologs
for SLC7A5P1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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--
ENSEMBL Gene Tree for SLC7A5P1 (if available)
TreeFam Gene Tree for SLC7A5P1 (if available) |
Paralogs
for SLC7A5P1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for SLC7A5P1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for SLC7A5P1 (29624424 - 29625038 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 7 variations for SLC7A5P1
7 CNVs: 72519 35383 72520 30777 7102 4000 77272 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for SLC7A5P1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for SLC7A5P1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for SLC7A5P1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SLC7A5P1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. (PubMed id 12009310)1, 2, 3 Ito M.... Tsurudome M. (2002)
- Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197)1 Brandenberger R.... Stanton L.W. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PubMed id 10493829)1 Loftus B.J.... Adams M.D. (1999)
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External Searches for SLC7A5P1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing SLC7A5P1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
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Other Databases showing SLC7A5P1 gene
(According to HUGE)
About This Section
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Specialized Databases showing SLC7A5P1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for SLC7A5P1 gene:
Search GeneIP for patents involving SLC7A5P1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SLC7A5P1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SLC7A5P1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SLC7A5P1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC7A5P1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC7A5P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC7A5P1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC7A5P1 |
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