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Aliases for SLC7A11-AS1 Gene

Subcategory (RNA class) for SLC7A11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC7A11-AS1 Gene

  • SLC7A11 Antisense RNA 1 2 3 5
  • SLC7A11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC7A11-AS1 Gene

Previous GeneCards Identifiers for SLC7A11-AS1 Gene

  • GC04P138980

Summaries for SLC7A11-AS1 Gene

GeneCards Summary for SLC7A11-AS1 Gene

SLC7A11-AS1 (SLC7A11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC7A11-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC7A11-AS1 Gene

Genomics for SLC7A11-AS1 Gene

Regulatory Elements for SLC7A11-AS1 Gene

Enhancers for SLC7A11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H138103 0.7 ENCODE 11.2 +46.6 46566 1 SOX13 GATAD2A FOXA2 TEAD1 FOXA3 HLF PPARG YY1 NFIL3 HNF1A SLC7A11-AS1 LINC00616 GC04M138063
GH04H138158 0.7 ENCODE 4.9 +101.6 101614 0 PKNOX1 JUN MAFG FOSL1 JUND ZNF316 NFE2 KDM1A FOS EMSY SLC7A11-AS1 LINC00616 ENSG00000249091
GH04H138052 1 Ensembl ENCODE 0.7 -2.9 -2872 5 PKNOX1 JUN FOSL1 HIC1 CTBP1 POLR2A EGR1 FOSL2 FOS RCOR1 SLC7A11-AS1 LOC105377447
GH04H138034 1.1 Ensembl ENCODE 0.3 -21.9 -21868 2 CTCF JUN CEBPG RAD21 FOSL1 CC2D1A ZNF316 ZBTB48 ADNP SMC3 SLC7A11-AS1 LOC105377447
GH04H138037 0.5 ENCODE 0.4 -18.8 -18805 2 HCFC1 ZNF143 FOS MAFK THAP11 SLC7A11-AS1 LOC105377447
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC7A11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC7A11-AS1 Gene

Chromosome:
4
Start:
138,057,464 bp from pter
End:
138,178,177 bp from pter
Size:
120,714 bases
Orientation:
Plus strand

Genomic View for SLC7A11-AS1 Gene

Genes around SLC7A11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC7A11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC7A11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC7A11-AS1 Gene

Proteins for SLC7A11-AS1 Gene

Post-translational modifications for SLC7A11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC7A11-AS1 Gene

Domains & Families for SLC7A11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC7A11-AS1 Gene

Function for SLC7A11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC7A11-AS1 Gene

Localization for SLC7A11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC7A11-AS1 Gene

Pathways & Interactions for SLC7A11-AS1 Gene

SuperPathways for SLC7A11-AS1 Gene

No Data Available

Interacting Proteins for SLC7A11-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC7A11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC7A11-AS1 Gene

Drugs & Compounds for SLC7A11-AS1 Gene

No Compound Related Data Available

Transcripts for SLC7A11-AS1 Gene

mRNA/cDNA for SLC7A11-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC7A11-AS1 Gene

SLC7A11 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC7A11-AS1 Gene

No ASD Table

Relevant External Links for SLC7A11-AS1 Gene

GeneLoc Exon Structure for
SLC7A11-AS1
ECgene alternative splicing isoforms for
SLC7A11-AS1

Expression for SLC7A11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC7A11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC7A11-AS1 Gene

This gene is overexpressed in Testis (x12.4).

SOURCE GeneReport for Unigene cluster for SLC7A11-AS1 Gene:

Hs.570846
genes like me logo Genes that share expression patterns with SLC7A11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC7A11-AS1 Gene

Orthologs for SLC7A11-AS1 Gene

Evolution for SLC7A11-AS1 Gene

ENSEMBL:
Gene Tree for SLC7A11-AS1 (if available)
TreeFam:
Gene Tree for SLC7A11-AS1 (if available)

No data available for Orthologs for SLC7A11-AS1 Gene

Paralogs for SLC7A11-AS1 Gene

No data available for Paralogs for SLC7A11-AS1 Gene

Variants for SLC7A11-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC7A11-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000002068 -- 138,168,985(+) TGTTT(A/T)AGCTT intron-variant, utr-variant-3-prime
rs1000081695 -- 138,096,325(+) TTTTT(C/T)TTTTT intron-variant
rs1000214053 -- 138,147,452(+) AATGT(C/T)TTCCT intron-variant
rs1000223341 -- 138,091,016(+) TTTCC(A/C)AGGCT intron-variant, nc-transcript-variant
rs1000227533 -- 138,167,971(+) ATCAC(A/G)TCATA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SLC7A11-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2658045 CNV deletion 23128226
esv2663226 CNV deletion 23128226
esv2728411 CNV deletion 23290073
esv2728412 CNV deletion 23290073
esv2728413 CNV deletion 23290073
esv3303908 CNV mobile element insertion 20981092
esv3371114 CNV insertion 20981092
esv3602410 CNV loss 21293372
esv3602412 CNV loss 21293372
esv3602413 CNV loss 21293372
nsv1114574 CNV deletion 24896259
nsv290617 CNV deletion 16902084
nsv293626 CNV deletion 16902084
nsv822746 CNV loss 20364138
nsv830080 CNV gain 17160897

Relevant External Links for SLC7A11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC7A11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC7A11-AS1 Gene

Disorders for SLC7A11-AS1 Gene

Relevant External Links for SLC7A11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC7A11-AS1

No disorders were found for SLC7A11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC7A11-AS1 Gene

Publications for SLC7A11-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SLC7A11-AS1 Gene

Sources for SLC7A11-AS1 Gene

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