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Aliases for SLC7A11-AS1 Gene

Subcategory (RNA class) for SLC7A11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC7A11-AS1 Gene

  • SLC7A11 Antisense RNA 1 2 3 5
  • SLC7A11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC7A11-AS1 Gene

Previous GeneCards Identifiers for SLC7A11-AS1 Gene

  • GC04P138980

Summaries for SLC7A11-AS1 Gene

GeneCards Summary for SLC7A11-AS1 Gene

SLC7A11-AS1 (SLC7A11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC7A11-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC7A11-AS1 Gene

Genomics for SLC7A11-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC7A11-AS1 Gene

Promoters and enhancers for SLC7A11-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I138103 Enhancer 0.7 ENCODE 11.2 +46.6 46565 1.7 SOX13 FOXA2 YY1 POLR2A CREM EZH2 GATAD2A TEAD1 RXRA HLF SLC7A11-AS1 LINC00616 GC04M138063
GH04I138158 Enhancer 0.6 ENCODE 4.9 +101.6 101613 0.6 PKNOX1 JUN MAFG FOSL1 JUND ZNF316 NFE2 KDM1A FOS EMSY SLC7A11-AS1 LINC00616 ENSG00000249091
GH04I138052 Enhancer 0.9 Ensembl ENCODE 0.8 -2.9 -2872 5.2 MEIS2 PKNOX1 JUN HIC1 FOSL1 ZNF335 CTBP1 POLR2A EGR1 RCOR1 SLC7A11-AS1 LINC00616 LOC105377447
GH04I138034 Enhancer 1 Ensembl ENCODE 0.3 -21.9 -21868 2.1 IRF4 RAD21 ETV6 FOS RUNX3 ZNF654 CEBPB REST ELF1 MAFF SLC7A11-AS1 LOC105377447 LINC00616
GH04I138090 Enhancer 0.8 Ensembl ENCODE 0.3 +33.1 33063 0.6 ELF3 GATAD2A CTCF ZNF654 ZNF792 TEAD1 TRIM22 REST RAD21 ZNF335 GC04M138063 SLC7A11-AS1 LINC00616
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC7A11-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC7A11-AS1 Gene

Genomic Locations for SLC7A11-AS1 Gene
chr4:138,057,464-138,178,177
(GRCh38/hg38)
Size:
120,714 bases
Orientation:
Plus strand
chr4:138,978,618-139,099,331
(GRCh37/hg19)

Genomic View for SLC7A11-AS1 Gene

Genes around SLC7A11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC7A11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC7A11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC7A11-AS1 Gene

Proteins for SLC7A11-AS1 Gene

Post-translational modifications for SLC7A11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC7A11-AS1 Gene

Domains & Families for SLC7A11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC7A11-AS1 Gene

Function for SLC7A11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC7A11-AS1 Gene

Localization for SLC7A11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC7A11-AS1 Gene

Pathways & Interactions for SLC7A11-AS1 Gene

SuperPathways for SLC7A11-AS1 Gene

No Data Available

Interacting Proteins for SLC7A11-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC7A11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC7A11-AS1 Gene

Drugs & Compounds for SLC7A11-AS1 Gene

No Compound Related Data Available

Transcripts for SLC7A11-AS1 Gene

mRNA/cDNA for SLC7A11-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC7A11-AS1 Gene

SLC7A11 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC7A11-AS1 Gene

No ASD Table

Relevant External Links for SLC7A11-AS1 Gene

GeneLoc Exon Structure for
SLC7A11-AS1
ECgene alternative splicing isoforms for
SLC7A11-AS1

Expression for SLC7A11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC7A11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC7A11-AS1 Gene

This gene is overexpressed in Testis (x12.4).

SOURCE GeneReport for Unigene cluster for SLC7A11-AS1 Gene:

Hs.570846
genes like me logo Genes that share expression patterns with SLC7A11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC7A11-AS1 Gene

Orthologs for SLC7A11-AS1 Gene

Evolution for SLC7A11-AS1 Gene

ENSEMBL:
Gene Tree for SLC7A11-AS1 (if available)
TreeFam:
Gene Tree for SLC7A11-AS1 (if available)

No data available for Orthologs for SLC7A11-AS1 Gene

Paralogs for SLC7A11-AS1 Gene

No data available for Paralogs for SLC7A11-AS1 Gene

Variants for SLC7A11-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC7A11-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000002068 -- 138,168,985(+) T/A intron_variant
rs1000081695 -- 138,096,325(+) T/C intron_variant
rs1000214053 -- 138,147,452(+) T/C intron_variant
rs1000223341 -- 138,091,016(+) C/A intron_variant
rs1000227533 -- 138,167,971(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC7A11-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2658045 CNV deletion 23128226
esv2663226 CNV deletion 23128226
esv2728411 CNV deletion 23290073
esv2728412 CNV deletion 23290073
esv2728413 CNV deletion 23290073
esv3303908 CNV mobile element insertion 20981092
esv3371114 CNV insertion 20981092
esv3602410 CNV loss 21293372
esv3602412 CNV loss 21293372
esv3602413 CNV loss 21293372
nsv1114574 CNV deletion 24896259
nsv290617 CNV deletion 16902084
nsv293626 CNV deletion 16902084
nsv822746 CNV loss 20364138
nsv830080 CNV gain 17160897

Additional Variant Information for SLC7A11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC7A11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC7A11-AS1 Gene

Disorders for SLC7A11-AS1 Gene

Additional Disease Information for SLC7A11-AS1

No disorders were found for SLC7A11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC7A11-AS1 Gene

Publications for SLC7A11-AS1 Gene

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. (PMID: 27816668) Long W … Ding H (Clinica chimica acta; international journal of clinical chemistry 2016) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Decreased expression of the long non-coding RNA SLC7A11-AS1 predicts poor prognosis and promotes tumor growth in gastric cancer. (PMID: 29348845) Luo Y … Xiao J (Oncotarget 2017) 3

Products for SLC7A11-AS1 Gene

Sources for SLC7A11-AS1 Gene

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