SLC6A13 Gene
protein-coding GIFtS : 56
GCID: GC12 M000329
solute carrier family 6 (neurotransmitter transporter, GABA),...
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Aliasesfor SLC6A13 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Solute Carrier Family 6 (Neurotransmitter Transporter, GABA), Member 13 1 2 GAT21 2 3 GAT-22 3 GABA Transport Protein2 Sodium- And Chloride-Dependent GABA Transporter 22 Solute Carrier Family 6 Member 133
Export aliases for SLC6A13 gene to outside databases Previous GC identifers: GC12M000184 GC12M000200
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Summariesfor SLC6A13 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: S6A13_HUMAN, Q9NSD5 Function : Terminates the action of GABA by its high affinity sodium-dependent reuptake into presynaptic terminals summary
for SLC6A13 : GABA transporters are sodium- and chloride-dependent members of the solute carrier family 6 (SLC6) thatmediate the rapid removal of GABA and maintain low extracellular levels. Four 12-TM domain transporters(GAT-1, GAT-2, GAT-3 and BGT-1) have been identified and localized to neurons and glia. While GAT-1, GAT-2,GAT-3 and BGT-1 bind GABA with varying affinities, they share structural motifs including 12-TM domains,extracellular glycosylation sites and intracellular consensus sites for phosphorylation. A vesiculartransporter (VGAT) has also been identified. This member of the SCL32 family is both structurally andfunctionally distinct, containing 10-TM domains and being found in GABAergic and glycinergic neurons. Someanticonvulsants have been reported to act upon the GABA transporters. There is evidence to suggest that GABAtransporters are linked to epilepsy, affective disorders and schizophrenia.
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Viewsfor SLC6A13 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_009759.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SLC6A13 gene promoter: STAT1 C/EBPbeta p53 POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) POU3F2 GATA-6 STAT3 NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for SLC6A13 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC6A13
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12p13.3 Ensembl cytogenetic band: 12p13.33 HGNC cytogenetic band: 12p13.33 SLC6A13 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12M000329: view genomic region
(about GC identifiers )
Start:
329,789 bp from pter
End:
372,039 bp from pter
Size:
42,251 bases
Orientation:
minus strand
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Proteinsfor SLC6A13 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: S6A13_HUMAN, Q9NSD5 (See
protein sequence )Recommended Name: Sodium- and chloride-dependent GABA transporter 2 Size : 602 amino acids; 68009 Da
Subcellular location : Membrane; Multi-pass membrane protein
Sequence caution : Sequence=AAF64247.1; Type=Frameshift; Positions=542;
Secondary accessions : B4DJL1 Q8TCC2 Q8WW56Alternative splicing : 3 isoforms : Q9NSD5-1 Q9NSD5-2 Q9NSD5-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for SLC6A13: NX_Q9NSD5 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NSD5 SLC6A13 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_001177926.1 NP_001230321.1 NP_057699.2 ENSEMBL proteins: ENSP00000339260 ENSP00000444606 ENSP00000437386 ENSP00000443466 ENSP00000389316 ENSP00000407104 Reactome Protein details: Q9NSD5 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
SLC6A13 for ontologies About GeneDecksing SLC6A13 Antibody Products: Assay Products for SLC6A13:
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Protein
Domains / Familiesfor SLC6A13 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SLC6A13 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NSD5 ProtoNet protein and cluster: Q9NSD5
UniProtKB/Swiss-Prot: S6A13_HUMAN, Q9NSD5 Similarity : Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. SLC6A13 subfamily
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Functionfor SLC6A13 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: S6A13_HUMAN, Q9NSD5 Function : Terminates the action of GABA by its high affinity sodium-dependent reuptake into presynaptic terminalsBiophysicochemical properties : Kinetic parameters: KM=3.7 uM for GABA; KM=20.2 uM for beta-alanine;
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SLC6A13 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SLC6A13OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): SLC6A13 (NM_016615 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SLC6A13 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SLC6A13
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC6A13
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005328 neurotransmitter:sodium symporter activity
IEA -- GO:0005332 gamma-aminobutyric acid:sodium symporter activity
IEA -- GO:0042165 neurotransmitter binding
IEA --
SLC6A13 for ontologies About GeneDecksing Animal Models: Mouse knock-out Slc6a13 tm1.2Ncd for SLC6A13 2 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Slc6a13) :
SLC6A13 for phenotypes About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Pathways & Interactionsfor SLC6A13 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/7 super-pathways (see all 7 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 SLC-mediated transmembrane transport 2 GABA synthesis, release, reuptake and degradation 3 Transmission across Chemical Synapses 4 Amine compound SLC transporters 5 Reuptake of GABA
Pathway sources See GeneCards unified pathways Show all pathways 1 EMD Millipore Pathway for SLC6A13 5/10
Reactome Pathways for SLC6A13 (see all 10 )1 PharmGKB Pathway for SLC6A13
SLC6A13 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC6A13 1 Interacting protein for SLC6A13 (Q9NSD5 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
SLC6A13 for ontologies About GeneDecksing
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Drugs & Compoundsfor SLC6A13 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
SLC6A13 for compounds About GeneDecksing Compounds for SLC6A13 available from Tocris Bioscience About this table 1 HMDB Compound for SLC6A13 About this table 1 Novoseek chemical compound relationship for SLC6A13 gene About this table
Search CenterWatch for drugs/clinical trials and news about SLC6A13 / S6A13
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Transcriptsfor SLC6A13 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SLC6A13 gene (3 alternative transcripts): NM_001190997.2 NM_001243392.1 NM_016615.4 Unigene Clusters for SLC6A13:
Solute carrier family 6 (neurotransmitter transporter, GABA), member 13 Hs.504398 [show with all ESTs ] , Hs.733878 [show with all ESTs ] Unigene Representative Sequences: NM_016615 , DQ786244 12 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000343164 (uc009zdj.2 uc001qic.2 uc010sdm.1 ) ENST00000539668 ENST00000542379 ENST00000543722 ENST00000542947 ENST00000546319 ENST00000536842 ENST00000534887 ENST00000539260 ENST00000542272 ENST00000436453 (uc001qid.2 )ENST00000445055 (uc010sdl.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SLC6A13 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SLC6A13OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): SLC6A13 (NM_016615 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SLC6A13 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SLC6A13
Additional cDNA sequence: DQ786244.1
7 DOTS entries : DT.97839052 DT.40126672
DT.102825094 DT.100744217 DT.406188 DT.121149537 DT.99977092 24/416 AceView cDNA sequences (see all 416 ):
AA460157 R94969 BM662288 BX474753 BE301184 AU134388 BM686577 AK057703 AI797502 BM310524 AA906265 AA128422 BC053893 AW006851 CA437681 CB158627 AI634822 U25911 N70444 BX106636 BC022392 AW444590 AI146438 AW268369 GeneLoc Exon Structure 5/11 Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A13 (see all 11 ) About this scheme ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · SP1 :       -       -       -   -                   -   -             SP2 :       -       -       -   -                   -   -   -           SP3 :   -   -   -                                               SP4 :   -   -   -       -                                         SP5 :       -   -   -   -   -   -   -   -                                
ExUns: 13b · 13c ^ 14 ^ 15 ^ 16 ^ 17a · 17b SP1 :               SP2 :               SP3 :               SP4 :               SP5 :              
ECgene alternative splicing isoforms for SLC6A13
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Expression for SLC6A13 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SLC6A13 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GAAAAGAAGG
About this image SLC6A13 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See SLC6A13 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SLC6A13 SOURCE GeneReport for Unigene clusters: Hs.504398 Hs.733878 UniProtKB/Swiss-Prot: S6A13_HUMAN, Q9NSD5 Tissue specificity : Expressed in brain, kidney, lung, liver and testis SABiosciences Expression via Pathway-Focused PCR Array including SLC6A13 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SLC6A13Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SLC6A13 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SLC6A13 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SLC6A13 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC6A13
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Orthologsfor SLC6A13 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SLC6A13 gene from 5/18 species (see all 18 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
LOC1008582301
sodium- and chloride-dependent GABA transporter 2-like
80.09(n) 85.69(a)
 
100858230 XM_003640400.1 XP_003640448.1
lizard (Anolis carolinensis)
Reptilia
SLC6A136
--
83(a)
1 ↔ 1
5(11826437-11866069)
African clawed frog (Xenopus laevis)
Amphibia
MGC686542
hypothetical protein MGC68654
79.5(n)
 
BC060418.1
zebrafish (Danio rerio)
Actinopterygii
LOC1003325921
sodium- and chloride-dependent GABA transporter 2-like
73.77(n) 78.69(a)
 
100332592 XM_002667362.2 XP_002667408.2
worm (Caenorhabditis elegans)
Secernentea
snf-113
Na(+)/Cl(-)-dependent GABA transporter
48(a) (best of 9)
 
V(11307950-11311658) --
ENSEMBL Gene Tree for SLC6A13 (if available)TreeFam Gene Tree for SLC6A13 (if available)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Paralogsfor SLC6A13 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SLC6A13 gene SLC6A6 2 SLC6A11 2 SLC6A12 2 SLC6A14 2 SLC6A5 2 SLC6A8 2 SLC6A1 2 SLC6A3 2 SLC6A4 2 SLC6A7 2 SLC6A2 2 SLC6A9 2 18/20 SIMAP similar genes for SLC6A13 using alignment to 4 protein entries: S6A13_HUMAN (see all proteins )
(see all similar genes ):SLC6A12 SLC6A11 DAT1 SLC6A1 SLC6A6 SLC6A9 5HTT SLC6A2 SLC6A3 SLC6A8 SLC6A7 SLC6A4 SLC6A5 SLC6A14 SLC6A15 SLC6A19 SLC6A18 SLC6A20
SLC6A13 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for SLC6A13 PGOHUM00000262332
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genomic Variantsfor SLC6A13 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SLC6A13 (329789 - 372039 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 4 variations for SLC6A13 3 CNVs : 2965 35068 9201 1 Indel : 45025 Human Gene Mutation Database (HGMD) : SLC6A13 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SLC6A13
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Disorders
/ Diseasesfor SLC6A13 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SLC6A13 for disorders About GeneDecksing
OMIM gene information: 615097
OMIM disorders : --1 disease for SLC6A13 : About MalaCards kidney disease 1 disease from the University of Copenhagen DISEASES database for SLC6A13 :Focal epilepsy Human Genome Epidemiology (HuGE) Navigator: SLC6A13 (12 documents) Export disorders for SLC6A13 gene to outside databases
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Publicationsfor SLC6A13 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SLC6A13 gene, integrated from 9 sources (see all 32 ): (articles sorted by number of sources associating them with SLC6A13) Utopia : connect your pdf to the dynamic world of online information
Cloning and characterization of a functional human gamma-aminobutyric acid (GABA) transporter, human GAT-2. (PubMed id 17502375) 1 , 2 , 9 Christiansen B.... Braeuner-Osborne H. (2007) Sequence and chromosomal assignment of a human novel cDNA: similarity to gamma-aminobutyric acid transporter. (PubMed id 11824941) 1 , 2 , 9 Gong Y.... Minuk G.Y. (2001) High selectivity of the g-aminobutyric acid transporte r 2 (GAT-2, SLC6A13) revealed by structure-based approach. (PubMed id 22932902) 1 Schlessinger A....Sali A. (2012) L-type voltage-dependent calcium channel alpha subuni t 1C is a novel candidate gene associated with secondary hyperparathyroidism: a n application of haplotype-based analysis for multiple linked single nucleotide polymorphisms. (PubMed id 20424473) 1 Yokoyama K....Hosoya T. (2010) Comprehensive copy number variant (CNV) analysis of n euronal pathways genes in psychiatric disorders identifies rare variants within patients. (PubMed id 20398908) 1 Saus E....Estivill X. (2010) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) New loci associated with kidney function and chronic kidney disease. (PubMed id 20383146) 1 KAPttgen A....Fox C.S. (2010) Variation at the NFATC2 locus increases the risk of t hiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipr il and rosiglitazone Medication (DREAM) study. (PubMed id 20628086) 1 Bailey S.D....Anand S. (2010) Genetical genomic determinants of alcohol consumption in rats and humans. (PubMed id 19874574) 1 Tabakoff B....Hoffman P.L. (2009) Gene-centric association signals for lipids and apoli poproteins identified via the HumanCVD BeadChip. (PubMed id 19913121) 1 Talmud P.J.... . (2009)
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
External Searches for SLC6A13 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Genome Databases showing SLC6A13 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Other Databases showing SLC6A13 gene
(According to HUGE )
About This Section --
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Specialized Databases showing SLC6A13 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SLC6A13 Pharmacogenomics, SNPs, Pathways
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
About This Section Patent Information for SLC6A13 gene: Search GeneIP for patents involving SLC6A13 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
Jump to Section...
Aliases
Databases
Disorders / Diseases
Domains / Families
Drugs / Compounds
Expression
Function
Genomic Views
Intellectual Property
Orthologs
Paralogs
Pathways / Interactions
Products
Proteins
Publications
Search Box
Summaries
Transcripts
Variants
TOP
BOTTOM
Productsfor SLC6A13 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SLC6A13 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SLC6A13 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SLC6A13 OriGene Protein Over-expression Lysate for SLC6A13 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SLC6A13 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SLC6A13 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SLC6A13 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SLC6A13 OriGene Custom Protein Services for SLC6A13 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SLC6A13 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SLC6A13 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC6A13 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SLC6A13 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SLC6A13 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SLC6A13
SLC6A13 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC6A13
Search ThermoFisher Antibodies for SLC6A13
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SLC6A13
Jump to Section...
Aliases for SLC6A13
Databases for SLC6A13
Disorders / Diseases for SLC6A13
Domains / Families for SLC6A13
Drugs / Compounds for SLC6A13
Expression for SLC6A13
Function for SLC6A13
Genomic Views for SLC6A13
Intellectual Property for SLC6A13
Orthologs for SLC6A13
Paralogs for SLC6A13
Pathways / Interactions for SLC6A13
Products for SLC6A13
Proteins for SLC6A13
Publications for SLC6A13
Search Box for SLC6A13
Summaries for SLC6A13
Transcripts for SLC6A13
Variants for SLC6A13
TOP
BOTTOM