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Aliases for SLC6A10P Gene

Aliases for SLC6A10P Gene

  • Solute Carrier Family 6 Member 10, Pseudogene 2 3 5
  • Solute Carrier Family 6 (Neurotransmitter Transporter), Member 10, Pseudogene 2 3
  • Creatine Transporter-2 2 3
  • Solute Carrier Family 6 (Neurotransmitter Transporter, Creatine), Member 10, Pseudogene 3
  • Solute Carrier Family 6 (Neurotransmitter Transporter, Creatine), Member 10 2
  • Similar To Sodium- And Chloride-Dependent Creatine Transporter 3
  • SLC6A10pA 3
  • SLC6A10 3
  • CT-2 3
  • CT2 3

External Ids for SLC6A10P Gene

Previous HGNC Symbols for SLC6A10P Gene

  • SLC6A10

Previous GeneCards Identifiers for SLC6A10P Gene

  • GC16M032798

Summaries for SLC6A10P Gene

GeneCards Summary for SLC6A10P Gene

SLC6A10P (Solute Carrier Family 6 Member 10, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC6A10P Gene

Genomics for SLC6A10P Gene

Regulatory Elements for SLC6A10P Gene


Genomic Location for SLC6A10P Gene

Chromosome:
16
Start:
32,877,469 bp from pter
End:
32,885,501 bp from pter
Size:
8,033 bases
Orientation:
Minus strand

Genomic View for SLC6A10P Gene

Genes around SLC6A10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC6A10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC6A10P Gene

Proteins for SLC6A10P Gene

Post-translational modifications for SLC6A10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A10P Gene

Domains & Families for SLC6A10P Gene

Gene Families for SLC6A10P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SLC6A10P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC6A10P Gene

Function for SLC6A10P Gene

Phenotypes for SLC6A10P Gene

genes like me logo Genes that share phenotypes with SLC6A10P: view

Animal Model Products

miRNA for SLC6A10P Gene

miRTarBase miRNAs that target SLC6A10P

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC6A10P Gene

Localization for SLC6A10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC6A10P Gene

Pathways & Interactions for SLC6A10P Gene

SuperPathways for SLC6A10P Gene

No Data Available

Interacting Proteins for SLC6A10P Gene

Gene Ontology (GO) - Biological Process for SLC6A10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC6A10P Gene

Drugs & Compounds for SLC6A10P Gene

No Compound Related Data Available

Transcripts for SLC6A10P Gene

mRNA/cDNA for SLC6A10P Gene

Unigene Clusters for SLC6A10P Gene

Solute carrier family 6 (neurotransmitter transporter, creatine), member 10, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A10P Gene

No ASD Table

Relevant External Links for SLC6A10P Gene

GeneLoc Exon Structure for
SLC6A10P
ECgene alternative splicing isoforms for
SLC6A10P

Expression for SLC6A10P Gene

mRNA expression in normal human tissues for SLC6A10P Gene

mRNA differential expression in normal tissues according to GTEx for SLC6A10P Gene

This gene is overexpressed in Testis (x41.7).

NURSA nuclear receptor signaling pathways regulating expression of SLC6A10P Gene:

SLC6A10P

SOURCE GeneReport for Unigene cluster for SLC6A10P Gene:

Hs.433146
genes like me logo Genes that share expression patterns with SLC6A10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC6A10P Gene

Orthologs for SLC6A10P Gene

Evolution for SLC6A10P Gene

ENSEMBL:
Gene Tree for SLC6A10P (if available)
TreeFam:
Gene Tree for SLC6A10P (if available)

No data available for Orthologs for SLC6A10P Gene

Paralogs for SLC6A10P Gene

No data available for Paralogs for SLC6A10P Gene

Variants for SLC6A10P Gene

Sequence variations from dbSNP and Humsavar for SLC6A10P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs3878528 -- 32,878,760(+) AAAAG(C/T)GTCAG intron-variant
rs364131 -- 32,880,943(+) CAGGG(C/T)GCCAG nc-transcript-variant
rs375866 -- 32,884,067(-) CGCAC(A/G)TGCCC intron-variant
rs382157 -- 32,886,158(-) CATCA(C/T)CCCGG upstream-variant-2KB
rs384388 -- 32,883,909(-) CTTCA(A/G)TGGCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC6A10P Gene

Variant ID Type Subtype PubMed ID
dgv117n111 CNV deletion 26073780
dgv118n111 CNV deletion 26073780
dgv1548e59 CNV duplication 20981092
dgv2837n100 CNV loss 25217958
dgv2838n100 CNV gain 25217958
dgv2839n100 CNV gain 25217958
dgv2840n100 CNV gain 25217958
dgv2841n100 CNV loss 25217958
dgv2842n100 CNV loss 25217958
dgv2844n100 CNV gain+loss 25217958
dgv2847n100 CNV gain+loss 25217958
dgv2854n100 CNV gain 25217958
dgv2858n100 CNV gain+loss 25217958
dgv2862n100 CNV loss 25217958
dgv2869n100 CNV gain 25217958
dgv2870n100 CNV gain+loss 25217958
dgv2871n100 CNV gain 25217958
dgv2872n100 CNV gain+loss 25217958
dgv2873n100 CNV gain 25217958
dgv2874n100 CNV loss 25217958
dgv2876n100 CNV loss 25217958
dgv2877n100 CNV loss 25217958
dgv2882n100 CNV gain 25217958
dgv2891n100 CNV loss 25217958
dgv2895n100 CNV loss 25217958
dgv2896n100 CNV loss 25217958
dgv2897n100 CNV gain+loss 25217958
dgv2898n100 CNV gain 25217958
dgv2899n100 CNV loss 25217958
dgv2900n100 CNV gain 25217958
dgv336e201 CNV deletion 23290073
dgv491e199 CNV deletion 23128226
dgv50e203 CNV gain+loss 21179565
dgv814e212 CNV gain 25503493
dgv816e212 CNV loss 25503493
dgv817e212 CNV loss 25503493
dgv820e212 CNV gain 25503493
dgv821e212 CNV gain 25503493
dgv822e212 CNV gain 25503493
dgv823e212 CNV loss 25503493
esv23410 CNV gain 19812545
esv2714201 CNV deletion 23290073
esv29952 CNV gain 18421352
esv33069 CNV loss 17666407
esv3332020 CNV duplication 20981092
esv3570542 CNV gain 25503493
esv3570853 CNV gain 25503493
esv3582179 CNV loss 25503493
esv3582181 CNV loss 25503493
esv3584927 CNV gain 24956385
esv3892840 CNV gain 25118596
nsv1055691 CNV loss 25217958
nsv1057297 CNV gain 25217958
nsv1057749 CNV gain 25217958
nsv1062513 CNV gain+loss 25217958
nsv1064239 CNV loss 25217958
nsv1070762 CNV deletion 25765185
nsv1141287 CNV duplication 24896259
nsv1153460 CNV duplication 26484159
nsv1160394 OTHER complex 26073780
nsv1160395 CNV duplication 26073780
nsv1160398 CNV duplication 26073780
nsv1160399 OTHER complex 26073780
nsv428325 CNV gain+loss 18775914
nsv433444 CNV gain 18776910
nsv436841 CNV insertion 17901297
nsv469746 CNV gain 16826518
nsv471500 CNV gain 19718026
nsv520222 CNV loss 19592680
nsv527583 CNV gain 19592680
nsv571835 CNV loss 21841781
nsv572201 CNV gain 21841781
nsv572202 CNV gain 21841781
nsv821684 CNV gain 15273396
nsv827624 CNV gain 20364138
nsv9439 CNV gain+loss 18304495
nsv977970 CNV duplication 23825009

Relevant External Links for SLC6A10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC6A10P Gene

Disorders for SLC6A10P Gene

Relevant External Links for SLC6A10P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC6A10P

No disorders were found for SLC6A10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC6A10P Gene

Publications for SLC6A10P Gene

  1. Assignment of the human creatine transporter type 2 (SLC6A10) to chromosome band 16p11.2 by in situ hybridization. (PMID: 9154116) Xu W. … Emson P.C. (Cytogenet. Cell Genet. 1997) 2 3 65
  2. Expression profile of COL2A1 and the pseudogene SLC6A10P predicts tumor recurrence in high-grade serous ovarian cancer. (PMID: 26311224) Ganapathi M.K. … Ganapathi R.N. (Int. J. Cancer 2016) 3 65
  3. Cloning and characterization of the promoter regions from the parent and paralogous creatine transporter genes. (PMID: 24144841) Ndika J.D. … Salomons G.S. (Gene 2014) 3 65
  4. Euchromatic variant 16p+. Implications in prenatal diagnosis. (PMID: 16634122) LA^pez Pajares I. … Delicado A. (Prenat. Diagn. 2006) 22 65
  5. The repertoire of solute carriers of family 6: identification of new human and rodent genes. (PMID: 16125675) Hoglund P.J. … Fredriksson R. (Biochem. Biophys. Res. Commun. 2005) 3 65

Products for SLC6A10P Gene

Sources for SLC6A10P Gene

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