Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SLC6A1-AS1 Gene

Subcategory (RNA class) for SLC6A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC6A1-AS1 Gene

  • SLC6A1 Antisense RNA 1 2 3 5
  • SLC6A1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC6A1-AS1 Gene

Previous GeneCards Identifiers for SLC6A1-AS1 Gene

  • GC00U933233

Summaries for SLC6A1-AS1 Gene

GeneCards Summary for SLC6A1-AS1 Gene

SLC6A1-AS1 (SLC6A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC6A1-AS1 Gene

Genomics for SLC6A1-AS1 Gene

Regulatory Elements for SLC6A1-AS1 Gene

Enhancers for SLC6A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F011182 1.2 Ensembl ENCODE 10.4 -165.7 -165710 5.2 ATF1 PKNOX1 SIN3A BRCA1 ZNF766 ELK1 ZNF143 FOS SMARCB1 PBX2 SLC6A1-AS1 SLC6A1 LOC102723663 LOC105376951
GH03F011194 1.1 Ensembl ENCODE 10.3 -177.5 -177502 3.6 PKNOX1 SIN3A FEZF1 RAD21 ZNF366 FOS ZNF263 ZNF654 JUNB CEBPB SLC6A1-AS1 SLC6A1 ATG7 LOC102723663 LOC105376951
GH03F011198 1.1 Ensembl ENCODE 10.3 -181.8 -181750 4.0 ZFP64 ZBTB40 ZNF335 SCRT2 ZNF143 SMARCC2 THAP11 SMARCC1 MCM3 ZNF280D TATDN2 SLC6A1-AS1 SLC6A1 VGLL4 TAMM41 ATG7 LOC102723663 LOC105376951
GH03F011139 1 Ensembl ENCODE 10.8 -121.2 -121224 1.7 GTF2F1 KLF1 KLF17 ZMYM3 MAX MNT EBF1 E2F1 ZBTB48 ZNF341 SLC6A1-AS1 SLC6A1 HRH1 LOC105376951
GH03F011060 0.9 Ensembl ENCODE 11.3 -42.1 -42068 1.4 ZNF263 CTCF ZNF654 ZBTB8A REST ZNF2 RAD21 HIC1 ZNF341 NFYB SLC6A1-AS1 SLC6A1 LOC101927467
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SLC6A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC6A1-AS1 Gene

Chromosome:
3
Start:
11,006,098 bp from pter
End:
11,019,224 bp from pter
Size:
13,127 bases
Orientation:
Minus strand

Genomic View for SLC6A1-AS1 Gene

Genes around SLC6A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC6A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC6A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC6A1-AS1 Gene

Proteins for SLC6A1-AS1 Gene

Post-translational modifications for SLC6A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC6A1-AS1 Gene

Domains & Families for SLC6A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC6A1-AS1 Gene

Function for SLC6A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC6A1-AS1 Gene

Localization for SLC6A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC6A1-AS1 Gene

Pathways & Interactions for SLC6A1-AS1 Gene

SuperPathways for SLC6A1-AS1 Gene

No Data Available

Interacting Proteins for SLC6A1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC6A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC6A1-AS1 Gene

Transcripts for SLC6A1-AS1 Gene

mRNA/cDNA for SLC6A1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC6A1-AS1 Gene

SLC6A1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC6A1-AS1 Gene

No ASD Table

Relevant External Links for SLC6A1-AS1 Gene

GeneLoc Exon Structure for
SLC6A1-AS1
ECgene alternative splicing isoforms for
SLC6A1-AS1

Expression for SLC6A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC6A1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC6A1-AS1 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for SLC6A1-AS1 Gene:

Hs.628542
genes like me logo Genes that share expression patterns with SLC6A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC6A1-AS1 Gene

Orthologs for SLC6A1-AS1 Gene

Evolution for SLC6A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC6A1-AS1 (if available)
TreeFam:
Gene Tree for SLC6A1-AS1 (if available)

No data available for Orthologs for SLC6A1-AS1 Gene

Paralogs for SLC6A1-AS1 Gene

No data available for Paralogs for SLC6A1-AS1 Gene

Variants for SLC6A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC6A1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs794726859 Pathogenic 11,017,342(+) CGACC(A/G)GGACA intron-variant, reference, missense
rs1028152 -- 11,019,569(+) tggat(A/G)ctgac intron-variant, upstream-variant-2KB
rs111398823 -- 11,010,333(+) GCTGT(C/G)TCTTG intron-variant, upstream-variant-2KB
rs111649624 -- 11,005,613(+) TTCCT(A/C)CTGTT intron-variant, downstream-variant-500B
rs112032474 -- 11,018,549(+) ACAGT(C/T)CATGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC6A1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv518622 CNV loss 19592680
nsv508209 CNV deletion 20534489
nsv436869 CNV insertion 17901297
nsv436362 CNV deletion 17901297
nsv1121603 CNV deletion 24896259
nsv1073204 CNV deletion 25765185
esv4117 OTHER complex 18987735
dgv762e201 CNV deletion 23290073

Relevant External Links for SLC6A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC6A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC6A1-AS1 Gene

Disorders for SLC6A1-AS1 Gene

Relevant External Links for SLC6A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC6A1-AS1

No disorders were found for SLC6A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC6A1-AS1 Gene

Publications for SLC6A1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SLC6A1-AS1 Gene

Sources for SLC6A1-AS1 Gene

Content
Loading form....