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Aliases & Descriptions for SLC5A5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| NIS 1, 2, 3, 5 | | Na(+)/I(-)-symporter 3 |
| | | Descriptions |
|---|
| Na(+)/I(-) cotransporter 3 | | Sodium-iodide symporter 2, 3 | | Solute carrier family 5 member 5 3 | | solute carrier family 5 (sodium iodide symporter), member 5 2 |
|
| | Search outside databases for aliases for SLC5A5 genePrevious GC identifers: GC19P018476 GC19P018374 GC19P017827 |
Summaries for SLC5A5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SLC5A5: The sodium-iodide symporter (NIS, or SLC5A5) is a key plasma membrane protein that mediates active I- uptake in thyroid, lactating breast, and other tissues with an electrogenic stoichiometry of 2 Na+ per I-. In thyroid, NIS-mediated I- uptake is the first step in the biosynthesis of iodine-containing thyroid hormones (Dohan et al., 2007 [PubMed 18077370]).[supplied by OMIM] UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911Function: Mediates iodide uptake in the thyroid glandGene Wiki entry for SLC5A5 (Sodium-iodide_symporter) |
Genomic Location for SLC5A5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SLC5A5 gene 
Entrez Gene cytogenetic band: 19p13.2-p12 Ensembl cytogenetic band: 19p13.11 HGNC cytogenetic band: 19p13.2-p12SLC5A5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P017843:
(about GC identifiers)
Start:
|
17,843,782 bp from pter |
End:
|
17,865,897 bp from pter |
Size:
|
22,116 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000019.8 NT_011295.10
| Proteins for SLC5A5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911 (See
protein sequence)Recommended Name: Sodium/iodide cotransporter Size: 643 amino acids; 68666 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: O43702 Q2M335 Q9NYB6Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000444.1
ENSEMBL proteins: ENSP00000222248
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SLC5A5: Assays for SLC5A5: | Protein
Domains/ Families for SLC5A5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q92911
ProtoNet protein and cluster: Q92911 1 Blocks protein family: IPB001734 Na+/solute symporter
UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family | Gene Function for SLC5A5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000453
Applied Biosystems Silencer® siRNAs for SLC5A5
Sigma-Aldrich siRNA and siRNA Panels for SLC5A5  Sigma-Aldrich shRNA for SLC5A5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000453                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000453                                  untagged cDNA clone in CMV expression vector: NM_000453 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000453
UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911Function: Mediates iodide uptake in the thyroid glandGenatlas biochemistry entry for SLC5A5:solute carrier family 5 member 5,sodium iodide symporter,expressed in thyroid,breast,colon and ovary,involved in thyroid hormone synthesis and metabolism pathway5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for SLC5A5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for SLC5A5 
5/23 Interacting proteins for SLC5A5 (ENSP000002222483) via UniProtKB, MINT, and/or STRING (see all 23
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for SLC5A5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SLC5A5 9 Novoseek chemical compound relationships for SLC5A5 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| sodium iodide |
95.34 |
13 |
18205108 (3), 10895037 (1), 16500013 (1), 19098211 (1) (see all 7) |
| iodide |
91.26 |
43 |
18708479 (5), 12028133 (3), 10487695 (3), 15850642 (3) (see all 20) |
| perchlorate |
70.80 |
3 |
15850642 (1), 16500013 (1), 14633711 (1) |
| iodine |
59.96 |
2 |
18205108 (1), 14757968 (1) |
| 125i |
57.23 |
2 |
15347726 (2) |
| sodium |
56.67 |
7 |
12028133 (1), 11061512 (1), 10487695 (1), 14757968 (1) (see all 7) |
| luteolin |
53.86 |
1 |
15080787 (1) |
| kaempferol |
50.99 |
1 |
15080787 (1) |
| oligonucleotide |
3.77 |
1 |
9589686 (1) |
About this table
|
Transcripts for SLC5A5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000453
Sigma-Aldrich siRNA and siRNA Panels for SLC5A5  Sigma-Aldrich shRNA for SLC5A5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000453 REFSEQ mRNAs for SLC5A5 gene: NM_000453.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000453               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000453                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000453                                  untagged cDNA clone in CMV expression vector: NM_000453  Additional cDNA sequence: AF260700.1 BC105047.1 BC105049.1 BX648217.1 D87920.1 U66088.1 2 DOTS entries: DT.106024 DT.101975701 6 AceView cDNA sequences:U66088 NM_000453 BX648217 D87920 AF260700 BX509090
highest scoring ESTs for SLC5A5:U66088 AF260700 D87920 BX648217 NM_000453 BC105047 BC105049 BX509090 AA664278 BF934731 Unigene Cluster for SLC5A5: Solute carrier family 5 (sodium iodide symporter), member 5 Hs.584804 [show with all ESTs]Unigene Representative Sequence: NM_000453
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for SLC5A5
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SLC5A5
1 Ensembl transcript including schematic representation: ENST00000222248
|
Expression for SLC5A5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SLC5A5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SLC5A5
1 / 2 / 3 3 probe-sets matching SLC5A5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCCCTACTGA
SOURCE GeneReport for Unigene cluster: Hs.584804
Expression variation in blood from EXPOLDB for SLC5A5 UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911Tissue specificity: Expression is primarily in thyroid tissue, but also to a lower extent in mammary gland and ovary. Expression is reduced in tumors |
Orthologs for SLC5A5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SLC5A5 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for SLC5A5
ENSEMBL Gene Tree for SLC5A5 | Paralogs for SLC5A5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SLC5A5 gene
- SLC5A82 SLC5A122
|
SNPs/Variants for SLC5A5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SLC5A5 (up to first 250kb)
|
Disorders & Mutations for SLC5A5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601843 disorders: 274400 UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911
Defects in SLC5A5 are the cause of congenital hypothyroidism due to dyshormonogenesis type 1 (CHDH1) [MIM:274400]. CHDH1 is characterized by an inability of the thyroid to maintain a concentration difference of readily exchangeable iodine between the plasma and the thyroid gland, leading to congenital hypothyroidism10 Novoseek disease relationships for SLC5A5 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| congenital hypothyroidism |
68.95 |
2 |
10895037 (1), 10487695 (1) |
| thyroid cancer |
68.87 |
5 |
11061512 (3), 14757968 (1), 18202121 (1) |
| thyroid carcinoma |
56.65 |
4 |
11454507 (2), 11061512 (1) |
| autoimmune thyroid disease |
44.68 |
1 |
14550956 (1) |
| thyroid diseases |
42.31 |
6 |
16121204 (1), 18205108 (1), 11716040 (1) |
| thyroid papillary carcinoma |
39.76 |
1 |
17639055 (1) |
| hypothyroidism |
32.14 |
13 |
16418213 (2) |
| tumors |
21.77 |
14 |
14633711 (2), 18058866 (2), 18676766 (1), 17931047 (1) (see all 8) |
| cancer |
9.42 |
2 |
18205108 (1), 17854396 (1) |
| carcinoma |
0.00 |
3 |
11454507 (1), 14550956 (1) |
About this table
Genatlas disease: SLC5A5 congenital hypothyroidism with goiter,low thyroidal and salivary gland radioiodide uptake Human Gene Mutation Database: SLC5A5
|
Medical News for SLC5A5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SLC5A5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/108 PubMed articles for SLC5A5 gene (see all 108
):- A novel mutation in the sodium/iodide symporter gene in the largest family with iodide transport defect. (PubMed id 10487695)1, 3, 4 Kosugi S.... Dean H.J. (1999)
- The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)3, 4 Grimwood J.... Lucas S.M. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Novel, missense and loss-of-function mutations in the sodium/iodide symporter gene causing iodide transport defect in three Japanese patients. (PubMed id 9745458)3, 4 Kosugi S.... Jhiang S.M. (1998)
- Congenital hypothyroidism due to mutations in the sodium/iodide symporter: identification of a nonsense mutation producing a downstream cryptic 3' splice site. (PubMed id 9486973)3, 4 Pohlenz J....Refetoff S. (1998)
- Increased expression of the Na+/I- symporter in cultured human thyroid cells exposed to thyrotropin and in Graves' thyroid tissue. (PubMed id 9329364)3, 4 Saito T....Onaya T. (1997)
- Expression, exon-intron organization, and chromosome mapping of the human sodium iodide symporter. (PubMed id 9231811)2, 3 Smanik P.A....Jhiang S.M. (1997)
- Congenital hypothyroidism caused by a mutation in the Na(+)/I(-) symporter. (PubMed id 9171822)3, 4 Fujiwara H....Amino N. (1997)
- Cloning of the human sodium iodide symporter. (PubMed id 8806637)3, 4 Smanik P.A....Jhiang S.M. (1996)
- Identification of cyclic adenosine 3',5'-monophosphate response element modulator as an activator of the human sodium/iodide symporter upstream enhancer. (PubMed id 18202121)1, 3 Fenton M.S....Hershman J.M. (2008)
|
Search for SLC5A5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SLC5A5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SLC5A5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SLC5A5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=SLC5A5 |
|
| | | About This Section
| --
| Services for SLC5A5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SLC5A5:

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Incremental update: 13 Oct 2009
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