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SLC5A5 Gene

protein-coding   GIFtS: 60

GC19P017843
solute carrier family 5 (sodium iodide symporter), member 5
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
NIS 1, 2, 3, 5
Na(+)/I(-)-symporter 3
Descriptions
Na(+)/I(-) cotransporter 3
Sodium-iodide symporter 2, 3
Solute carrier family 5 member 5 3
solute carrier family 5 (sodium iodide symporter), member 5 2
External Ids
HGNC: 110401
Entrez Gene: 65282
UniProtKB: Q929113
Ensembl: ENSG000001056417
Search outside databases for aliases for SLC5A5 gene

Previous GC identifers: GC19P018476 GC19P018374 GC19P017827

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for SLC5A5:
The sodium-iodide symporter (NIS, or SLC5A5) is a key plasma membrane protein that mediates active
I- uptake in thyroid, lactating breast, and other tissues with an electrogenic stoichiometry of 2
Na+ per I-. In thyroid, NIS-mediated I- uptake is the first step in the biosynthesis of
iodine-containing thyroid hormones (Dohan et al., 2007 [PubMed 18077370]).[supplied by OMIM]

UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911
Function: Mediates iodide uptake in the thyroid gland

Gene Wiki entry for SLC5A5 (Sodium-iodide_symporter)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the SLC5A5 gene  

Entrez Gene cytogenetic band: 19p13.2-p12   Ensembl cytogenetic band:  19p13.11   HGNC cytogenetic band: 19p13.2-p12

SLC5A5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P017843:     (about GC identifiers)

Start:
17,843,782 bp from pter
End:
17,865,897 bp from pter
Size:
22,116 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000019.8  NT_011295.10  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911 (See protein sequence)
Recommended Name: Sodium/iodide cotransporter  
Size: 643 amino acids; 68666 Da
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: O43702 Q2M335 Q9NYB6

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_000444.1  

    ENSEMBL proteins: 
    ENSP00000222248 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (Sodium Iodide Symporter)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886 plasma membrane IEA--
    GO:0016021 integral to membrane TAS9388506
    About this table

    Antibodies for SLC5A5: 
    Browse Antibodies Central at Invitrogen
    Millipore Mono- and Polyclonal Antibodies for the study of SLC5A5
    Browse Antibodies at Sigma-Aldrich
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (Sodium Iodide Symporter), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for SLC5A5

    Assays for SLC5A5: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR019900 Na/solute_symporter_subgr
     IPR018212 Na/solute_symporter_CS
     IPR001734 Na/solute_symporter


       GeneDecks  SLC5A5 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q92911

    ProtoNet protein and cluster: Q92911

    1 Blocks protein family: IPB001734 Na+/solute symporter

    UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911
    Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (SLC5A5)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (SLC5A5)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000453

                  Applied Biosystems Silencer® siRNAs for SLC5A5

                  Sigma-Aldrich siRNA and siRNA Panels for SLC5A5  
                         Sigma-Aldrich shRNA for SLC5A5  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_000453
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_000453
                                     untagged cDNA clone in CMV expression vector: NM_000453 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_000453

    UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911
    Function: Mediates iodide uptake in the thyroid gland

    Genatlas biochemistry entry for SLC5A5:
    solute carrier family 5 member 5,sodium iodide symporter,expressed in thyroid,breast,colon and
    ovary,involved in thyroid hormone synthesis and metabolism pathway

    5 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005215 transporter activity IEA--
    GO:0008507 sodium:iodide symporter activity IEA--
    GO:0015111 iodide transmembrane transporter activity TAS9388506
    GO:0015293 symporter activity IEA--
    GO:0031402 sodium ion binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Millipore Pathway for SLC5A5
      inward current

       GeneDecks  SLC5A5 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  SLC5A5 


    5/23 Interacting proteins for SLC5A5 (ENSP000002222483) via UniProtKB, MINT, and/or STRING (see all 23 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NKX2-1ENSP000003539183STRING (score=.99)
    PAX8ENSP000002633343STRING (score=.977)
    TGENSP000002206163STRING (score=.968)
    TPOENSP000003298693STRING (score=.967)
    TSHRENSP000002981713STRING (score=.967)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006811 ion transport IEA--
    GO:0006814 sodium ion transport IEA--
    GO:0015705 iodide transport IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for SLC5A5
    9 Novoseek chemical compound relationships for SLC5A5 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    sodium iodide 95.34 13 18205108 (3), 10895037 (1), 16500013 (1), 19098211 (1) (see all 7)
    iodide 91.26 43 18708479 (5), 12028133 (3), 10487695 (3), 15850642 (3) (see all 20)
    perchlorate 70.80 3 15850642 (1), 16500013 (1), 14633711 (1)
    iodine 59.96 2 18205108 (1), 14757968 (1)
    125i 57.23 2 15347726 (2)
    sodium 56.67 7 12028133 (1), 11061512 (1), 10487695 (1), 14757968 (1) (see all 7)
    luteolin 53.86 1 15080787 (1)
    kaempferol 50.99 1 15080787 (1)
    oligonucleotide 3.77 1 9589686 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (SLC5A5)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (SLC5A5)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000453

                  Sigma-Aldrich siRNA and siRNA Panels for SLC5A5  
                         Sigma-Aldrich shRNA for SLC5A5  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_000453  

    REFSEQ mRNAs for SLC5A5 gene: 

    NM_000453.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_000453  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_000453
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_000453
                                     untagged cDNA clone in CMV expression vector: NM_000453 

    Additional cDNA sequence: 

    AF260700.1 BC105047.1 BC105049.1 BX648217.1 D87920.1 U66088.1 

    2 DOTS entries:

    DT.106024  DT.101975701 

    6 AceView cDNA sequences:

    U66088 NM_000453 BX648217 D87920 AF260700 BX509090 

    highest scoring ESTs for SLC5A5:

    U66088 AF260700 D87920 BX648217 NM_000453 BC105047 BC105049 BX509090 AA664278 BF934731 

    Unigene Cluster for SLC5A5:

    Solute carrier family 5 (sodium iodide symporter), member 5
    Hs.584804  [show with all ESTs]
    Unigene Representative Sequence: NM_000453


    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for SLC5A5

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15
    SP1:                                                                                                      
    SP2:                                                                                                      

    About this scheme

    ECgene alternative splicing isoforms for SLC5A5

    1 Ensembl transcript including schematic representation:
    ENST00000222248  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    SLC5A5 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for SLC5A5

    1 / 2 / 3

    3 probe-sets matching SLC5A5 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    32459_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 U66088 1.00 1.00 1.00 1

    211123_at2, 3 U133-A 1 1.00 1.00 -- -- D87920 0.80 1.00 0.91 1

    211123_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GCCCTACTGA

    SOURCE GeneReport for Unigene cluster: Hs.584804

    Expression variation in blood from EXPOLDB for SLC5A5

    UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911
    Tissue specificity: Expression is primarily in thyroid tissue, but also to a lower extent in
    mammary gland and ovary. Expression is reduced in tumors

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for SLC5A5 gene from 5/10 species (see all 10 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    SLC5A51   -- solute carrier family 5 (sodium iodide symporter), more 84.84(n)
    85.2(a)
    484830  XM_541946.2  XP_541946.2 
    chimpanzee
    (Pan troglodytes)
    SLC5A51   -- solute carrier family 5 (sodium iodide symporter), more 99.53(n)
    99.38(a)
    468767  XM_524154.2  XP_524154.2 
    cow
    (Bos taurus)
    SLC5A51   -- solute carrier family 5 (sodium iodide symporter), more 85.77(n)
    88.61(a)
    505310  XM_581578.3  XP_581578.3 
    rat
    (Rattus norvegicus)
    Slc5a51   -- solute carrier family 5 (sodium iodide symporter), more 80.25(n)
    84.78(a)
    114613  NM_052983.1  NP_443215.1 
    mouse
    (Mus musculus)
    Slc5a51, 5 85
    solute carrier family 5 (sodium iodide symporter), more1, 5 80.58(n)1
    84.62(a)1
    1144791  NM_053248.11  NP_444478.11 
     AA6156905  AA6901965  (see all 13)
    About this table        Species with no ortholog for SLC5A5

    ENSEMBL Gene Tree for SLC5A5
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for SLC5A5 gene
    SLC5A82  SLC5A122  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/168 NCBI SNPs in SLC5A5 are shown (see all 168 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 38)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 19 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs81081881,2
    A,C,F,H17849825(+) CTGCCT/GGCTGT 1 G/C mis1 ese38Minor allele frequency- G:0.01EU EA WA 838
    rs123278431,2
    A,C,F,H17865912(+) AGCCCT/CGACGG 1 -- ut318Minor allele frequency- C:0.12EU EA WA 832
    rs133440001,2
    A,H17865901(+) TTAGAC/TGCTGC 1 -- ut314Minor allele frequency- T:0.00EU EA WA 416
    rs118795311,2
    C17842091(+) CAGCCA/GGCAAC 1 -- ng510--------
    rs81035451,2
    F,H17847763(+) CAGGGC/TGGCAT 1 G/G syn14Minor allele frequency- T:0.02EU EA WA 418
    rs352095361,2
    F17849794(+) CAGGTC/TGGCCT 1 V/V syn11Minor allele frequency- T:0.03NA 76
    rs72579821,2
    A,C,F,H17851584(+) CACGGG/TTCCCT 1 -- int14Minor allele frequency- T:0.21EU EA WA 418
    rs72553011,2
    A,C,F,H17845834(+) CTGGCG/AGGCGC 1 -- int17Minor allele frequency- A:0.15EU EA WA NA 556
    rs104173911,2
    A,C,F,H17850420(+) CAGACA/GAGGGC 1 -- int18Minor allele frequency- G:0.26EU EA WA 832
    rs48087081,2
    A,C,F,H17862686(+) TCCCCG/ACCTCT 1 -- int17Minor allele frequency- A:0.08EU EA WA NA 550
    About this table

    HapMap Linkage Disequilibrium images for SLC5A5 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 601843   disorders: 274400  

    UniProtKB/Swiss-Prot: SC5A5_HUMAN, Q92911

  • Defects in SLC5A5 are the cause of congenital hypothyroidism due to dyshormonogenesis type
    1 (CHDH1) [MIM:274400]. CHDH1 is characterized by an inability of the thyroid to maintain a
    concentration difference of readily exchangeable iodine between the plasma and the thyroid gland,
    leading to congenital hypothyroidism
  • 10 Novoseek disease relationships for SLC5A5 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    congenital hypothyroidism 68.95 2 10895037 (1), 10487695 (1)
    thyroid cancer 68.87 5 11061512 (3), 14757968 (1), 18202121 (1)
    thyroid carcinoma 56.65 4 11454507 (2), 11061512 (1)
    autoimmune thyroid disease 44.68 1 14550956 (1)
    thyroid diseases 42.31 6 16121204 (1), 18205108 (1), 11716040 (1)
    thyroid papillary carcinoma 39.76 1 17639055 (1)
    hypothyroidism 32.14 13 16418213 (2)
    tumors 21.77 14 14633711 (2), 18058866 (2), 18676766 (1), 17931047 (1) (see all 8)
    cancer 9.42 2 18205108 (1), 17854396 (1)
    carcinoma 0.00 3 11454507 (1), 14550956 (1)
    About this table

    Genatlas disease: SLC5A5
    congenital hypothyroidism with goiter,low thyroidal and salivary gland radioiodide uptake

    Human Gene Mutation Database: SLC5A5

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/108 PubMed articles for SLC5A5 gene (see all 108 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 6528 HGNC: 11040 AceView: SLC5A5 Ensembl:ENSG00000105641 euGenes: HUgn6528
    ECgene: SLC5A5 H-InvDB: SLC5A5
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    GeneReviewshttp://www.genetests.org/query?gene=SLC5A5
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for SLC5A5:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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