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Aliases for SLC5A5 Gene

Aliases for SLC5A5 Gene

  • Solute Carrier Family 5 (Sodium/Iodide Cotransporter), Member 5 2 3
  • NIS 3 4 6
  • Solute Carrier Family 5 (Sodium Iodide Symporter), Member 5 2 3
  • Na(+)/I(-) Cotransporter 3 4
  • Na(+)/I(-) Symporter 3 4
  • TDH1 3 6
  • Solute Carrier Family 5 Member 5 4
  • Sodium/Iodide Cotransporter 3
  • Sodium-Iodide Symporter 4

External Ids for SLC5A5 Gene

Summaries for SLC5A5 Gene

Entrez Gene Summary for SLC5A5 Gene

  • This gene encodes a member of the sodium glucose cotransporter family. The encoded protein is responsible for the uptake of iodine in tissues such as the thyroid and lactating breast tissue. The iodine taken up by the thyroid is incorporated into the metabolic regulators triiodothyronine (T3) and tetraiodothyronine (T4). Mutations in this gene are associated with thyroid dyshormonogenesis 1.[provided by RefSeq, Sep 2009]

GeneCards Summary for SLC5A5 Gene

SLC5A5 (Solute Carrier Family 5 (Sodium/Iodide Cotransporter), Member 5) is a Protein Coding gene. Diseases associated with SLC5A5 include thyroid dyshormonogenesis 1 and neonatal hypothyroidism. Among its related pathways are Metabolism and Metabolism of amino acids and derivatives. GO annotations related to this gene include iodide transmembrane transporter activity and sodium:iodide symporter activity. An important paralog of this gene is SLC5A10.

UniProtKB/Swiss-Prot for SLC5A5 Gene

  • Mediates iodide uptake in the thyroid gland

Gene Wiki entry for SLC5A5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC5A5 Gene

Genomics for SLC5A5 Gene

Genomic Location for SLC5A5 Gene

Start:
17,871,832 bp from pter
End:
17,895,174 bp from pter
Size:
23,343 bases
Orientation:
Plus strand

Genomic View for SLC5A5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLC5A5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC5A5 Gene

Regulatory Elements for SLC5A5 Gene

Proteins for SLC5A5 Gene

  • Protein details for SLC5A5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92911-SC5A5_HUMAN
    Recommended name:
    Sodium/iodide cotransporter
    Protein Accession:
    Q92911
    Secondary Accessions:
    • O43702
    • Q2M335
    • Q9NYB6

    Protein attributes for SLC5A5 Gene

    Size:
    643 amino acids
    Molecular mass:
    68666 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLC5A5 Gene

Proteomics data for SLC5A5 Gene at MOPED

Post-translational modifications for SLC5A5 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn489 and Asn502

Other Protein References for SLC5A5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for SLC5A5 Gene

Domains for SLC5A5 Gene

Protein Domains for SLC5A5 Gene

UniProtKB/Swiss-Prot:

SC5A5_HUMAN
Family:
  • Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.:
    • Q92911
genes like me logo Genes that share domains with SLC5A5: view

Function for SLC5A5 Gene

Molecular function for SLC5A5 Gene

GENATLAS Biochemistry: solute carrier family 5 member 5,sodium iodide symporter,expressed in thyroid,breast,colon and ovary,involved in thyroid hormone synthesis and metabolism pathway
UniProtKB/Swiss-Prot Function: Mediates iodide uptake in the thyroid gland

Gene Ontology (GO) - Molecular Function for SLC5A5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity --
GO:0008507 sodium:iodide symporter activity IEA --
GO:0015111 iodide transmembrane transporter activity IMP 12021185
GO:0015293 symporter activity --
genes like me logo Genes that share ontologies with SLC5A5: view

miRNA for SLC5A5 Gene

miRTarBase miRNAs that target SLC5A5

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SLC5A5 Gene

Localization for SLC5A5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC5A5 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC5A5 Gene COMPARTMENTS Subcellular localization image for SLC5A5 gene
Compartment Confidence
nucleus 5
plasma membrane 4

Gene Ontology (GO) - Cellular Components for SLC5A5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 15961562
GO:0005886 plasma membrane TAS --
GO:0016020 membrane --
GO:0016021 integral component of membrane IEA --
GO:0031982 vesicle IDA 24769233
genes like me logo Genes that share ontologies with SLC5A5: view

Pathways for SLC5A5 Gene

genes like me logo Genes that share pathways with SLC5A5: view

Pathways by source for SLC5A5 Gene

Interacting Proteins for SLC5A5 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000222248%0d%0a9606.ENSP00000264380%0d%0a
Selected Interacting proteins: ENSP00000222248 Q92911-SC5A5_HUMAN for SLC5A5 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for SLC5A5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006590 thyroid hormone generation TAS --
GO:0006810 transport TAS 8806637
GO:0006811 ion transport TAS --
GO:0015705 iodide transport IMP 12021185
GO:0034641 cellular nitrogen compound metabolic process TAS --
genes like me logo Genes that share ontologies with SLC5A5: view

Compounds for SLC5A5 Gene

(1) HMDB Compounds for SLC5A5 Gene

Compound Synonyms Cas Number PubMed IDs
Sodium
  • Sodium
7440-23-5

(9) Novoseek inferred chemical compound relationships for SLC5A5 Gene

Compound -log(P) Hits PubMed IDs
sodium iodide 95 9
iodide 91.4 37
perchlorate 69.2 3
iodine 60.8 2
sodium 58.1 9
genes like me logo Genes that share compounds with SLC5A5: view

Transcripts for SLC5A5 Gene

mRNA/cDNA for SLC5A5 Gene

(4) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC5A5 Gene

Solute carrier family 5 (sodium iodide symporter), member 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC5A5 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15
SP1:
SP2:

Relevant External Links for SLC5A5 Gene

GeneLoc Exon Structure for
SLC5A5
ECgene alternative splicing isoforms for
SLC5A5

Expression for SLC5A5 Gene

mRNA expression in normal human tissues for SLC5A5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SLC5A5 Gene

This gene is overexpressed in Stomach (22.6), Cervix - Endocervix (8.5), Thyroid (7.6), and Minor Salivary Gland (5.1).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SLC5A5 Gene

SOURCE GeneReport for Unigene cluster for SLC5A5 Gene Hs.584804

mRNA Expression by UniProt/SwissProt for SLC5A5 Gene

Q92911-SC5A5_HUMAN
Tissue specificity: Expression is primarily in thyroid tissue, but also to a lower extent in mammary gland and ovary. Expression is reduced in tumors.
genes like me logo Genes that share expressions with SLC5A5: view

Orthologs for SLC5A5 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLC5A5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC5A5 36
  • 99.48 (n)
  • 99.38 (a)
SLC5A5 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLC5A5 36
  • 85.77 (n)
  • 88.61 (a)
SLC5A5 37
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC5A5 36
  • 84.84 (n)
  • 85.2 (a)
SLC5A5 37
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc5a5 36
  • 80.59 (n)
  • 84.34 (a)
Slc5a5 16
Slc5a5 37
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLC5A5 37
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC5A5 37
  • 54 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc5a5 36
  • 80.15 (n)
  • 84.34 (a)
chicken
(Gallus gallus)
Aves SLC5A5 36
  • 71.66 (n)
  • 72.98 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 43 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia slc5a5 36
  • 64.54 (n)
  • 69.89 (a)
Str.19489 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3359 36
zebrafish
(Danio rerio)
Actinopterygii slc5a5 36
  • 62.08 (n)
  • 63.16 (a)
slc5a5 37
  • 60 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG2187 37
  • 29 (a)
ManyToMany
CG31262 37
  • 28 (a)
ManyToMany
CG31668 37
  • 30 (a)
ManyToMany
CG33124 37
  • 28 (a)
ManyToMany
CG42235 37
  • 27 (a)
ManyToMany
CG5687 37
  • 27 (a)
ManyToMany
CG6723 37
  • 32 (a)
ManyToMany
CG7720 37
  • 27 (a)
ManyToMany
CG8451 37
  • 29 (a)
ManyToMany
CG9657 37
  • 31 (a)
ManyToMany
salt 37
  • 30 (a)
ManyToMany
Smvt 37
  • 31 (a)
ManyToMany
CG8957 38
  • 34 (a)
CG8451 38
  • 29 (a)
CG2187 38
  • 33 (a)
CG5687 38
  • 33 (a)
CG2196 38
  • 33 (a)
CG10444 38
  • 38 (a)
CG7720 38
  • 31 (a)
CG8966 38
  • 34 (a)
CG6723 38
  • 34 (a)
CG2191 38
  • 32 (a)
CG9657 38
  • 31 (a)
CG8934 38
  • 32 (a)
worm
(Caenorhabditis elegans)
Secernentea F52H2.4 37
  • 28 (a)
ManyToMany
ZK822.5 37
  • 28 (a)
ManyToMany
ZK822.5 38
  • 31 (a)
F52H2.4 38
  • 29 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 39 (a)
ManyToMany
Species with no ortholog for SLC5A5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC5A5 Gene

ENSEMBL:
Gene Tree for SLC5A5 (if available)
TreeFam:
Gene Tree for SLC5A5 (if available)

Paralogs for SLC5A5 Gene

Selected SIMAP similar genes for SLC5A5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLC5A5: view

Variants for SLC5A5 Gene

Sequence variations from dbSNP and Humsavar for SLC5A5 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs740695 -- 17,872,752(-) CCAAA(A/G)CCCCA intron-variant
rs755922 -- 17,872,330(+) GGCCG(A/T)GGAGA missense, reference, intron-variant
rs2299454 -- 17,880,466(+) cacct(C/T)gacct intron-variant
rs4274533 -- 17,887,996(+) cagtc(A/T)cgaag intron-variant
rs4462721 -- 17,885,353(+) tttTG(G/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC5A5 Gene

Variant ID Type Subtype PubMed ID
nsv911209 CNV Loss 21882294
nsv911214 CNV Loss 21882294
nsv911219 CNV Loss 21882294
dgv3766n71 CNV Loss 21882294
nsv833772 CNV Gain+Loss 17160897
esv2672635 CNV Deletion 23128226

Relevant External Links for SLC5A5 Gene

HapMap Linkage Disequilibrium report
SLC5A5
Human Gene Mutation Database (HGMD)
SLC5A5

Disorders for SLC5A5 Gene

(1) OMIM Diseases for SLC5A5 Gene (601843)

UniProtKB/Swiss-Prot

SC5A5_HUMAN
  • Thyroid dyshormonogenesis 1 (TDH1) [MIM:274400]: A disorder characterized by the inability of the thyroid to maintain a concentration difference of readily exchangeable iodine between the plasma and the thyroid gland, leading to congenital hypothyroidism. {ECO:0000269 PubMed:10487695, ECO:0000269 PubMed:9171822, ECO:0000269 PubMed:9486973, ECO:0000269 PubMed:9745458}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(3) University of Copenhagen DISEASES for SLC5A5 Gene

(11) Novoseek inferred disease relationships for SLC5A5 Gene

Disease -log(P) Hits PubMed IDs
congenital hypothyroidism 74.1 4
thyroid cancer 67.2 5
thyroid carcinoma 55 3
goiter 53.6 1
autoimmune thyroid disease 42.9 1

Genatlas disease for SLC5A5 Gene

congenital hypothyroidism with goiter,low thyroidal and salivary gland radioiodide uptake

Relevant External Links for SLC5A5

Human Genome Epidemiology (HuGE) Navigator
SLC5A5
genes like me logo Genes that share disorders with SLC5A5: view

Publications for SLC5A5 Gene

  1. A novel mutation in the sodium/iodide symporter gene in the largest family with iodide transport defect. (PMID: 10487695) Kosugi S. … Dean H.J. (J. Clin. Endocrinol. Metab. 1999) 3 4 23
  2. Molecular characteristics in papillary thyroid cancers (PTCs) with no 131I uptake. (PMID: 17854396) Mian C. … Girelli M.E. (Clin. Endocrinol. (Oxf) 2008) 3 23
  3. Identification of cyclic adenosine 3',5'-monophosphate response element modulator as an activator of the human sodium/iodide symporter upstream enhancer. (PMID: 18202121) Fenton M.S. … Hershman J.M. (Endocrinology 2008) 3 23
  4. Histidine residue at position 226 is critical for iodide uptake activity of human sodium/iodide symporter. (PMID: 18708479) Wu S.L. … Hsiang C.Y. (J. Endocrinol. 2008) 3 23
  5. Expression of the sodium iodide symporter in human kidney. (PMID: 11231356) Spitzweg C. … Morris J.C. (Kidney Int. 2001) 3 23

Products for SLC5A5 Gene

  • antibodies-online peptides for SLC5A5
  • antibodies-online antibodies for SLC5A5
  • antibodies-online kits for SLC5A5

Sources for SLC5A5 Gene

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