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Aliases for SLC5A4 Gene

Aliases for SLC5A4 Gene

  • Solute Carrier Family 5 Member 4 2 3 4
  • Solute Carrier Family 5 (Glucose Activated Ion Channel), Member 4 2 3 5
  • Solute Carrier Family 5 (Low Affinity Glucose Cotransporter), Member 4 2 3
  • Sodium/Glucose Cotransporter 3 3 4
  • Na(+)/Glucose Cotransporter 3 3 4
  • SAAT1 3 4
  • Solute Carrier Family 5 (Neutral Amino Acid Transporters, System A), Member 4 3
  • Low Affinity Sodium Glucose Cotransporter 3
  • Sodium Transporter 3
  • DJ90G24.4 3
  • SGLT2 4
  • SGLT3 3

External Ids for SLC5A4 Gene

Previous GeneCards Identifiers for SLC5A4 Gene

  • GC22M029310
  • GC22M030939
  • GC22M032614
  • GC22M015572

Summaries for SLC5A4 Gene

GeneCards Summary for SLC5A4 Gene

SLC5A4 (Solute Carrier Family 5 Member 4) is a Protein Coding gene. Diseases associated with SLC5A4 include Endocrine Pancreas Disease and Pancreas Disease. Among its related pathways are Glycosaminoglycan metabolism and Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds. GO annotations related to this gene include transporter activity and symporter activity. An important paralog of this gene is SLC5A10.

UniProtKB/Swiss-Prot for SLC5A4 Gene

  • Sodium-dependent glucose transporter.

Gene Wiki entry for SLC5A4 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC5A4 Gene

Genomics for SLC5A4 Gene

Regulatory Elements for SLC5A4 Gene

Enhancers for SLC5A4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SLC5A4 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC5A4 Gene

Chromosome:
22
Start:
32,218,421 bp from pter
End:
32,353,008 bp from pter
Size:
134,588 bases
Orientation:
Minus strand

Genomic View for SLC5A4 Gene

Genes around SLC5A4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC5A4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC5A4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC5A4 Gene

Proteins for SLC5A4 Gene

  • Protein details for SLC5A4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NY91-SC5A4_HUMAN
    Recommended name:
    Low affinity sodium-glucose cotransporter
    Protein Accession:
    Q9NY91
    Secondary Accessions:
    • O15279

    Protein attributes for SLC5A4 Gene

    Size:
    659 amino acids
    Molecular mass:
    72456 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SLC5A4 Gene

Proteomics data for SLC5A4 Gene at MOPED

Post-translational modifications for SLC5A4 Gene

  • Glycosylation at Asn 248
  • Modification sites at PhosphoSitePlus

Other Protein References for SLC5A4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SLC5A4 Gene

Domains & Families for SLC5A4 Gene

Gene Families for SLC5A4 Gene

Protein Domains for SLC5A4 Gene

Suggested Antigen Peptide Sequences for SLC5A4 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NY91

UniProtKB/Swiss-Prot:

SC5A4_HUMAN :
  • Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
Family:
  • Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
genes like me logo Genes that share domains with SLC5A4: view

Function for SLC5A4 Gene

Molecular function for SLC5A4 Gene

GENATLAS Biochemistry:
solute carrier family 5,neutral amino acid transporters,system A,member 4,expressed in kidney,small intestine,spleen,liver,muscle
UniProtKB/Swiss-Prot Function:
Sodium-dependent glucose transporter.

Gene Ontology (GO) - Molecular Function for SLC5A4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005412 glucose:sodium symporter activity IBA --
genes like me logo Genes that share ontologies with SLC5A4: view

Phenotypes for SLC5A4 Gene

GenomeRNAi human phenotypes for SLC5A4:
genes like me logo Genes that share phenotypes with SLC5A4: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC5A4

CRISPR Products

miRNA for SLC5A4 Gene

miRTarBase miRNAs that target SLC5A4

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC5A4 Gene

Localization for SLC5A4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC5A4 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC5A4 Gene COMPARTMENTS Subcellular localization image for SLC5A4 gene
Compartment Confidence
plasma membrane 4
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for SLC5A4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
genes like me logo Genes that share ontologies with SLC5A4: view

Pathways & Interactions for SLC5A4 Gene

genes like me logo Genes that share pathways with SLC5A4: view

Pathways by source for SLC5A4 Gene

Interacting Proteins for SLC5A4 Gene

Gene Ontology (GO) - Biological Process for SLC5A4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006814 sodium ion transport IEA,IBA --
GO:1904659 glucose transmembrane transport IBA --
genes like me logo Genes that share ontologies with SLC5A4: view

No data available for SIGNOR curated interactions for SLC5A4 Gene

Drugs & Compounds for SLC5A4 Gene

(4) Drugs for SLC5A4 Gene - From: ClinicalTrials, ApexBio, and DGIdb

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Canagliflozin Approved Pharma Inhibition, Inhibitor SGLT2 inhibitor,potent and selective 98
Hypoglycemic Agents Pharma 5465
Empagliflozin (BI 10773) Pharma SGLT-2 inhibitor for oral treatment of type 2 diabetes 0
Glufosfamide Pharma inhibitor 0

(4) Additional Compounds for SLC5A4 Gene - From: Novoseek and HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5

(1) ApexBio Compounds for SLC5A4 Gene

Compound Action Cas Number
Empagliflozin (BI 10773) SGLT-2 inhibitor for oral treatment of type 2 diabetes 864070-44-0
genes like me logo Genes that share compounds with SLC5A4: view

Transcripts for SLC5A4 Gene

mRNA/cDNA for SLC5A4 Gene

(5) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC5A4 Gene

Solute carrier family 5 (low affinity glucose cotransporter), member 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC5A4 Gene

No ASD Table

Relevant External Links for SLC5A4 Gene

GeneLoc Exon Structure for
SLC5A4
ECgene alternative splicing isoforms for
SLC5A4

Expression for SLC5A4 Gene

mRNA expression in normal human tissues for SLC5A4 Gene

SOURCE GeneReport for Unigene cluster for SLC5A4 Gene Hs.130101

genes like me logo Genes that share expression patterns with SLC5A4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SLC5A4 Gene

Orthologs for SLC5A4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SLC5A4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LOC527441 35
  • 84.72 (n)
  • 81.03 (a)
SLC5A4 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC100685907 35
  • 85.03 (n)
  • 83.76 (a)
SLC5A4 36
  • 84 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC5A4 35
  • 99.09 (n)
  • 98.94 (a)
SLC5A4 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC102550704 35
  • 81.08 (n)
  • 80.27 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 68 (a)
OneToMany
-- 36
  • 71 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Slc5a4a 36
  • 79 (a)
OneToMany
Slc5a4b 36
  • 77 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SLC5A4 36
  • 65 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 52 (a)
ManyToMany
-- 36
  • 50 (a)
ManyToMany
CSA.349 36
  • 53 (a)
ManyToMany
Species with no ortholog for SLC5A4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SLC5A4 Gene

ENSEMBL:
Gene Tree for SLC5A4 (if available)
TreeFam:
Gene Tree for SLC5A4 (if available)

Paralogs for SLC5A4 Gene

(6) SIMAP similar genes for SLC5A4 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with SLC5A4: view

Variants for SLC5A4 Gene

Sequence variations from dbSNP and Humsavar for SLC5A4 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs2235171 - 32,254,213(+) CATCG(C/T)CTGAG upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs16990065 - 32,255,319(+) TAACC(A/G)TACTG intron-variant, upstream-variant-2KB, reference, missense
rs2092051 -- 32,300,377(+) TTTAA(A/G)CCAGT intron-variant
rs2092052 -- 32,300,463(+) AAGGG(A/C)ACTCC intron-variant
rs2092053 -- 32,300,584(+) AACCC(A/G)GTACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC5A4 Gene

Variant ID Type Subtype PubMed ID
esv2422247 CNV Duplication 17116639
nsv834178 CNV Loss 17160897
nsv459874 CNV Gain 19166990
nsv3597 CNV Loss 18451855
esv2672031 CNV Deletion 23128226

Variation tolerance for SLC5A4 Gene

Residual Variation Intolerance Score: 97% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.88; 74.18% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SLC5A4 Gene

Disorders for SLC5A4 Gene

MalaCards: The human disease database

(4) MalaCards diseases for SLC5A4 Gene - From: DISEASES

Disorder Aliases PubMed IDs
endocrine pancreas disease
  • disorder of endocrine pancreas
pancreas disease
  • pancreatic diseases
glucose metabolism disease
  • disorder of glucose metabolism
acquired metabolic disease
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SLC5A4

Genetic Association Database (GAD)
SLC5A4
Human Genome Epidemiology (HuGE) Navigator
SLC5A4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC5A4
genes like me logo Genes that share disorders with SLC5A4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC5A4 Gene

Publications for SLC5A4 Gene

  1. Neuroticism mediates the association of the serotonin transporter gene with lifetime major depression. (PMID: 16319503) MunafA^ M.R. … Johnstone E.C. (Neuropsychobiology 2006) 3 48 67
  2. A single amino acid change converts the sugar sensor SGLT3 into a sugar transporter. (PMID: 20421923) Bianchi L. … DA-ez-Sampedro A. (PLoS ONE 2010) 3 23
  3. The sodium/substrate symporter family: structural and functional features. (PMID: 12354616) Jung H. (FEBS Lett. 2002) 2 3
  4. Transport of the new chemotherapeutic agent beta-D-glucosylisophosphoramide mustard (D-19575) into tumor cells is mediated by the Na+-D-glucose cotransporter SAAT1. (PMID: 9501190) Veyhl M. … Koepsell H. (Proc. Natl. Acad. Sci. U.S.A. 1998) 2 3
  5. Metabolic effects of portal vein sensing. (PMID: 25200297) Mithieux G. (Diabetes Obes Metab 2014) 3

Products for SLC5A4 Gene

Sources for SLC5A4 Gene

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