SLC4A9 Gene
protein-coding GIFtS: 46
GCID: GC05P139719
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solute carrier family 4, sodium bicarbonate cotransporter,...
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Aliases
for SLC4A9 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Solute Carrier Family 4, Sodium Bicarbonate Cotransporter, Member 91 2 | | Solute Carrier Family 4, Sodium Bicarbonate Cotransporter-Like, Member 92 | | AE41 2 3 | | SBC53 | | Anion Exchanger 42 3 | | AE 43 | | Sodium Bicarbonate Cotransporter 52 3 | | Solute Carrier Family 4 Member 93 | | Anion Exchange Protein 42 | | |
Export aliases for SLC4A9 gene to outside databasesPrevious GC identifers: GC05P139556 GC05P140322 GC05P139722 GC05P139768 GC05P134884 |
Summaries
for SLC4A9 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for SLC4A9:
The protein encoded by this gene is a membrane protein involved in anion exchange. Expression of this gene is mostlylimited to the kidney. Several transcript variants encoding different isoforms have been found for this gene.(provided by RefSeq, May 2012)
UniProtKB/Swiss-Prot: B3A4_HUMAN, Q96Q91Function: Probable apical anion exchanger of the kidney cortex (By similarity)
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Genomic Views
for SLC4A9 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000005.9 NC_018916.1 NT_029289.11
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the SLC4A9 gene promoter:
ER-alpha STAT1 STAT1beta STAT5A Nkx2-5 GATA-2 STAT1alpha CREB FOXC1 NF-kappaB1
Other transcription factors
Search SABiosciences Chromatin IP Primers for SLC4A9
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC4A9 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 5q31 Ensembl cytogenetic band: 5q31.3 HGNC cytogenetic band: 5q31.3SLC4A9 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P139719: view genomic region
(about GC identifiers)
Start:
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139,739,787 bp from pter |
End:
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139,754,722 bp from pter |
Size:
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14,936 bases |
Orientation:
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plus strand |
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Proteins
for SLC4A9 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: B3A4_HUMAN, Q96Q91 (See
protein sequence)Recommended Name: Anion exchange protein 4 Size: 983 amino acids; 108248 Da
Subcellular location: Membrane; Multi-pass membrane protein
Sequence caution: Sequence=AAK28832.1; Type=Erroneous initiation;
Secondary accessions: B7ZL63 D3DQD4 D3DQD5 D3DQD6 E9PDK1 Q96RM5 Q9BXF2 Q9BXN3Alternative splicing: 4 isoforms: Q96Q91-1 Q96Q91-2 Q96Q91-3 Q96Q91-4 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for SLC4A9: NX_Q96Q91
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q96Q91
SLC4A9 Protein expression data from MOPED and PaxDb: --
REFSEQ proteins (4 alternative transcripts):
NP_001245355.1 NP_001245356.1 NP_001245357.1 NP_113655.2
ENSEMBL proteins: ENSP00000424424 ENSP00000422855 ENSP00000410056 ENSP00000427661 ENSP00000230993 Reactome Protein details: Q96Q91
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
SLC4A9 for ontologies About GeneDecksing
SLC4A9 Antibody Products:
Assay Products for SLC4A9: |
Protein
Domains /
Families
for SLC4A9 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
SLC4A9 for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q96Q91ProtoNet protein and cluster: Q96Q91 1 Blocks protein family: IPB013769 HCO3- transporter
UniProtKB/Swiss-Prot: B3A4_HUMAN, Q96Q91Similarity: Belongs to the anion exchanger (TC 2.A.31) family |
Function
for SLC4A9 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: B3A4_HUMAN, Q96Q91Function: Probable apical anion exchanger of the kidney cortex (By similarity)
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SLC4A9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SLC4A9
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for SLC4A9 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLC4A9 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC4A9 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005452 | inorganic anion exchanger activity |
IEA | -- | | GO:0015301 | anion:anion antiporter activity |
-- | -- |
SLC4A9 for ontologies About GeneDecksing
Animal Models:
Mouse knock-out Slc4a9tm1Ges for SLC4A9
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Slc4a9):
SLC4A9 for phenotypes About GeneDecksing
|
Pathways & Interactions
for SLC4A9 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | SLC-mediated transmembrane transport | | | 2 | Bicarbonate transporters | | | 3 | Amino acid and oligopeptide SLC transporters | |
Pathway sources
See GeneCards unified pathways
Show all pathways
4 
Reactome Pathways for SLC4A9
SLC4A9 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC4A9
Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table
SLC4A9 for ontologies About GeneDecksing
|
Drugs & Compounds
for SLC4A9 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
SLC4A9 for compounds About GeneDecksing
 Browse Tocris compounds for SLC4A9
2 Novoseek chemical compound relationships for SLC4A9 gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| sodium bicarbonate |
69.9 |
1 |
11305939 (1) |
| bicarbonate |
68.2 |
3 |
12027220 (1), 11302728 (1) |
Search CenterWatch for drugs/clinical trials and news about SLC4A9 / B3A4
|
Transcripts
for SLC4A9 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for SLC4A9 gene (4 alternative transcripts): NM_001258426.1 NM_001258427.1 NM_001258428.1 NM_031467.2 Unigene Cluster for SLC4A9: Solute carrier family 4, sodium bicarbonate cotransporter, member 9 Hs.550313 [show with all ESTs]Unigene Representative Sequence: NM_0012584287 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000506757(uc003lfj.2) ENST00000506545 ENST00000432095 ENST00000507527(uc003lfm.2 uc011czg.1)
ENST00000514849 ENST00000504742 ENST00000230993(uc003lfl.2 uc003lfk.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SLC4A9 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SLC4A9
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: SLC4A9 (NM_031467) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SLC4A9 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLC4A9 |
Additional cDNA sequence: AB032762.1 AF313465.1 AF332961.1 AF336237.1 BC136262.1 BC143602.1 5 DOTS entries: DT.99958297 DT.97835984 DT.65286618 DT.75100758 DT.101977341 22 AceView cDNA sequences: AF332961 CB046220 AI928209 AB032762 AF336237 AF313465 NM_031467 AA917682 CK002375 AW779828 BE048480 BX090920 CB046221 AI762331 AI498467 AW195628 AI927652 BF197548 AI183992 BF826315 AW058525 AI434423
GeneLoc Exon Structure
|
Expression
for SLC4A9 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| SLC4A9 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTTGCTGTGC
About this image
Genevestigator expression for SLC4A9
SOURCE GeneReport for Unigene cluster: Hs.550313
UniProtKB/Swiss-Prot: B3A4_HUMAN, Q96Q91Tissue specificity: Kidney specific
SABiosciences Custom PCR Arrays for SLC4A9
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SLC4A9
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat SLC4A9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC4A9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC4A9 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC4A9 |
Orthologs
for SLC4A9 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for SLC4A9 gene from 7/20 species (see all 20) About this table
ENSEMBL Gene Tree for SLC4A9 (if available)
TreeFam Gene Tree for SLC4A9 (if available) |
Paralogs
for SLC4A9 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for SLC4A9 gene
- SLC4A52 SLC4A82 SLC4A22 SLC4A42 SLC4A102 SLC4A72 SLC4A32 SLC4A12
- SLC4A112
9 SIMAP similar genes for SLC4A9 using alignment to 1 protein entry: B3A4_HUMAN:SLC4A4 SLC4A7 SLC4A10 NBC SLC4A5 SLC4A8
SLC4A1 SLC4A2 SLC4A3
SLC4A9 for paralogs About GeneDecksing
|
Genomic Variants
for SLC4A9 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 5 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for SLC4A9 (139739787 - 139754722 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SLC4A9: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SLC4A9 |
|
Disorders
/ Diseases
for SLC4A9 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
SLC4A9 for disorders About GeneDecksing
OMIM gene information: 610207
OMIM disorders: --
2  diseases for SLC4A9: About MalaCardshidradenoma neuronitis
Export disorders for SLC4A9 gene to outside databases
|
Publications
for SLC4A9 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for SLC4A9 gene integrated from 9 sources:
(articles sorted by number of sources associating them with SLC4A9) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A novel sodium bicarbonate cotransporter-like gene in an ancient duplicated region: SLC4A9 at 5q31. (PubMed id 11305939)1, 2, 3, 9 Lipovich L.... King M.-C. (2001)
- Human BTR1, a new bicarbonate transporter superfamily member and human AE4 from kidney. (PubMed id 11302728)1, 2, 9 Parker M.D.... Tanner M.J.A. (2001)
- The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)2 Schmutz J.... Rubin E.M. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Na+:HCO3- cotransporters (NBC): expression and regulation in the kidney. (PubMed id 12027220)9 Soleimani M. (2002)
- Functional and molecular properties of Na+:HCO-3 cotransporters (NBC). (PubMed id 12847417)9 Soleimani M. (2003)
- Na+:HCO(3-) cotransporters (NBC): cloning and characterization. (PubMed id 11562789)9 Soleimani M. and Burnham C.E. (2001)
|
External Searches for SLC4A9 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing SLC4A9 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing SLC4A9 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SLC4A9 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for SLC4A9 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for SLC4A9 gene:
Search GeneIP for patents involving SLC4A9
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for SLC4A9 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for SLC4A9 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SLC4A9 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for SLC4A9 | | | OriGene Protein Over-expression Lysate for SLC4A9 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for SLC4A9 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SLC4A9 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SLC4A9 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for SLC4A9 | | OriGene Custom Protein Services for SLC4A9 | | | OriGene Custom Immunoassay Development | | |
| |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SLC4A9 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SLC4A9 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC4A9 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SLC4A9 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SLC4A9 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC4A9 |
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| |  |  |  |  | | | | |
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 | | | SLC4A9 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC4A9 |
|  |  |  | | | | Search ThermoFisher Antibodies for SLC4A9 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SLC4A9 |
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