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Aliases for SLC45A4 Gene

Aliases for SLC45A4 Gene

  • Solute Carrier Family 45 Member 4 2 3 5
  • Solute Carrier Family 45, Member 4 2
  • KIAA1126 4

External Ids for SLC45A4 Gene

Previous GeneCards Identifiers for SLC45A4 Gene

  • GC08M142287
  • GC08M137532
  • GC08M142218

Summaries for SLC45A4 Gene

GeneCards Summary for SLC45A4 Gene

SLC45A4 (Solute Carrier Family 45 Member 4) is a Protein Coding gene. An important paralog of this gene is SLC45A3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC45A4 Gene

Genomics for SLC45A4 Gene

Regulatory Elements for SLC45A4 Gene

Enhancers for SLC45A4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SLC45A4 on UCSC Golden Path with GeneCards custom track

Promoters for SLC45A4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLC45A4 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC45A4 Gene

Chromosome:
8
Start:
141,207,166 bp from pter
End:
141,308,310 bp from pter
Size:
101,145 bases
Orientation:
Minus strand

Genomic View for SLC45A4 Gene

Genes around SLC45A4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC45A4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC45A4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC45A4 Gene

Proteins for SLC45A4 Gene

  • Protein details for SLC45A4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5BKX6-S45A4_HUMAN
    Recommended name:
    Solute carrier family 45 member 4
    Protein Accession:
    Q5BKX6
    Secondary Accessions:
    • Q6ZRI2
    • Q9ULU3

    Protein attributes for SLC45A4 Gene

    Size:
    768 amino acids
    Molecular mass:
    83878 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH90891.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC45A4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC45A4 Gene

Proteomics data for SLC45A4 Gene at MOPED

Post-translational modifications for SLC45A4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SLC45A4 Gene

No data available for DME Specific Peptides for SLC45A4 Gene

Domains & Families for SLC45A4 Gene

Gene Families for SLC45A4 Gene

Protein Domains for SLC45A4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC45A4 Gene

Graphical View of Domain Structure for InterPro Entry

Q5BKX6

UniProtKB/Swiss-Prot:

S45A4_HUMAN :
  • Belongs to the glycoside-pentoside-hexuronide (GPH) cation symporter transporter (TC 2.A.2) family.
Family:
  • Belongs to the glycoside-pentoside-hexuronide (GPH) cation symporter transporter (TC 2.A.2) family.
genes like me logo Genes that share domains with SLC45A4: view

Function for SLC45A4 Gene

Phenotypes for SLC45A4 Gene

GenomeRNAi human phenotypes for SLC45A4:
genes like me logo Genes that share phenotypes with SLC45A4: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC45A4

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC45A4 Gene

Localization for SLC45A4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC45A4 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC45A4 Gene COMPARTMENTS Subcellular localization image for SLC45A4 gene
Compartment Confidence
plasma membrane 4

No data available for Gene Ontology (GO) - Cellular Components for SLC45A4 Gene

Pathways & Interactions for SLC45A4 Gene

SuperPathways for SLC45A4 Gene

No Data Available

Interacting Proteins for SLC45A4 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000024061%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000160827%0d%0a
Selected Interacting proteins: ENSP00000024061 for SLC45A4 Gene via STRING

Gene Ontology (GO) - Biological Process for SLC45A4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC45A4 Gene

Drugs & Compounds for SLC45A4 Gene

No Compound Related Data Available

Transcripts for SLC45A4 Gene

Unigene Clusters for SLC45A4 Gene

Solute carrier family 45, member 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC45A4 Gene

No ASD Table

Relevant External Links for SLC45A4 Gene

GeneLoc Exon Structure for
SLC45A4
ECgene alternative splicing isoforms for
SLC45A4

Expression for SLC45A4 Gene

mRNA expression in normal human tissues for SLC45A4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SLC45A4 Gene

This gene is overexpressed in Whole Blood (x7.9).

Protein differential expression in normal tissues from HIPED for SLC45A4 Gene

This gene is overexpressed in Pancreatic juice (52.0) and Placenta (17.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SLC45A4 Gene



SOURCE GeneReport for Unigene cluster for SLC45A4 Gene Hs.372492

genes like me logo Genes that share expression patterns with SLC45A4: view

Protein tissue co-expression partners for SLC45A4 Gene

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for SLC45A4 Gene

Orthologs for SLC45A4 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLC45A4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLC45A4 35
  • 84.09 (n)
  • 84.38 (a)
SLC45A4 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC45A4 35
  • 87.81 (n)
  • 89.61 (a)
SLC45A4 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc45a4 35
  • 84.62 (n)
  • 86.41 (a)
Slc45a4 16
Slc45a4 36
  • 77 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC45A4 35
  • 98.86 (n)
  • 99.21 (a)
SLC45A4 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc45a4 35
  • 84.49 (n)
  • 85.88 (a)
oppossum
(Monodelphis domestica)
Mammalia SLC45A4 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC45A4 36
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC45A4 35
  • 74.4 (n)
  • 80.45 (a)
SLC45A4 36
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLC45A4 36
  • 70 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc45a4 35
  • 73.67 (n)
  • 79.52 (a)
zebrafish
(Danio rerio)
Actinopterygii slc45a4 35
  • 62.27 (n)
  • 61.5 (a)
slc45a4 36
  • 52 (a)
OneToMany
SLC45A4 (1 of 2) 36
  • 53 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010854 35
  • 49.4 (n)
  • 38.37 (a)
fruit fly
(Drosophila melanogaster)
Insecta Slc45-1 35
  • 50 (n)
  • 37.62 (a)
CG41087 36
  • 33 (a)
OneToMany
Species with no ortholog for SLC45A4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC45A4 Gene

ENSEMBL:
Gene Tree for SLC45A4 (if available)
TreeFam:
Gene Tree for SLC45A4 (if available)

Paralogs for SLC45A4 Gene

Paralogs for SLC45A4 Gene

(2) SIMAP similar genes for SLC45A4 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with SLC45A4: view

Variants for SLC45A4 Gene

Sequence variations from dbSNP and Humsavar for SLC45A4 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs753778 - 141,218,810(-) CGAGC(C/T)GCACG reference, missense
rs3739238 - 141,212,346(-) ATCCC(A/G)ACGTG reference, missense
rs2043420 -- 141,226,419(-) GTGCC(A/G)CCCCT intron-variant
rs2043421 -- 141,226,363(-) AGAGC(A/G)CCCCA intron-variant
rs2043422 -- 141,226,238(-) AGTCC(C/T)GACGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC45A4 Gene

Variant ID Type Subtype PubMed ID
esv2737756 CNV Deletion 23290073
nsv831483 CNV Gain 17160897
dgv7890n71 CNV Loss 21882294
nsv891540 CNV Loss 21882294
nsv470239 CNV Loss 18288195
dgv7891n71 CNV Loss 21882294
dgv7892n71 CNV Loss 21882294
nsv516666 CNV Loss 19592680
nsv891549 CNV Loss 21882294
nsv6428 CNV Insertion 18451855
dgv7893n71 CNV Loss 21882294
nsv465955 CNV Loss 19166990

Variation tolerance for SLC45A4 Gene

Residual Variation Intolerance Score: 58.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.67; 45.98% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SLC45A4 Gene

Disorders for SLC45A4 Gene

Relevant External Links for SLC45A4

Genetic Association Database (GAD)
SLC45A4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC45A4

No disorders were found for SLC45A4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC45A4 Gene

Publications for SLC45A4 Gene

  1. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PMID: 10574461) Hirosawa M. … Ohara O. (DNA Res. 1999) 3

Products for SLC45A4 Gene

Sources for SLC45A4 Gene

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