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Aliases for SLC45A1 Gene

Aliases for SLC45A1 Gene

  • Solute Carrier Family 45 Member 1 2 3 4 5
  • Deleted In Neuroblastoma 5 Protein 3 4
  • H+/Sugar Symporter 2 3
  • PAST-A 3 4
  • DNB5 3 4
  • Proton-Associated Sugar Transporter A 3
  • Solute Carrier Family 45, Member 1 2
  • Deleted In Neuroblastoma 5 2
  • DNb-5 4

External Ids for SLC45A1 Gene

Previous HGNC Symbols for SLC45A1 Gene

  • DNB5

Previous GeneCards Identifiers for SLC45A1 Gene

  • GC01P008313
  • GC01P008300
  • GC01P007532
  • GC01P008377

Summaries for SLC45A1 Gene

Entrez Gene Summary for SLC45A1 Gene

  • This gene was isolated initially from a region on chromosome 1p that is frequently deleted in human neuroblastoma, although no causal relationship has since been demonstrated. The encoded protein belongs to the glycoside-pentoside-hexuronide cation symporter transporter family and may play a role in glucose uptake. [provided by RefSeq, Mar 2014]

GeneCards Summary for SLC45A1 Gene

SLC45A1 (Solute Carrier Family 45 Member 1) is a Protein Coding gene. Diseases associated with SLC45A1 include Neuroblastoma 5 and Neuroblastoma. GO annotations related to this gene include symporter activity. An important paralog of this gene is SLC45A4.

UniProtKB/Swiss-Prot for SLC45A1 Gene

  • Mediates glucose uptake along the pH gradient.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC45A1 Gene

Genomics for SLC45A1 Gene

Regulatory Elements for SLC45A1 Gene

Enhancers for SLC45A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F008292 1.1 ENCODE 16 -23.8 -23800 2.5 KLF1 ZIC2 NR2F2 ZFHX2 POLR2A NR2F6 ZNF600 EGR2 SLC45A1 RERE RNU6-991P
GH01F008010 1.1 FANTOM5 ENCODE 12.8 -307.6 -307595 0.3 PKNOX1 ARID4B DMAP1 ZNF48 THAP11 MIXL1 PAF1 KLF11 ZHX2 KAT8 SLC45A1 PARK7 TNFRSF9 ERRFI1 PER3 GC01P008012 ENSG00000200344 GC01M007982
GH01F008351 0.2 ENCODE 12.2 +33.8 33818 0.9 CTCF KLF1 TEAD4 INSM2 RAD21 ZFHX2 POLR2A SCRT2 ZNF143 SMC3 SLC45A1 PARK7 ENSG00000238290 ERRFI1 PIR31362 ENSG00000252254
GH01F008314 1.2 Ensembl ENCODE 11.9 -2.6 -2595 2.5 ARID4B ZNF48 ZNF2 SLC30A9 ZNF143 FOS DEK ZNF263 SP5 MIER2 SLC45A1 RERE RNU6-991P
GH01F008352 0.2 ENCODE 11.8 +35.2 35240 1.6 CTCF KLF1 PKNOX1 FEZF1 FOSL1 CTBP1 GATA3 POLR2A ZNF600 FOS RERE SLC45A1 ENSG00000238290 ERRFI1 PARK7 ENO1 PIR31362 ENSG00000252254
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SLC45A1 on UCSC Golden Path with GeneCards custom track

Promoters for SLC45A1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000530024 375 1200 PKNOX1 ATF1 RAD21 CREM EGR2 REST NR2F2 TFDP1 ZFP69B KLF16

Genomic Location for SLC45A1 Gene

Chromosome:
1
Start:
8,317,826 bp from pter
End:
8,344,167 bp from pter
Size:
26,342 bases
Orientation:
Plus strand

Genomic View for SLC45A1 Gene

Genes around SLC45A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC45A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC45A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC45A1 Gene

Proteins for SLC45A1 Gene

  • Protein details for SLC45A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2W3-S45A1_HUMAN
    Recommended name:
    Proton-associated sugar transporter A
    Protein Accession:
    Q9Y2W3
    Secondary Accessions:
    • Q5VY46
    • Q5VY49

    Protein attributes for SLC45A1 Gene

    Size:
    748 amino acids
    Molecular mass:
    80843 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD27583.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact.; Evidence={ECO:0000305}; Sequence=CAH70515.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for SLC45A1 Gene

Post-translational modifications for SLC45A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SLC45A1 Gene

No data available for DME Specific Peptides for SLC45A1 Gene

Domains & Families for SLC45A1 Gene

Gene Families for SLC45A1 Gene

Protein Domains for SLC45A1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC45A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y2W3

UniProtKB/Swiss-Prot:

S45A1_HUMAN :
  • Belongs to the glycoside-pentoside-hexuronide (GPH) cation symporter transporter (TC 2.A.2) family.
Family:
  • Belongs to the glycoside-pentoside-hexuronide (GPH) cation symporter transporter (TC 2.A.2) family.
genes like me logo Genes that share domains with SLC45A1: view

Function for SLC45A1 Gene

Molecular function for SLC45A1 Gene

UniProtKB/Swiss-Prot Function:
Mediates glucose uptake along the pH gradient.

Gene Ontology (GO) - Molecular Function for SLC45A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015293 symporter activity IEA --
genes like me logo Genes that share ontologies with SLC45A1: view

Phenotypes for SLC45A1 Gene

GenomeRNAi human phenotypes for SLC45A1:
genes like me logo Genes that share phenotypes with SLC45A1: view

Animal Model Products

miRNA for SLC45A1 Gene

miRTarBase miRNAs that target SLC45A1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC45A1 Gene

Localization for SLC45A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC45A1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC45A1 Gene COMPARTMENTS Subcellular localization image for SLC45A1 gene
Compartment Confidence
plasma membrane 3
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for SLC45A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC45A1: view

Pathways & Interactions for SLC45A1 Gene

SuperPathways for SLC45A1 Gene

No Data Available

Interacting Proteins for SLC45A1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000289877%0d%0a9606.ENSP00000326031%0d%0a
Selected Interacting proteins: ENSP00000289877 Q9Y2W3-S45A1_HUMAN for SLC45A1 Gene via STRING IID

Gene Ontology (GO) - Biological Process for SLC45A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008643 carbohydrate transport IEA --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC45A1: view

No data available for Pathways by source and SIGNOR curated interactions for SLC45A1 Gene

Transcripts for SLC45A1 Gene

Unigene Clusters for SLC45A1 Gene

Solute carrier family 45, member 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC45A1 Gene

No ASD Table

Relevant External Links for SLC45A1 Gene

GeneLoc Exon Structure for
SLC45A1
ECgene alternative splicing isoforms for
SLC45A1

Expression for SLC45A1 Gene

mRNA expression in normal human tissues for SLC45A1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SLC45A1 Gene:

SLC45A1

SOURCE GeneReport for Unigene cluster for SLC45A1 Gene:

Hs.463036

mRNA Expression by UniProt/SwissProt for SLC45A1 Gene:

Q9Y2W3-S45A1_HUMAN
Tissue specificity: Expressed in adult heart, brain, muscle and kidney, with very strong expression in brain. Also expressed in fetal brain, kidney and lung.
genes like me logo Genes that share expression patterns with SLC45A1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for SLC45A1 Gene

Orthologs for SLC45A1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLC45A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC45A1 34 35
  • 99.24 (n)
dog
(Canis familiaris)
Mammalia SLC45A1 34 35
  • 87.91 (n)
cow
(Bos Taurus)
Mammalia SLC45A1 34 35
  • 87.39 (n)
rat
(Rattus norvegicus)
Mammalia Slc45a1 34
  • 85.77 (n)
mouse
(Mus musculus)
Mammalia Slc45a1 34 16 35
  • 85.45 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SLC45A1 35
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLC45A1 35
  • 75 (a)
OneToOne
chicken
(Gallus gallus)
Aves -- 35
  • 79 (a)
OneToMany
-- 35
  • 78 (a)
OneToMany
SLC45A1 34
  • 72.56 (n)
lizard
(Anolis carolinensis)
Reptilia SLC45A1 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc45a1 34
  • 67.89 (n)
Str.15583 34
zebrafish
(Danio rerio)
Actinopterygii slc45a1 35
  • 64 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000137 34
  • 54.75 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG41087 35
  • 34 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 40 (a)
OneToOne
Species where no ortholog for SLC45A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC45A1 Gene

ENSEMBL:
Gene Tree for SLC45A1 (if available)
TreeFam:
Gene Tree for SLC45A1 (if available)

Paralogs for SLC45A1 Gene

Paralogs for SLC45A1 Gene

(1) SIMAP similar genes for SLC45A1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SLC45A1: view

Variants for SLC45A1 Gene

Sequence variations from dbSNP and Humsavar for SLC45A1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10449318 -- 8,329,834(+) GGGGT(C/T)GGCCC intron-variant
rs1055236 -- 8,344,033(+) GACTC(C/T)GGACA utr-variant-3-prime
rs1058619 -- 8,330,435(-) ACGGG(C/T)GGGGA reference, synonymous-codon
rs10779701 -- 8,319,566(+) GATGA(A/G)TGGAT intron-variant
rs10864349 -- 8,332,550(+) TCTGT(C/T)GCCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC45A1 Gene

Variant ID Type Subtype PubMed ID
esv1250756 CNV insertion 17803354
esv2601359 CNV insertion 19546169
nsv1012977 CNV loss 25217958
nsv1743 CNV insertion 18451855
nsv512716 CNV insertion 21212237
nsv516827 CNV loss 19592680

Variation tolerance for SLC45A1 Gene

Residual Variation Intolerance Score: 10.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.86; 34.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC45A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC45A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC45A1 Gene

Disorders for SLC45A1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SLC45A1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
neuroblastoma 5
  • neuroblastoma, susceptibility to, 5
neuroblastoma
  • neuroblastoma 1
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SLC45A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC45A1
genes like me logo Genes that share disorders with SLC45A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC45A1 Gene

Publications for SLC45A1 Gene

  1. Identification and characterization of novel genes located at the t(1;15)(p36.2;q24) translocation breakpoint in the neuroblastoma cell line NGP. (PMID: 10729226) Amler L.C. … Hampton G.M. (Genomics 2000) 2 3 4 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  3. Genome-wide association study of plasma N6 polyunsaturated fatty acids within the cohorts for heart and aging research in genomic epidemiology consortium. (PMID: 24823311) Guan W. … Steffen L.M. (Circ Cardiovasc Genet 2014) 3 64
  4. Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. (PMID: 23453885) (Lancet 2013) 3 64
  5. A genome-wide scan for breast cancer risk haplotypes among African American women. (PMID: 23468962) Song C. … Stram D.O. (PLoS ONE 2013) 3 64

Products for SLC45A1 Gene

Sources for SLC45A1 Gene

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