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Aliases for SLC43A3 Gene

Aliases for SLC43A3 Gene

  • Solute Carrier Family 43 Member 3 2 3 5
  • Likely Ortholog Of Mouse Embryonic Epithelial Gene 1 2 3
  • Solute Carrier Family 43, Member 3 2
  • Protein FOAP-13 4
  • FOAP-13 3
  • PRO1659 3
  • SEEEG-1 3
  • EEG1 3

External Ids for SLC43A3 Gene

Previous GeneCards Identifiers for SLC43A3 Gene

  • GC11M056950
  • GC11M056931
  • GC11M057174
  • GC11M053523

Summaries for SLC43A3 Gene

GeneCards Summary for SLC43A3 Gene

SLC43A3 (Solute Carrier Family 43 Member 3) is a Protein Coding gene. An important paralog of this gene is SLC43A2.

UniProtKB/Swiss-Prot for SLC43A3 Gene

  • Putative transporter.

Additional gene information for SLC43A3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC43A3 Gene

Genomics for SLC43A3 Gene

GeneHancer (GH) Regulatory Elements for SLC43A3 Gene

Promoters and enhancers for SLC43A3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I057423 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +1.5 1478 4.9 HDGF FOXA2 PKNOX1 SMAD1 ARNT IRF4 YY1 POLR2B ZNF766 E2F8 SLC43A3 SSRP1 CTNND1 TIMM10 PRG2 RTN4RL2 SMTNL1 APLNR ENSG00000254979
GH11I057405 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 23.7 +20.8 20814 2.4 PKNOX1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 JUNB REST GC11M057408 SLC43A3 P2RX3 RN7SKP259 RTN4RL2 SSRP1 PRG2 TIMM10 UBE2L6 ZDHHC5
GH11I057529 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.5 -103.1 -103109 2.5 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 PIR39300 PIR40820 TIMM10 SSRP1 CLP1 MIR130A UBE2L6 RPS4XP13 ENSG00000254602 YPEL4
GH11I057496 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 10.6 -72.3 -72349 6.7 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS SP3 TIMM10 RTN4RL2 RN7SKP259 MIR130A SLC43A3 ENSG00000254979 P2RX3 SSRP1 ENSG00000254602 CLP1
GH11I057790 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -365.0 -365003 3.3 HDGF PKNOX1 ATF1 SMAD1 BATF IRF4 ZNF143 ETV6 ATF7 BCLAF1 PIR53177 MED19 SLC43A3 SMTNL1 UBE2L6 ZDHHC5 CLP1 CTNND1 ENSG00000254732 GC11P057856
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC43A3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SLC43A3 gene promoter:

Genomic Locations for SLC43A3 Gene

Genomic Locations for SLC43A3 Gene
chr11:57,406,954-57,427,580
(GRCh38/hg38)
Size:
20,627 bases
Orientation:
Minus strand
chr11:57,174,427-57,195,053
(GRCh37/hg19)

Genomic View for SLC43A3 Gene

Genes around SLC43A3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC43A3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC43A3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC43A3 Gene

Proteins for SLC43A3 Gene

  • Protein details for SLC43A3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBI5-S43A3_HUMAN
    Recommended name:
    Solute carrier family 43 member 3
    Protein Accession:
    Q8NBI5
    Secondary Accessions:
    • B4DNR8
    • E7EQD2
    • Q9NSS4

    Protein attributes for SLC43A3 Gene

    Size:
    491 amino acids
    Molecular mass:
    54529 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SLC43A3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC43A3 Gene

Post-translational modifications for SLC43A3 Gene

  • Ubiquitination at posLast=249249 and posLast=255255
  • Glycosylation at posLast=5656, posLast=220220, and isoforms=2229

No data available for DME Specific Peptides for SLC43A3 Gene

Domains & Families for SLC43A3 Gene

Gene Families for SLC43A3 Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Transporters

Protein Domains for SLC43A3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC43A3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NBI5

UniProtKB/Swiss-Prot:

S43A3_HUMAN :
  • Belongs to the SLC43A transporter (TC 2.A.1.44) family.
Family:
  • Belongs to the SLC43A transporter (TC 2.A.1.44) family.
genes like me logo Genes that share domains with SLC43A3: view

Function for SLC43A3 Gene

Molecular function for SLC43A3 Gene

UniProtKB/Swiss-Prot Function:
Putative transporter.

Phenotypes From GWAS Catalog for SLC43A3 Gene

Gene Ontology (GO) - Molecular Function for SLC43A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with SLC43A3: view
genes like me logo Genes that share phenotypes with SLC43A3: view

Animal Model Products

CRISPR Products

miRNA for SLC43A3 Gene

miRTarBase miRNAs that target SLC43A3

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC43A3 Gene

Localization for SLC43A3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC43A3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC43A3 gene
Compartment Confidence
plasma membrane 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Plasma membrane (2)
  • Vesicles (2)
  • Nucleoplasm (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SLC43A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC43A3: view

Pathways & Interactions for SLC43A3 Gene

SuperPathways for SLC43A3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC43A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC43A3: view

No data available for Pathways by source and SIGNOR curated interactions for SLC43A3 Gene

Drugs & Compounds for SLC43A3 Gene

No Compound Related Data Available

Transcripts for SLC43A3 Gene

Unigene Clusters for SLC43A3 Gene

Solute carrier family 43, member 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC43A3 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13a · 13b ^
SP1: - - - - - - - -
SP2: - - - - -
SP3: - - - - - - -
SP4: -
SP5:
SP6: - - - -
SP7: - - - - - -
SP8: -
SP9: - - -
SP10: - - - - - - -
SP11: - - - -
SP12: - - - - - - - -
SP13: - - - - -
SP14: - - - - - -
SP15: - - - - -
SP16: - - - - - -
SP17: - - -
SP18: - - - - - -

ExUns: 14a · 14b · 14c · 14d ^ 15 ^ 16 ^ 17 ^ 18 ^ 19
SP1: -
SP2: -
SP3:
SP4:
SP5: -
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for SLC43A3 Gene

GeneLoc Exon Structure for
SLC43A3
ECgene alternative splicing isoforms for
SLC43A3

Expression for SLC43A3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC43A3 Gene

mRNA differential expression in normal tissues according to GTEx for SLC43A3 Gene

This gene is overexpressed in Liver (x5.4).

Protein differential expression in normal tissues from HIPED for SLC43A3 Gene

This gene is overexpressed in Urine (31.6) and Breast (23.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SLC43A3 Gene



NURSA nuclear receptor signaling pathways regulating expression of SLC43A3 Gene:

SLC43A3

SOURCE GeneReport for Unigene cluster for SLC43A3 Gene:

Hs.99962

mRNA Expression by UniProt/SwissProt for SLC43A3 Gene:

Q8NBI5-S43A3_HUMAN
Tissue specificity: Highly expressed in macrophages.

Evidence on tissue expression from TISSUES for SLC43A3 Gene

  • Lung(4.4)
  • Kidney(4.2)
  • Nervous system(2.4)
  • Liver(2.3)
genes like me logo Genes that share expression patterns with SLC43A3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC43A3 Gene

Orthologs for SLC43A3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC43A3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC43A3 33 34
  • 95.93 (n)
dog
(Canis familiaris)
Mammalia SLC43A3 33 34
  • 84.01 (n)
cow
(Bos Taurus)
Mammalia SLC43A3 33 34
  • 82.17 (n)
mouse
(Mus musculus)
Mammalia Slc43a3 33 16 34
  • 79.49 (n)
rat
(Rattus norvegicus)
Mammalia Slc43a3 33
  • 79.18 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SLC43A3 34
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLC43A3 34
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC43A3 33 34
  • 65.96 (n)
lizard
(Anolis carolinensis)
Reptilia SLC43A3 34
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii slc43a3b 33 34
  • 61.12 (n)
slc43a3a 34
  • 52 (a)
OneToMany
Dr.26648 33
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YMR221C 33
  • 44.85 (n)
-- 34
  • 19 (a)
OneToMany
FMP42 36
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C07040g 33
  • 40.14 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU10987 33
  • 44.44 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 33 (a)
OneToMany
-- 34
  • 31 (a)
OneToMany
-- 34
  • 30 (a)
OneToMany
-- 34
  • 29 (a)
OneToMany
-- 34
  • 27 (a)
OneToMany
Species where no ortholog for SLC43A3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC43A3 Gene

ENSEMBL:
Gene Tree for SLC43A3 (if available)
TreeFam:
Gene Tree for SLC43A3 (if available)

Paralogs for SLC43A3 Gene

Variants for SLC43A3 Gene

Sequence variations from dbSNP and Humsavar for SLC43A3 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000130726 -- 57,412,910(-) T/C intron_variant
rs1000196079 -- 57,428,092(-) A/C/G upstream_transcript_variant
rs1000403715 -- 57,422,777(-) G/C intron_variant
rs1000732768 -- 57,411,382(-) C/T intron_variant
rs1000848484 -- 57,429,448(-) G/A upstream_transcript_variant

Variation tolerance for SLC43A3 Gene

Residual Variation Intolerance Score: 59.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.30; 41.18% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SLC43A3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC43A3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SLC43A3 Gene

Disorders for SLC43A3 Gene

Additional Disease Information for SLC43A3

No disorders were found for SLC43A3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC43A3 Gene

Publications for SLC43A3 Gene

  1. A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PMID: 22412388) Kenny EE … Peter I (PLoS genetics 2012) 3 44 58
  2. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3 4 58
  3. EEG1, a putative transporter expressed during epithelial organogenesis: comparison with embryonic transporter expression during nephrogenesis. (PMID: 11704567) Stuart RO … Nigam SK (American journal of physiology. Renal physiology 2001) 2 3 58
  4. Human eosinophil major basic protein, a mediator of allergic inflammation, is expressed by alternative splicing from two promoters. (PMID: 7531438) Li MS … Spry CJ (The Biochemical journal 1995) 2 3 58
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58

Products for SLC43A3 Gene

Sources for SLC43A3 Gene

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