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Aliases for SLC41A2 Gene

Aliases for SLC41A2 Gene

  • Solute Carrier Family 41 (Magnesium Transporter), Member 2 2 3
  • Solute Carrier Family 41, Member 2 2 3
  • SLC41A1-Like 1 3
  • SLC41A1-L1 3

External Ids for SLC41A2 Gene

Previous GeneCards Identifiers for SLC41A2 Gene

  • GC12M103701
  • GC12M103702
  • GC12M105197
  • GC12M102256

Summaries for SLC41A2 Gene

GeneCards Summary for SLC41A2 Gene

SLC41A2 (Solute Carrier Family 41 (Magnesium Transporter), Member 2) is a Protein Coding gene. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds and Metal ion SLC transporters. GO annotations related to this gene include cation transmembrane transporter activity. An important paralog of this gene is SLC41A1.

UniProtKB/Swiss-Prot for SLC41A2 Gene

  • Acts as a plasma-membrane magnesium transporter.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC41A2 Gene

Genomics for SLC41A2 Gene

Regulatory Elements for SLC41A2 Gene

Genomic Location for SLC41A2 Gene

Chromosome:
12
Start:
104,802,553 bp from pter
End:
104,958,744 bp from pter
Size:
156,192 bases
Orientation:
Minus strand

Genomic View for SLC41A2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLC41A2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC41A2 Gene

Proteins for SLC41A2 Gene

  • Protein details for SLC41A2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JW4-S41A2_HUMAN
    Recommended name:
    Solute carrier family 41 member 2
    Protein Accession:
    Q96JW4
    Secondary Accessions:
    • Q3KP68
    • Q9H0E5

    Protein attributes for SLC41A2 Gene

    Size:
    573 amino acids
    Molecular mass:
    62473 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH36734.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI06872.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAI06873.2; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55402.1; Type=Frameshift; Positions=69, 101, 103; Evidence={ECO:0000305}; Sequence=CAB66762.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for SLC41A2 Gene

Proteomics data for SLC41A2 Gene at MOPED

Post-translational modifications for SLC41A2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for SLC41A2 Gene

Domains & Families for SLC41A2 Gene

Gene Families for SLC41A2 Gene

Protein Domains for SLC41A2 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC41A2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96JW4

UniProtKB/Swiss-Prot:

S41A2_HUMAN :
  • Belongs to the SLC41A transporter family.
Family:
  • Belongs to the SLC41A transporter family.
genes like me logo Genes that share domains with SLC41A2: view

Function for SLC41A2 Gene

Molecular function for SLC41A2 Gene

UniProtKB/Swiss-Prot Function:
Acts as a plasma-membrane magnesium transporter.

Gene Ontology (GO) - Molecular Function for SLC41A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008324 cation transmembrane transporter activity IEA --
genes like me logo Genes that share ontologies with SLC41A2: view

Phenotypes for SLC41A2 Gene

GenomeRNAi human phenotypes for SLC41A2:
genes like me logo Genes that share phenotypes with SLC41A2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SLC41A2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC41A2 Gene

Localization for SLC41A2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC41A2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC41A2 Gene COMPARTMENTS Subcellular localization image for SLC41A2 gene
Compartment Confidence
plasma membrane 4

Gene Ontology (GO) - Cellular Components for SLC41A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC41A2: view

Pathways & Interactions for SLC41A2 Gene

genes like me logo Genes that share pathways with SLC41A2: view

Interacting Proteins for SLC41A2 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000258538%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000404220%0d%0a
Selected Interacting proteins: ENSP00000258538 Q96JW4-S41A2_HUMAN for SLC41A2 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for SLC41A2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006812 cation transport --
GO:0055085 transmembrane transport TAS --
GO:0098655 cation transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC41A2: view

No data available for SIGNOR curated interactions for SLC41A2 Gene

Drugs & Compounds for SLC41A2 Gene

(1) Drugs for SLC41A2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Magnesium Nutra 0
genes like me logo Genes that share compounds with SLC41A2: view

Transcripts for SLC41A2 Gene

Unigene Clusters for SLC41A2 Gene

Solute carrier family 41, member 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SLC41A2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC41A2 Gene

No ASD Table

Relevant External Links for SLC41A2 Gene

GeneLoc Exon Structure for
SLC41A2
ECgene alternative splicing isoforms for
SLC41A2

Expression for SLC41A2 Gene

mRNA expression in normal human tissues for SLC41A2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SLC41A2 Gene

This gene is overexpressed in Liver (x7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SLC41A2 Gene



SOURCE GeneReport for Unigene cluster for SLC41A2 Gene Hs.577463

genes like me logo Genes that share expression patterns with SLC41A2: view

Protein tissue co-expression partners for SLC41A2 Gene

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SLC41A2 Gene

Orthologs for SLC41A2 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLC41A2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLC41A2 35
  • 91.97 (n)
  • 94.94 (a)
SLC41A2 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC41A2 35
  • 91.51 (n)
  • 93.89 (a)
SLC41A2 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc41a2 35
  • 84.03 (n)
  • 91.26 (a)
Slc41a2 16
Slc41a2 36
  • 91 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC41A2 35
  • 99.71 (n)
  • 99.83 (a)
SLC41A2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc41a2 35
  • 83.03 (n)
  • 90.88 (a)
oppossum
(Monodelphis domestica)
Mammalia SLC41A2 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC41A2 36
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC41A2 35
  • 79.87 (n)
  • 84.82 (a)
SLC41A2 36
  • 85 (a)
OneToMany
SLC41A2 36
  • 81 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SLC41A2 36
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc41a2 35
  • 74.12 (n)
  • 81.33 (a)
Str.4263 35
zebrafish
(Danio rerio)
Actinopterygii LOC566242 35
  • 66.27 (n)
  • 74.07 (a)
SLC41A2 (2 of 2) 36
  • 59 (a)
OneToMany
slc41a2b 36
  • 68 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000663 35
  • 48.28 (n)
  • 40.34 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG33181 35
  • 48.48 (n)
  • 44.06 (a)
CG33181 36
  • 30 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea K07H8.2 36
  • 42 (a)
ManyToMany
ZK1053.6 36
  • 24 (a)
ManyToMany
ZK185.2 36
  • 34 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 54 (a)
OneToMany
Species with no ortholog for SLC41A2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC41A2 Gene

ENSEMBL:
Gene Tree for SLC41A2 (if available)
TreeFam:
Gene Tree for SLC41A2 (if available)

Paralogs for SLC41A2 Gene

Paralogs for SLC41A2 Gene

(2) SIMAP similar genes for SLC41A2 Gene using alignment to 9 proteins:

Pseudogenes.org Pseudogenes for SLC41A2 Gene

genes like me logo Genes that share paralogs with SLC41A2: view

Variants for SLC41A2 Gene

Sequence variations from dbSNP and Humsavar for SLC41A2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs2245695 -- 104,939,512(+) AATTG(C/T)TTATT intron-variant
rs2245696 -- 104,939,484(+) aggca(C/T)gagcc intron-variant
rs2248012 -- 104,810,104(-) GATAA(C/T)CTTTG intron-variant
rs2248978 -- 104,934,557(+) AATCA(C/T)GGCTT intron-variant
rs2248986 -- 104,934,313(+) TAGCA(C/T)AGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC41A2 Gene

Variant ID Type Subtype PubMed ID
nsv899495 CNV Gain 21882294
nsv899496 CNV Gain 21882294
nsv899497 CNV Loss 21882294
nsv899498 CNV Gain 21882294
nsv832505 CNV Gain 17160897
esv269511 CNV Insertion 20981092

Variation tolerance for SLC41A2 Gene

Residual Variation Intolerance Score: 16.55% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.21; 39.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC41A2 Gene

HapMap Linkage Disequilibrium report
SLC41A2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC41A2 Gene

Disorders for SLC41A2 Gene

Relevant External Links for SLC41A2

Genetic Association Database (GAD)
SLC41A2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC41A2
genes like me logo Genes that share disorders with SLC41A2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC41A2 Gene

Publications for SLC41A2 Gene

  1. SLC41A2 encodes a plasma-membrane Mg2+ transporter. (PMID: 16984228) Sahni J. … Scharenberg A.M. (Biochem. J. 2007) 23 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 67
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 67
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67

Products for SLC41A2 Gene

Sources for SLC41A2 Gene

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