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Aliases for SLC39A12-AS1 Gene

Subcategory (RNA class) for SLC39A12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC39A12-AS1 Gene

  • SLC39A12 Antisense RNA 1 2 3 5

External Ids for SLC39A12-AS1 Gene

Previous GeneCards Identifiers for SLC39A12-AS1 Gene

  • GC10M018291

Summaries for SLC39A12-AS1 Gene

GeneCards Summary for SLC39A12-AS1 Gene

SLC39A12-AS1 (SLC39A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC39A12-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC39A12-AS1 Gene

Genomics for SLC39A12-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC39A12-AS1 Gene

Promoters and enhancers for SLC39A12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I018139 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.7 -130.5 -130536 2.7 PKNOX1 MZF1 ZNF76 SIN3A GLI4 ZEB1 ZNF335 GLIS2 ZNF280D SP3 CACNB2 SLC39A12-AS1 ENSG00000235020
GH10I018158 Enhancer 1 Ensembl ENCODE dbSUPER 9.2 -148.7 -148706 1.4 STAT1 PKNOX1 CEBPB EP300 BRCA1 ZNF341 STAT3 TCF7L2 SLC39A12-AS1 CACNB2 ENSG00000235020
GH10I018144 Enhancer 0.9 Ensembl ENCODE dbSUPER 8.8 -134.8 -134760 1.6 SCRT1 POLR2A ZBTB21 ZNF629 SCRT2 ATF2 ZBTB17 SLC39A12-AS1 CACNB2 ENSG00000235020
GH10I018163 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 7.8 -154.0 -153999 2.2 FOS SP7 CACNB2 SLC39A12-AS1 ENSG00000235020
GH10I018178 Enhancer 0.9 Ensembl ENCODE dbSUPER 4.9 -169.3 -169344 2.7 RFX1 PRDM6 POLR2A RXRA FEZF1 REST PRDM4 CACNB2 SLC39A12-AS1 ENSG00000235020
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC39A12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC39A12-AS1 Gene

Genomic Locations for SLC39A12-AS1 Gene
chr10:18,001,786-18,010,562
(GRCh38/hg38)
Size:
8,777 bases
Orientation:
Minus strand
chr10:18,290,715-18,299,491
(GRCh37/hg19)

Genomic View for SLC39A12-AS1 Gene

Genes around SLC39A12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC39A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC39A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC39A12-AS1 Gene

Proteins for SLC39A12-AS1 Gene

Post-translational modifications for SLC39A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC39A12-AS1 Gene

Domains & Families for SLC39A12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC39A12-AS1 Gene

Function for SLC39A12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC39A12-AS1 Gene

Localization for SLC39A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC39A12-AS1 Gene

Pathways & Interactions for SLC39A12-AS1 Gene

SuperPathways for SLC39A12-AS1 Gene

No Data Available

Interacting Proteins for SLC39A12-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC39A12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC39A12-AS1 Gene

Drugs & Compounds for SLC39A12-AS1 Gene

No Compound Related Data Available

Transcripts for SLC39A12-AS1 Gene

mRNA/cDNA for SLC39A12-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC39A12-AS1 Gene

No ASD Table

Relevant External Links for SLC39A12-AS1 Gene

GeneLoc Exon Structure for
SLC39A12-AS1
ECgene alternative splicing isoforms for
SLC39A12-AS1

Expression for SLC39A12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC39A12-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC39A12-AS1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x6.7), Brain - Amygdala (x6.3), Brain - Putamen (basal ganglia) (x6.2), Brain - Frontal Cortex (BA9) (x6.1), Brain - Hippocampus (x6.0), Brain - Cortex (x5.6), and Brain - Nucleus accumbens (basal ganglia) (x4.1).
genes like me logo Genes that share expression patterns with SLC39A12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC39A12-AS1 Gene

Orthologs for SLC39A12-AS1 Gene

Evolution for SLC39A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC39A12-AS1 (if available)
TreeFam:
Gene Tree for SLC39A12-AS1 (if available)

No data available for Orthologs for SLC39A12-AS1 Gene

Paralogs for SLC39A12-AS1 Gene

No data available for Paralogs for SLC39A12-AS1 Gene

Variants for SLC39A12-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC39A12-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000679663 -- 18,004,560(-) C/A intron_variant
rs1000818498 -- 18,004,847(-) G/A/T intron_variant
rs1000831232 -- 18,002,111(-) G/C non_coding_transcript_variant
rs1000860979 -- 18,006,076(-) C/G intron_variant
rs1000893859 -- 18,006,465(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC39A12-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1039655 CNV loss 25217958

Additional Variant Information for SLC39A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC39A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC39A12-AS1 Gene

Disorders for SLC39A12-AS1 Gene

Additional Disease Information for SLC39A12-AS1

No disorders were found for SLC39A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC39A12-AS1 Gene

Publications for SLC39A12-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SLC39A12-AS1 Gene

Sources for SLC39A12-AS1 Gene

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