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Aliases for SLC39A12-AS1 Gene

Subcategory (RNA class) for SLC39A12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC39A12-AS1 Gene

  • SLC39A12 Antisense RNA 1 2 3 5

External Ids for SLC39A12-AS1 Gene

Previous GeneCards Identifiers for SLC39A12-AS1 Gene

  • GC10M018291

Summaries for SLC39A12-AS1 Gene

GeneCards Summary for SLC39A12-AS1 Gene

SLC39A12-AS1 (SLC39A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC39A12-AS1 Gene

Genomics for SLC39A12-AS1 Gene

Regulatory Elements for SLC39A12-AS1 Gene

Enhancers for SLC39A12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F018158 1.2 Ensembl ENCODE 9.1 -148.7 -148706 1.4 PKNOX1 STAT1 CEBPB EP300 BRCA1 ZNF341 STAT3 TCF7L2 SLC39A12-AS1 CACNB2 ENSG00000235020
GH10F018144 0.6 ENCODE 8.8 -134.8 -134761 1.6 ZNF263 SCRT1 POLR2A SCRT2 ATF2 SLC39A12-AS1 CACNB2 ENSG00000235020
GH10F018163 1.1 FANTOM5 Ensembl ENCODE 7.8 -154.0 -154000 2.2 FOS MAFK SP7 CACNB2 SLC39A12-AS1 ENSG00000235020
GH10F018139 0.9 FANTOM5 ENCODE 5.7 -130.5 -130537 2.7 PKNOX1 ZNF76 GLI4 ZEB1 GLIS2 FOS ZNF280D SP3 ZEB2 ZNF341 SLC39A12-AS1 CACNB2 ENSG00000235020
GH10F018178 1.3 Ensembl ENCODE 4.9 -169.3 -169345 2.7 MIER1 FEZF1 REST CACNB2 SLC39A12-AS1 ENSG00000235020
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SLC39A12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC39A12-AS1 Gene

Chromosome:
10
Start:
18,001,786 bp from pter
End:
18,010,562 bp from pter
Size:
8,777 bases
Orientation:
Minus strand

Genomic View for SLC39A12-AS1 Gene

Genes around SLC39A12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC39A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC39A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC39A12-AS1 Gene

Proteins for SLC39A12-AS1 Gene

Post-translational modifications for SLC39A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC39A12-AS1 Gene

Domains & Families for SLC39A12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC39A12-AS1 Gene

Function for SLC39A12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC39A12-AS1 Gene

Localization for SLC39A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SLC39A12-AS1 Gene

Pathways & Interactions for SLC39A12-AS1 Gene

SuperPathways for SLC39A12-AS1 Gene

No Data Available

Interacting Proteins for SLC39A12-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC39A12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC39A12-AS1 Gene

Transcripts for SLC39A12-AS1 Gene

mRNA/cDNA for SLC39A12-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC39A12-AS1 Gene

No ASD Table

Relevant External Links for SLC39A12-AS1 Gene

GeneLoc Exon Structure for
SLC39A12-AS1
ECgene alternative splicing isoforms for
SLC39A12-AS1

Expression for SLC39A12-AS1 Gene

mRNA expression in normal human tissues for SLC39A12-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC39A12-AS1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x6.7), Brain - Amygdala (x6.3), Brain - Putamen (basal ganglia) (x6.2), Brain - Frontal Cortex (BA9) (x6.1), Brain - Hippocampus (x6.0), Brain - Cortex (x5.6), and Brain - Nucleus accumbens (basal ganglia) (x4.1).
genes like me logo Genes that share expression patterns with SLC39A12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC39A12-AS1 Gene

Orthologs for SLC39A12-AS1 Gene

Evolution for SLC39A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC39A12-AS1 (if available)
TreeFam:
Gene Tree for SLC39A12-AS1 (if available)

No data available for Orthologs for SLC39A12-AS1 Gene

Paralogs for SLC39A12-AS1 Gene

No data available for Paralogs for SLC39A12-AS1 Gene

Variants for SLC39A12-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC39A12-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs11012030 -- 18,003,106(+) AGTGC(A/G)TTACT intron-variant, nc-transcript-variant
rs11012036 -- 18,004,524(+) TCTCA(A/G)AGTAA intron-variant
rs11012037 -- 18,004,573(+) TTTCC(A/G)GATGT intron-variant
rs111964090 -- 18,008,412(+) AAACA(A/C)GCTTA intron-variant
rs112483008 -- 18,006,746(+) CCCTG(C/T)CAGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC39A12-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1039655 CNV loss 25217958

Relevant External Links for SLC39A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC39A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC39A12-AS1 Gene

Disorders for SLC39A12-AS1 Gene

Relevant External Links for SLC39A12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC39A12-AS1

No disorders were found for SLC39A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC39A12-AS1 Gene

Publications for SLC39A12-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SLC39A12-AS1 Gene

Sources for SLC39A12-AS1 Gene

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