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Aliases for SLC39A11 Gene

Aliases for SLC39A11 Gene

  • Solute Carrier Family 39 Member 11 2 3 4 5
  • Zrt- And Irt-Like Protein 11 3 4
  • C17orf26 3 4
  • ZIP-11 3 4
  • ZIP11 3 4
  • Solute Carrier Family 39 (Metal Ion Transporter), Member 11 3
  • Chromosome 17 Open Reading Frame 26 2
  • Solute Carrier Family 39, Member 11 2
  • Zinc Transporter ZIP11 3

External Ids for SLC39A11 Gene

Previous HGNC Symbols for SLC39A11 Gene

  • C17orf26

Previous GeneCards Identifiers for SLC39A11 Gene

  • GC17M071239
  • GC17M068153
  • GC17M070644
  • GC17M066033

Summaries for SLC39A11 Gene

GeneCards Summary for SLC39A11 Gene

SLC39A11 (Solute Carrier Family 39 Member 11) is a Protein Coding gene. GO annotations related to this gene include metal ion transmembrane transporter activity.

UniProtKB/Swiss-Prot for SLC39A11 Gene

  • Functions as a cellular zinc transporter.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC39A11 Gene

Genomics for SLC39A11 Gene

Regulatory Elements for SLC39A11 Gene

Enhancers for SLC39A11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F073066 1.3 FANTOM5 Ensembl ENCODE 22 +24.1 24117 3.2 ELF3 TBP PKNOX1 ARID4B FEZF1 BMI1 ZNF48 ZSCAN9 RAD21 RARA SLC39A11 CPSF4L ATG12P1
GH17F073064 0.4 Ensembl 12.1 +28.2 28214 1.0 OSR2 CTCF MAFG NFE2 EMSY ZNF18 SLC39A11 GC17M073068 ENSG00000264196
GH17F073132 0.6 Ensembl ENCODE 11.8 -39.8 -39787 0.6 MTA2 BCL11A IKZF1 SPI1 SLC39A11 SSTR2 GC17M073164
GH17F073134 1.3 FANTOM5 Ensembl 11.8 -41.7 -41695 0.8 CTCF CBX3 RAD51 IKZF1 MAX ELF1 SLC39A11 SSTR2 GC17M073164
GH17F073012 0.8 Ensembl ENCODE 11.5 +79.1 79066 1.4 CTCF KLF1 PKNOX1 ZFP64 ZNF266 KLF17 ZNF140 ZIC2 ZNF2 ZNF121 SLC39A11 GC17M073068 ENSG00000264196
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SLC39A11 on UCSC Golden Path with GeneCards custom track

Promoters for SLC39A11 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001352717 314 2001 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A ZNF2 ZNF143 KLF13

Genomic Location for SLC39A11 Gene

Chromosome:
17
Start:
72,645,946 bp from pter
End:
73,092,714 bp from pter
Size:
446,769 bases
Orientation:
Minus strand

Genomic View for SLC39A11 Gene

Genes around SLC39A11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC39A11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC39A11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC39A11 Gene

Proteins for SLC39A11 Gene

  • Protein details for SLC39A11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1S5-S39AB_HUMAN
    Recommended name:
    Zinc transporter ZIP11
    Protein Accession:
    Q8N1S5
    Secondary Accessions:
    • B2R8H7
    • Q8WZ81

    Protein attributes for SLC39A11 Gene

    Size:
    342 amino acids
    Molecular mass:
    35396 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SLC39A11 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC39A11 Gene

Post-translational modifications for SLC39A11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SLC39A11 Gene

Domains & Families for SLC39A11 Gene

Gene Families for SLC39A11 Gene

Protein Domains for SLC39A11 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC39A11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N1S5

UniProtKB/Swiss-Prot:

S39AB_HUMAN :
  • Belongs to the ZIP transporter (TC 2.A.5) family.
Family:
  • Belongs to the ZIP transporter (TC 2.A.5) family.
genes like me logo Genes that share domains with SLC39A11: view

Function for SLC39A11 Gene

Molecular function for SLC39A11 Gene

UniProtKB/Swiss-Prot Function:
Functions as a cellular zinc transporter.

Gene Ontology (GO) - Molecular Function for SLC39A11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005385 zinc ion transmembrane transporter activity ISS --
GO:0046873 metal ion transmembrane transporter activity IEA --
genes like me logo Genes that share ontologies with SLC39A11: view
genes like me logo Genes that share phenotypes with SLC39A11: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC39A11

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC39A11 Gene

Localization for SLC39A11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC39A11 Gene

Cell membrane; Multi-pass membrane protein. Nucleus. Cytoplasm. Golgi apparatus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC39A11 Gene COMPARTMENTS Subcellular localization image for SLC39A11 gene
Compartment Confidence
golgi apparatus 5
plasma membrane 5
nucleus 4
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for SLC39A11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS --
GO:0005737 cytoplasm ISS --
GO:0005794 Golgi apparatus ISS --
GO:0005886 plasma membrane ISS --
GO:0016020 membrane IEA,IBA --
genes like me logo Genes that share ontologies with SLC39A11: view

Pathways & Interactions for SLC39A11 Gene

SuperPathways for SLC39A11 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC39A11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006829 zinc II ion transport IEA --
GO:0030001 metal ion transport IEA --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC39A11: view

No data available for Pathways by source and SIGNOR curated interactions for SLC39A11 Gene

Transcripts for SLC39A11 Gene

Unigene Clusters for SLC39A11 Gene

Solute carrier family 39 (metal ion transporter), member 11:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC39A11 Gene

No ASD Table

Relevant External Links for SLC39A11 Gene

GeneLoc Exon Structure for
SLC39A11
ECgene alternative splicing isoforms for
SLC39A11

Expression for SLC39A11 Gene

mRNA expression in normal human tissues for SLC39A11 Gene

Protein differential expression in normal tissues from HIPED for SLC39A11 Gene

This gene is overexpressed in Adipocyte (47.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SLC39A11 Gene



NURSA nuclear receptor signaling pathways regulating expression of SLC39A11 Gene:

SLC39A11

SOURCE GeneReport for Unigene cluster for SLC39A11 Gene:

Hs.221127
genes like me logo Genes that share expression patterns with SLC39A11: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SLC39A11 Gene

Orthologs for SLC39A11 Gene

This gene was present in the common ancestor of animals.

Orthologs for SLC39A11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC39A11 34 35
  • 99.5 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 92 (a)
OneToMany
-- 35
  • 91 (a)
OneToMany
-- 35
  • 67 (a)
OneToMany
-- 35
  • 56 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SLC39A11 35
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc39a11 34 16 35
  • 86.53 (n)
cow
(Bos Taurus)
Mammalia SLC39A11 34 35
  • 86.03 (n)
rat
(Rattus norvegicus)
Mammalia Slc39a11 34
  • 85.57 (n)
oppossum
(Monodelphis domestica)
Mammalia SLC39A11 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC39A11 34 35
  • 73.33 (n)
lizard
(Anolis carolinensis)
Reptilia SLC39A11 35
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc39a11 34
  • 68.39 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.16308 34
zebrafish
(Danio rerio)
Actinopterygii LOC101882215 34
  • 73.86 (n)
SLC39A11 35
  • 67 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG13189 34 35
  • 58.01 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007713 34
  • 55.22 (n)
worm
(Caenorhabditis elegans)
Secernentea F59A3.4 34 35
  • 56.56 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.554 34
Species where no ortholog for SLC39A11 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC39A11 Gene

ENSEMBL:
Gene Tree for SLC39A11 (if available)
TreeFam:
Gene Tree for SLC39A11 (if available)

Paralogs for SLC39A11 Gene

No data available for Paralogs for SLC39A11 Gene

Variants for SLC39A11 Gene

Sequence variations from dbSNP and Humsavar for SLC39A11 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1019877 -- 72,750,084(-) ATTCC(C/T)CGACC intron-variant
rs1019878 -- 72,749,881(-) TTTTA(C/T)GAATC intron-variant
rs10459884 -- 72,842,973(+) TGAGA(C/T)GGAGT intron-variant
rs10459890 -- 72,841,591(+) gttaa(C/T)aggta intron-variant
rs10459891 -- 72,842,732(+) ACACC(A/C)TAGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC39A11 Gene

Variant ID Type Subtype PubMed ID
dgv1809e59 CNV tandem duplication 20981092
dgv3280n100 CNV loss 25217958
dgv5762n54 CNV loss 21841781
dgv5763n54 CNV loss 21841781
dgv5764n54 CNV loss 21841781
dgv5765n54 CNV loss 21841781
dgv5766n54 CNV loss 21841781
dgv5767n54 CNV loss 21841781
esv1004601 CNV insertion 20482838
esv1031977 CNV insertion 17803354
esv1118006 CNV deletion 17803354
esv1465732 CNV insertion 17803354
esv1578515 CNV insertion 17803354
esv24117 CNV loss 19812545
esv2499710 CNV insertion 19546169
esv2669155 CNV deletion 23128226
esv2677783 CNV deletion 23128226
esv26793 CNV loss 19812545
esv2716187 CNV deletion 23290073
esv2716188 CNV deletion 23290073
esv27281 CNV loss 19812545
esv28025 CNV loss 19812545
esv3302677 CNV tandem duplication 20981092
esv3302919 CNV tandem duplication 20981092
esv3303367 CNV mobile element insertion 20981092
esv3399532 CNV duplication 20981092
esv3406595 CNV duplication 20981092
esv3427219 CNV insertion 20981092
esv3443813 CNV insertion 20981092
esv3554749 CNV deletion 23714750
esv3582899 CNV loss 25503493
esv3641200 CNV loss 21293372
esv3641201 CNV loss 21293372
esv3641202 CNV loss 21293372
esv3641204 CNV loss 21293372
esv3641205 CNV loss 21293372
esv3641206 CNV loss 21293372
esv3641207 CNV loss 21293372
esv3641208 CNV loss 21293372
esv3641210 CNV loss 21293372
esv3641212 CNV loss 21293372
esv3893041 CNV loss 25118596
esv3893042 CNV loss 25118596
esv3893043 CNV loss 25118596
esv6132 CNV gain 19470904
nsv1056357 CNV loss 25217958
nsv1057488 CNV loss 25217958
nsv1059797 CNV loss 25217958
nsv111666 CNV insertion 16902084
nsv1117182 CNV tandem duplication 24896259
nsv1117184 CNV tandem duplication 24896259
nsv1123140 CNV deletion 24896259
nsv1129190 CNV insertion 24896259
nsv1129595 CNV tandem duplication 24896259
nsv1153339 CNV insertion 26484159
nsv1160498 CNV duplication 26073780
nsv164 CNV insertion 15895083
nsv2137 CNV insertion 18451855
nsv442424 CNV loss 18776908
nsv457899 CNV loss 19166990
nsv470599 CNV loss 18288195
nsv472237 CNV novel sequence insertion 20440878
nsv472372 CNV novel sequence insertion 20440878
nsv473143 CNV novel sequence insertion 20440878
nsv474129 CNV novel sequence insertion 20440878
nsv474381 CNV novel sequence insertion 20440878
nsv474921 CNV novel sequence insertion 20440878
nsv479419 CNV novel sequence insertion 20440878
nsv481047 CNV novel sequence insertion 20440878
nsv481179 CNV novel sequence insertion 20440878
nsv481222 CNV novel sequence insertion 20440878
nsv481346 CNV novel sequence insertion 20440878
nsv481373 CNV novel sequence insertion 20440878
nsv509667 CNV insertion 20534489
nsv509669 CNV insertion 20534489
nsv511060 OTHER complex 20534489
nsv513479 CNV insertion 21212237
nsv517895 CNV loss 19592680
nsv519333 CNV loss 19592680
nsv519473 CNV loss 19592680
nsv523221 CNV loss 19592680
nsv524320 CNV gain 19592680
nsv525813 CNV loss 19592680
nsv528252 CNV gain 19592680
nsv528666 CNV loss 19592680
nsv575975 CNV loss 21841781
nsv575983 CNV loss 21841781
nsv575986 CNV loss 21841781
nsv962366 CNV duplication 23825009

Variation tolerance for SLC39A11 Gene

Residual Variation Intolerance Score: 50.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.48; 77.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SLC39A11 Gene

Human Gene Mutation Database (HGMD)
SLC39A11
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC39A11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC39A11 Gene

Disorders for SLC39A11 Gene

Relevant External Links for SLC39A11

Genetic Association Database (GAD)
SLC39A11
Human Genome Epidemiology (HuGE) Navigator
SLC39A11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC39A11

No disorders were found for SLC39A11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC39A11 Gene

Publications for SLC39A11 Gene

  1. Comparative genomics of the SOX9 region in human and Fugu rubripes: conservation of short regulatory sequence elements within large intergenic regions. (PMID: 11707075) Bagheri-Fam S. … Pfeifer D. (Genomics 2001) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 46 64
  4. Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis. (PMID: 19451621) Landers J.E. … Brown R.H. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 46 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for SLC39A11 Gene

Sources for SLC39A11 Gene

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