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Aliases for SLC38A11 Gene

Aliases for SLC38A11 Gene

  • Solute Carrier Family 38 Member 11 2 3 4 5
  • Solute Carrier Family 38, Member 11 2 3
  • AVT2 3 4

External Ids for SLC38A11 Gene

Previous GeneCards Identifiers for SLC38A11 Gene

  • GC02M165464
  • GC02M165754
  • GC02M157637

Summaries for SLC38A11 Gene

GeneCards Summary for SLC38A11 Gene

SLC38A11 (Solute Carrier Family 38 Member 11) is a Protein Coding gene. GO annotations related to this gene include amino acid transmembrane transporter activity. An important paralog of this gene is SLC38A1.

UniProtKB/Swiss-Prot for SLC38A11 Gene

  • Putative sodium-dependent amino acid/proton antiporter.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC38A11 Gene

Genomics for SLC38A11 Gene

Regulatory Elements for SLC38A11 Gene

Enhancers for SLC38A11 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SLC38A11 on UCSC Golden Path with GeneCards custom track

Promoters for SLC38A11 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SLC38A11 on UCSC Golden Path with GeneCards custom track

Genomic Location for SLC38A11 Gene

Chromosome:
2
Start:
164,896,186 bp from pter
End:
164,955,560 bp from pter
Size:
59,375 bases
Orientation:
Minus strand

Genomic View for SLC38A11 Gene

Genes around SLC38A11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC38A11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC38A11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC38A11 Gene

Proteins for SLC38A11 Gene

  • Protein details for SLC38A11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q08AI6-S38AB_HUMAN
    Recommended name:
    Putative sodium-coupled neutral amino acid transporter 11
    Protein Accession:
    Q08AI6
    Secondary Accessions:
    • B4DF99
    • Q8N887

    Protein attributes for SLC38A11 Gene

    Size:
    406 amino acids
    Molecular mass:
    44825 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SLC38A11 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC38A11 Gene

Proteomics data for SLC38A11 Gene at MOPED

Post-translational modifications for SLC38A11 Gene

  • Glycosylation at Asn 44 and Asn 275
  • Modification sites at PhosphoSitePlus

Other Protein References for SLC38A11 Gene

No data available for DME Specific Peptides for SLC38A11 Gene

Domains & Families for SLC38A11 Gene

Gene Families for SLC38A11 Gene

HGNC:
IUPHAR :

Protein Domains for SLC38A11 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC38A11 Gene

Graphical View of Domain Structure for InterPro Entry

Q08AI6

UniProtKB/Swiss-Prot:

S38AB_HUMAN :
  • Belongs to the amino acid/polyamine transporter 2 family.
Family:
  • Belongs to the amino acid/polyamine transporter 2 family.
genes like me logo Genes that share domains with SLC38A11: view

Function for SLC38A11 Gene

Molecular function for SLC38A11 Gene

UniProtKB/Swiss-Prot Function:
Putative sodium-dependent amino acid/proton antiporter.

Phenotypes for SLC38A11 Gene

genes like me logo Genes that share phenotypes with SLC38A11: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC38A11

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC38A11 Gene

Localization for SLC38A11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC38A11 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC38A11 Gene COMPARTMENTS Subcellular localization image for SLC38A11 gene
Compartment Confidence
endoplasmic reticulum 3
plasma membrane 3

No data available for Gene Ontology (GO) - Cellular Components for SLC38A11 Gene

Pathways & Interactions for SLC38A11 Gene

SuperPathways for SLC38A11 Gene

No Data Available

Interacting Proteins for SLC38A11 Gene

Gene Ontology (GO) - Biological Process for SLC38A11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC38A11 Gene

Drugs & Compounds for SLC38A11 Gene

(1) Additional Compounds for SLC38A11 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5
genes like me logo Genes that share compounds with SLC38A11: view

Transcripts for SLC38A11 Gene

Unigene Clusters for SLC38A11 Gene

Solute carrier family 38, member 11:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC38A11 Gene

No ASD Table

Relevant External Links for SLC38A11 Gene

GeneLoc Exon Structure for
SLC38A11
ECgene alternative splicing isoforms for
SLC38A11

Expression for SLC38A11 Gene

mRNA expression in normal human tissues for SLC38A11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SLC38A11 Gene Hs.658702

genes like me logo Genes that share expression patterns with SLC38A11: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SLC38A11 Gene

Orthologs for SLC38A11 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC38A11 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLC38A11 35
  • 87.85 (n)
  • 88.67 (a)
SLC38A11 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC38A11 35
  • 88.1 (n)
  • 86.95 (a)
SLC38A11 36
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc38a11 35
  • 84.56 (n)
  • 85.06 (a)
Slc38a11 16
Slc38a11 36
  • 74 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC38A11 35
  • 99.51 (n)
  • 99.75 (a)
SLC38A11 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc38a11 35
  • 82.1 (n)
  • 83 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 63 (a)
OneToMany
-- 36
  • 70 (a)
OneToMany
-- 36
  • 66 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SLC38A11 36
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC38A11 35
  • 72.27 (n)
  • 70.28 (a)
SLC38A11 36
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLC38A11 36
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc38a11 35
  • 66.32 (n)
  • 62.69 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100536170 35
  • 61.2 (n)
  • 60.35 (a)
slc38a11 36
  • 53 (a)
OneToMany
slc38a11 36
  • 53 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005983 35
  • 47.19 (n)
  • 39.48 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG13743 35
  • 45.66 (n)
  • 38.54 (a)
CG13743 36
  • 28 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR671W 35
  • 44.32 (n)
  • 32.68 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C02277g 35
  • 43.87 (n)
  • 28.49 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes AVT2 35
  • 45.45 (n)
  • 33.61 (a)
AVT2 36
  • 24 (a)
OneToMany
AVT2 38
bread mold
(Neurospora crassa)
Ascomycetes NCU01481 35
  • 47.48 (n)
  • 36.98 (a)
Species with no ortholog for SLC38A11:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC38A11 Gene

ENSEMBL:
Gene Tree for SLC38A11 (if available)
TreeFam:
Gene Tree for SLC38A11 (if available)

Paralogs for SLC38A11 Gene

Paralogs for SLC38A11 Gene

genes like me logo Genes that share paralogs with SLC38A11: view

Variants for SLC38A11 Gene

Sequence variations from dbSNP and Humsavar for SLC38A11 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs4564790 - 164,915,214(-) CTTAG(A/C/G/T)TACTG intron-variant, nc-transcript-variant, reference, missense
rs717339 -- 164,915,510(+) CCAAC(A/C)TTCTC intron-variant
rs727452 -- 164,916,373(+) TTTTC(A/G)GGCTT intron-variant
rs751460 -- 164,953,466(-) CAATG(C/T)TAAAC intron-variant
rs751461 -- 164,953,383(-) AAATA(C/T)GTTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC38A11 Gene

Variant ID Type Subtype PubMed ID
nsv834444 CNV Gain 17160897

Variation tolerance for SLC38A11 Gene

Residual Variation Intolerance Score: 31.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.93; 35.94% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for SLC38A11 Gene

Disorders for SLC38A11 Gene

Relevant External Links for SLC38A11

Genetic Association Database (GAD)
SLC38A11
Human Genome Epidemiology (HuGE) Navigator
SLC38A11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SLC38A11

No disorders were found for SLC38A11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC38A11 Gene

Publications for SLC38A11 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48 67
  2. A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus. (PMID: 25130324) Cai D.C. … Hagoort P. (Genes Brain Behav. 2014) 3
  3. Evolutionary origin of amino acid transporter families SLC32, SLC36 and SLC38 and physiological, pathological and therapeutic aspects. (PMID: 23506890) SchiAPth H.B. … Fredriksson R. (Mol. Aspects Med. 2013) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SLC38A11 Gene

Sources for SLC38A11 Gene

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