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Aliases for SLC38A10 Gene

Aliases for SLC38A10 Gene

  • Solute Carrier Family 38, Member 10 2 3
  • Putative Sodium-Coupled Neutral Amino Acid Transporter 10 3
  • Solute Carrier Family 38 Member 10 4
  • PP1744 3

External Ids for SLC38A10 Gene

Previous GeneCards Identifiers for SLC38A10 Gene

  • GC17M076834
  • GC17M079218
  • GC17M074654

Summaries for SLC38A10 Gene

GeneCards Summary for SLC38A10 Gene

SLC38A10 (Solute Carrier Family 38, Member 10) is a Protein Coding gene. An important paralog of this gene is SLC38A1.

UniProtKB/Swiss-Prot for SLC38A10 Gene

  • Putative sodium-dependent amino acid/proton antiporter.

Gene Wiki entry for SLC38A10 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC38A10 Gene

Genomics for SLC38A10 Gene

Regulatory Elements for SLC38A10 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SLC38A10 Gene

Start:
81,244,811 bp from pter
End:
81,295,547 bp from pter
Size:
50,737 bases
Orientation:
Minus strand

Genomic View for SLC38A10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLC38A10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC38A10 Gene

Proteins for SLC38A10 Gene

  • Protein details for SLC38A10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBR0-S38AA_HUMAN
    Recommended name:
    Putative sodium-coupled neutral amino acid transporter 10
    Protein Accession:
    Q9HBR0
    Secondary Accessions:
    • Q6ZRC5
    • Q8NA99
    • Q96C66

    Protein attributes for SLC38A10 Gene

    Size:
    1119 amino acids
    Molecular mass:
    119762 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG17235.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC04027.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC38A10 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC38A10 Gene

Proteomics data for SLC38A10 Gene at MOPED

Post-translational modifications for SLC38A10 Gene

  • Glycosylation at Ser429, Ser524, Ser795, Ser802, Ser806, Thr886, Thr902, Thr904, Ser905, Thr921, Ser965, Ser997, and Ser1106
  • Modification sites at PhosphoSitePlus

Other Protein References for SLC38A10 Gene

No data available for DME Specific Peptides for SLC38A10 Gene

Domains for SLC38A10 Gene

Gene Families for SLC38A10 Gene

HGNC:
  • SLC :Solute carriers
IUPHAR :

Protein Domains for SLC38A10 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC38A10 Gene

Graphical View of Domain Structure for InterPro Entry

Q9HBR0

UniProtKB/Swiss-Prot:

S38AA_HUMAN :
  • Q9HBR0
Family:
  • Belongs to the amino acid/polyamine transporter 2 family.
genes like me logo Genes that share domains with SLC38A10: view

Function for SLC38A10 Gene

Molecular function for SLC38A10 Gene

UniProtKB/Swiss-Prot Function:
Putative sodium-dependent amino acid/proton antiporter.

Gene Ontology (GO) - Molecular Function for SLC38A10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015171 amino acid transmembrane transporter activity IBA --
genes like me logo Genes that share ontologies with SLC38A10: view
genes like me logo Genes that share phenotypes with SLC38A10: view

Animal Model Products

CRISPR Products

miRNA for SLC38A10 Gene

miRTarBase miRNAs that target SLC38A10

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SLC38A10

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for SLC38A10 Gene

Localization for SLC38A10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC38A10 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC38A10 Gene COMPARTMENTS Subcellular localization image for SLC38A10 gene
Compartment Confidence
golgi apparatus 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for SLC38A10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IDA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC38A10: view

Pathways for SLC38A10 Gene

SuperPathways for SLC38A10 Gene

No Data Available

Interacting Proteins for SLC38A10 Gene

Gene Ontology (GO) - Biological Process for SLC38A10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003333 amino acid transmembrane transport IBA --
GO:0006814 sodium ion transport IEA --
GO:0006865 amino acid transport --
GO:0060348 bone development IEA --
genes like me logo Genes that share ontologies with SLC38A10: view

No data available for Pathways by source for SLC38A10 Gene

Compounds for SLC38A10 Gene

(1) HMDB Compounds for SLC38A10 Gene

Compound Synonyms Cas Number PubMed IDs
Sodium
  • Sodium
7440-23-5
genes like me logo Genes that share compounds with SLC38A10: view

Transcripts for SLC38A10 Gene

Unigene Clusters for SLC38A10 Gene

Solute carrier family 38, member 10:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SLC38A10

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC38A10 Gene

No ASD Table

Relevant External Links for SLC38A10 Gene

GeneLoc Exon Structure for
SLC38A10
ECgene alternative splicing isoforms for
SLC38A10

Expression for SLC38A10 Gene

mRNA expression in normal human tissues for SLC38A10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for SLC38A10 Gene

This gene is overexpressed in Adrenal (34.3), Pancreas (8.2), and Peripheral blood mononuclear cells (6.2).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for SLC38A10 Gene

SOURCE GeneReport for Unigene cluster for SLC38A10 Gene Hs.352240

genes like me logo Genes that share expressions with SLC38A10: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for SLC38A10 Gene

Orthologs for SLC38A10 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC38A10 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SLC38A10 35
  • 79.58 (n)
  • 73.99 (a)
SLC38A10 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC38A10 35
  • 78.49 (n)
  • 72.48 (a)
SLC38A10 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc38a10 35
  • 76.66 (n)
  • 72.18 (a)
Slc38a10 16
Slc38a10 36
  • 70 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SLC38A10 35
  • 97.62 (n)
  • 97.07 (a)
rat
(Rattus norvegicus)
Mammalia Slc38a10 35
  • 76.23 (n)
  • 70.93 (a)
oppossum
(Monodelphis domestica)
Mammalia SLC38A10 36
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC38A10 36
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC38A10 35
  • 64.94 (n)
  • 60.24 (a)
SLC38A10 36
  • 54 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLC38A10 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc38a10 35
  • 66.92 (n)
  • 68.03 (a)
African clawed frog
(Xenopus laevis)
Amphibia MGC69139 35
zebrafish
(Danio rerio)
Actinopterygii slc38a10 36
  • 44 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG30394 36
  • 28 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y51F10.4 35
  • 45.55 (n)
  • 34.03 (a)
Y51F10.4 36
  • 27 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes AVT2 36
  • 20 (a)
OneToMany
AVT5 38
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 48 (a)
OneToOne
Species with no ortholog for SLC38A10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC38A10 Gene

ENSEMBL:
Gene Tree for SLC38A10 (if available)
TreeFam:
Gene Tree for SLC38A10 (if available)

Paralogs for SLC38A10 Gene

Paralogs for SLC38A10 Gene

genes like me logo Genes that share paralogs with SLC38A10: view

Variants for SLC38A10 Gene

Sequence variations from dbSNP and Humsavar for SLC38A10 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs884028 -- 81,256,987(+) GGGAG(G/T)CGGGA intron-variant
rs2271090 -- 81,272,805(-) CCGTT(C/T)AAGTT intron-variant
rs2279910 -- 81,281,073(+) GCTGG(C/T)TTCCC intron-variant
rs2279911 -- 81,282,181(+) GCTGC(C/T)GACTC intron-variant
rs2279912 -- 81,282,436(+) CCGAC(A/G)GCATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC38A10 Gene

Variant ID Type Subtype PubMed ID
esv26223 CNV Gain+Loss 19812545
nsv828128 CNV Loss 20364138
nsv909000 CNV Loss 21882294
dgv3308n71 CNV Loss 21882294
nsv470619 CNV Loss 18288195
dgv3310n71 CNV Loss 21882294
dgv3316n71 CNV Loss 21882294
nsv909052 CNV Loss 21882294
dgv46n68 CNV Loss 17160897
dgv3317n71 CNV Loss 21882294
dgv1003e1 CNV Complex 17122850
nsv428351 CNV Gain 18775914
dgv3318n71 CNV Loss 21882294
dgv3319n71 CNV Loss 21882294
nsv457971 CNV Loss 19166990
dgv3320n71 CNV Loss 21882294
dgv3321n71 CNV Loss 21882294
nsv909067 CNV Gain+Loss 21882294
dgv3322n71 CNV Loss 21882294
nsv509677 CNV Insertion 20534489
nsv909074 CNV Loss 21882294
nsv2161 CNV Insertion 18451855
esv987875 CNV Insertion 20482838
esv2716444 CNV Deletion 23290073
esv2716445 CNV Deletion 23290073
dgv3323n71 CNV Loss 21882294
esv997494 CNV Insertion 20482838
nsv909076 CNV Loss 21882294
dgv3324n71 CNV Loss 21882294

Relevant External Links for SLC38A10 Gene

HapMap Linkage Disequilibrium report
SLC38A10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC38A10 Gene

Disorders for SLC38A10 Gene

Relevant External Links for SLC38A10

Genetic Association Database (GAD)
SLC38A10

No disorders were found for SLC38A10 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for SLC38A10 Gene

Publications for SLC38A10 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Joint influence of small-effect genetic variants on human longevity. (PMID: 20834067) Yashin A.I. … Ukraintseva S.V. (Aging (Albany NY) 2010) 3 48
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  4. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G. … Rudan I. (PLoS Genet. 2013) 3
  5. Evolutionary origin of amino acid transporter families SLC32, SLC36 and SLC38 and physiological, pathological and therapeutic aspects. (PMID: 23506890) SchiAPth H.B. … Fredriksson R. (Mol. Aspects Med. 2013) 3

Products for SLC38A10 Gene

Sources for SLC38A10 Gene

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