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Aliases for SLC35F5 Gene

Aliases for SLC35F5 Gene

  • Solute Carrier Family 35, Member F5 2 3
  • Hepatitis C Virus NS5A-Transactivated Protein 3 4
  • HCV NS5A-Transactivated Protein 3 4
  • NS5ATP3 4

External Ids for SLC35F5 Gene

Summaries for SLC35F5 Gene

GeneCards Summary for SLC35F5 Gene

SLC35F5 (Solute Carrier Family 35, Member F5) is a Protein Coding gene. Diseases associated with SLC35F5 include hepatitis c and hepatitis c virus.

UniProtKB/Swiss-Prot for SLC35F5 Gene

  • Putative solute transporter.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC35F5 Gene

Genomics for SLC35F5 Gene

Genomic Location for SLC35F5 Gene

Start:
113,705,011 bp from pter
End:
113,756,823 bp from pter
Size:
51,813 bases
Orientation:
Minus strand

Genomic View for SLC35F5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLC35F5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC35F5 Gene

Regulatory Elements for SLC35F5 Gene

Proteins for SLC35F5 Gene

  • Protein details for SLC35F5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WV83-S35F5_HUMAN
    Recommended name:
    Solute carrier family 35 member F5
    Protein Accession:
    Q8WV83
    Secondary Accessions:
    • Q9H6P8
    • Q9H7D8

    Protein attributes for SLC35F5 Gene

    Size:
    523 amino acids
    Molecular mass:
    58887 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB14954.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC35F5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC35F5 Gene

Proteomics data for SLC35F5 Gene at MOPED

Post-translational modifications for SLC35F5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SLC35F5 Gene

No data available for DME Specific Peptides for SLC35F5 Gene

Domains for SLC35F5 Gene

Gene Families for SLC35F5 Gene

Protein Domains for SLC35F5 Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC35F5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WV83

UniProtKB/Swiss-Prot:

S35F5_HUMAN
Domain:
  • Contains 1 EamA domain.:
    • Q8WV83
Family:
  • Belongs to the SLC35F solute transporter family.:
    • Q8WV83
genes like me logo Genes that share domains with SLC35F5: view

Function for SLC35F5 Gene

Molecular function for SLC35F5 Gene

UniProtKB/Swiss-Prot Function: Putative solute transporter.

miRNA for SLC35F5 Gene

miRTarBase miRNAs that target SLC35F5

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SLC35F5 Gene

Localization for SLC35F5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC35F5 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC35F5 Gene COMPARTMENTS Subcellular localization image for SLC35F5 gene
Compartment Confidence
plasma membrane 3
peroxisome 1

Gene Ontology (GO) - Cellular Components for SLC35F5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC35F5: view

Pathways for SLC35F5 Gene

SuperPathways for SLC35F5 Gene

No Data Available

Interacting Proteins for SLC35F5 Gene

Gene Ontology (GO) - Biological Process for SLC35F5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with SLC35F5: view

No data available for Pathways by source for SLC35F5 Gene

Transcripts for SLC35F5 Gene

Unigene Clusters for SLC35F5 Gene

Solute carrier family 35, member F5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC35F5 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17a · 17b
SP1: -
SP2: - -
SP3:
SP4:
SP5: -
SP6: -
SP7: -

Relevant External Links for SLC35F5 Gene

GeneLoc Exon Structure for
SLC35F5
ECgene alternative splicing isoforms for
SLC35F5

Expression for SLC35F5 Gene

mRNA expression in normal human tissues for SLC35F5 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SLC35F5 Gene

SOURCE GeneReport for Unigene cluster for SLC35F5 Gene Hs.632527

mRNA Expression by UniProt/SwissProt for SLC35F5 Gene

Q8WV83-S35F5_HUMAN
Tissue specificity: Expressed in colorectal cancer cells.
genes like me logo Genes that share expressions with SLC35F5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for SLC35F5 Gene

Orthologs for SLC35F5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SLC35F5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC35F5 35
  • 99.24 (n)
  • 99.24 (a)
SLC35F5 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLC35F5 35
  • 93.56 (n)
  • 94.26 (a)
SLC35F5 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC35F5 35
  • 94.07 (n)
  • 95.03 (a)
SLC35F5 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc35f5 35
  • 88.66 (n)
  • 94.26 (a)
Slc35f5 16
Slc35f5 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLC35F5 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SLC35F5 36
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc35f5 35
  • 88.59 (n)
  • 93.69 (a)
chicken
(Gallus gallus)
Aves SLC35F5 35
  • 84.38 (n)
  • 91.81 (a)
SLC35F5 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLC35F5 36
  • 88 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006969 35
  • 50 (n)
  • 44.84 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG8195 35
  • 51.23 (n)
  • 45.83 (a)
CG8195 36
  • 43 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea B0041.5 35
  • 45.78 (n)
  • 32.64 (a)
B0041.5 36
  • 30 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 34 (a)
OneToMany
THI74 36
  • 33 (a)
OneToMany
THI74 38
YML018C 35
  • 48.7 (n)
  • 38.62 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B01177g 35
  • 47.81 (n)
  • 37.82 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G32140 35
  • 46.05 (n)
  • 33.24 (a)
rice
(Oryza sativa)
Liliopsida Os04g0645600 35
  • 47.29 (n)
  • 31.68 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC405.03c 35
  • 50.51 (n)
  • 39.65 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13326 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 47 (a)
OneToOne
Species with no ortholog for SLC35F5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for SLC35F5 Gene

ENSEMBL:
Gene Tree for SLC35F5 (if available)
TreeFam:
Gene Tree for SLC35F5 (if available)

Paralogs for SLC35F5 Gene

No data available for Paralogs for SLC35F5 Gene

Variants for SLC35F5 Gene

Sequence variations from dbSNP and Humsavar for SLC35F5 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs10938 -- 113,714,355(-) TACGT(C/G)TATTT utr-variant-3-prime, nc-transcript-variant
rs1053413 -- 113,714,344(-) GTGTA(C/T)TGTAG utr-variant-3-prime, nc-transcript-variant
rs1062074 -- 113,713,942(-) TTTTA(A/G)GAATT utr-variant-3-prime, nc-transcript-variant
rs1349157 -- 113,736,306(-) TACCA(C/T)GCCTG intron-variant
rs2044687 -- 113,718,914(-) ttctt(C/T)ctttc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SLC35F5 Gene

Variant ID Type Subtype PubMed ID
nsv2882 CNV Insertion 18451855
nsv819660 CNV Loss 19587683
nsv2883 CNV Loss 18451855

Relevant External Links for SLC35F5 Gene

HapMap Linkage Disequilibrium report
SLC35F5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC35F5 Gene

Disorders for SLC35F5 Gene

genes like me logo Genes that share disorders with SLC35F5: view

No data available for UniProtKB/Swiss-Prot for SLC35F5 Gene

Publications for SLC35F5 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  3. Global identification of modular cullin-RING ligase substrates. (PMID: 21963094) Emanuele M.J. … Elledge S.J. (Cell 2011) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for SLC35F5 Gene

  • antibodies-online peptides for SLC35F5
  • antibodies-online antibodies for SLC35F5
  • antibodies-online kits for SLC35F5

Sources for SLC35F5 Gene

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