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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SLC35F5 Gene

protein-coding   GIFtS: 44
GCID: GC02M114462

Solute Carrier Family 35, Member F5

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Solute Carrier Family 35, Member F51 2
Hepatitis C Virus NS5A-Transactivated Protein 32 3
HCV NS5A-Transactivated Protein 32 3
Solute Carrier Family 35 Member F52
NS5ATP33

External Ids:    HGNC: 236171   Entrez Gene: 802552   Ensembl: ENSG000001150847   UniProtKB: Q8WV833   

Export aliases for SLC35F5 gene to outside databases

Previous GC identifers: GC02M114567 GC02M114188 GC02M106790


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SLC35F5 Gene: 
SLC35F5 (solute carrier family 35, member F5) is a protein-coding gene. Diseases associated with SLC35F5 include hepatitis c, and hepatitis.

UniProtKB/Swiss-Prot: S35F5_HUMAN, Q8WV83
Function: Putative solute transporter (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000002.11  NT_022135.16  NC_018913.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SLC35F5 gene promoter:
         STAT1   FOXD3   STAT1beta   STAT1alpha   CREB   POU2F1   Ik-2   FOXJ2 (long isoform)   POU2F1a   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSLC35F5 promoter sequence
   Search SABiosciences Chromatin IP Primers for SLC35F5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SLC35F5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q14.1   Ensembl cytogenetic band:  2q14.1   HGNC cytogenetic band: 2q14.1

SLC35F5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SLC35F5 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M114462:  view genomic region     (about GC identifiers)

Start:
114,462,588 bp from pter      End:
114,514,400 bp from pter
Size:
51,813 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: S35F5_HUMAN, Q8WV83 (See protein sequence)
Recommended Name: Solute carrier family 35 member F5  
Size: 523 amino acids; 58887 Da
Subcellular location: Membrane; Multi-pass membrane protein (Potential)
Sequence caution: Sequence=BAB14954.1; Type=Erroneous initiation;
Secondary accessions: Q9H6P8 Q9H7D8
Alternative splicing: 2 isoforms:  Q8WV83-1   Q8WV83-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SLC35F5: NX_Q8WV83

Explore proteomics data for SLC35F5 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8WV83

  • SLC35F5 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SLC35F5 Protein Expression
    REFSEQ proteins: NP_079457.2  
    ENSEMBL proteins: 
     ENSP00000245680   ENSP00000386754   ENSP00000406253   ENSP00000396456   ENSP00000386991  

    Human Recombinant Protein Products for SLC35F5: 
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    Novus Biologicals SLC35F5 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for SLC35F5 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020membrane ----
    GO:0016021integral to membrane IEA--

    SLC35F5 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SLC: Solute carriers

    IUPHAR Guide to PHARMACOLOGY protein family classification: SLC35F5 
    SLC35 family of nucleotide sugar transporters

    1 InterPro protein domain:
     IPR000620 DMT

    Graphical View of Domain Structure for InterPro Entry Q8WV83

    ProtoNet protein and cluster: Q8WV83

    1 Blocks protein domain: IPB000620 Protein of unknown function DUF6

    UniProtKB/Swiss-Prot: S35F5_HUMAN, Q8WV83
    Similarity: Belongs to the SLC35F solute transporter family
    Similarity: Contains 1 EamA domain


    SLC35F5 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: S35F5_HUMAN, Q8WV83
    Function: Putative solute transporter (Potential)

    Phenotypes:
         1 MGI phenotypic allele for Slc35f5 (no phenotypes)


    SLC35F5 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Slc35f5tm1Lex for SLC35F5

       inGenious Targeting Laboratory - Custom generated mouse model solutions for SLC35F5 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for SLC35F5

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SLC35F5 
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for SLC35F5 

    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmidSLC35F5 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SLC35F5


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SLC35F5

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    5/19 Interacting proteins for SLC35F5 (Q8WV833 ENSP000002456804) via UniProtKB, MINT, STRING, and/or I2D (see all 19)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ENSG00000258947Q135093I2D: score=1 
    TUBB3Q135093I2D: score=1 
    ATP2B3Q167203I2D: score=4 
    ATP5BP065763I2D: score=1 
    ATP6V1B2P212813I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006810transport IEA--

    SLC35F5 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SLC35F5 (S35F5)

    Search CenterWatch for drugs/clinical trials and news about SLC35F5 / S35F5

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SLC35F5 gene: 
    NM_025181.2  

    Unigene Cluster for SLC35F5:

    Solute carrier family 35, member F5
    Hs.632527  [show with all ESTs]
    Unigene Representative Sequence: BC050096
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000469702 ENST00000245680(uc002tku.1) ENST00000409106(uc002tkt.3)
    ENST00000420066 ENST00000459683 ENST00000470204 ENST00000469314 ENST00000447673
    ENST00000485214 ENST00000409342(uc002tkv.3) ENST00000498768 ENST00000460863

    miRNA
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    8/24 QIAGEN miScript miRNA Assays for microRNAs that regulate SLC35F5 (see all 24):
    hsa-miR-142-3p hsa-miR-3910 hsa-miR-607 hsa-miR-657 hsa-miR-219-5p hsa-miR-3133 hsa-miR-639 hsa-miR-124
    SwitchGear 3'UTR luciferase reporter plasmidSLC35F5 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SLC35F5
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    Additional mRNA sequence: 

    AF529364.1 AK025657.1 AK315719.1 AY358620.1 BC018537.1 BC050096.1 

    14 DOTS entries:

    DT.115648  DT.109902  DT.100795164  DT.100795156  DT.100795161  DT.100795157  DT.308384  DT.100658012 
    DT.97784072  DT.100795159  DT.120997123  DT.120997174  DT.91749406  DT.95342957 

    24/160 AceView cDNA sequences (see all 160):

    AI038495 BG623237 BX954117 BE963052 AA465381 CA943104 BQ014794 CF593631 
    CA489269 AY358620 BM470126 AI911442 BG261384 CR615423 AA385337 BX363850 
    BQ004632 AL711193 AF529364 BC050096 AU279944 AA465455 AW514850 BX457556 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SLC35F5 (see all 7)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17a · 17b
    SP1:                                                                          -                                                                                 
    SP2:                    -     -                                                                                                                                 
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                            -               


    ECgene alternative splicing isoforms for SLC35F5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SLC35F5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAAATTTTT
    SLC35F5 Expression
    About this image


    See SLC35F5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SLC35F5

    SOURCE GeneReport for Unigene cluster: Hs.632527

    UniProtKB/Swiss-Prot: S35F5_HUMAN, Q8WV83
    Tissue specificity: Expressed in colorectal cancer cells

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for SLC35F5 gene from 10/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Slc35f51 , 5 solute carrier family 35, member F51, 5 88.66(n)1
    94.26(a)1
      1 (54.70 cM)5
    741501  NM_028787.41  NP_083063.21 
     1255610165 
    chicken
    (Gallus gallus)
    Aves SLC35F51 solute carrier family 35, member F5 81.65(n)
    88.57(a)
      424281  XM_422127.3  XP_422127.3 
    lizard
    (Anolis carolinensis)
    Reptilia SLC35F56
    solute carrier family 35, member F5
    89(a)
    1 ↔ 1
    1(80335752-80365660)
    African clawed frog
    (Xenopus laevis)
    Amphibia BJ033677.12   -- 75.47(n)    BJ033677.1 
    rainbow trout
    (Oncorhynchus mykiss)
    Actinopterygii BX306243.12   -- 76.26(n)    BX306243.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG81951 CG8195 51.24(n)
    46.28(a)
      36725  NM_137205.3  NP_611049.1 
    worm
    (Caenorhabditis elegans)
    Secernentea B0041.51 Protein B0041.5 46.13(n)
    32.9(a)
      172075  NM_059017.5  NP_491418.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes THI74(YDR438W)4 Mitochondrial transporter repressible by thiamine   --   4(1338274-1339386) 852048  NP_010726.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT4G321401 EamA-like transporter family protein 45.96(n)
    33.24(a)
      829346  NM_119366.3  NP_194941.1 
    rice
    (Oryza sativa)
    Liliopsida Os04g06456001 hypothetical protein 46.67(n)
    31.08(a)
      4337195  NM_001060601.1  NP_001054066.1 


    ENSEMBL Gene Tree for SLC35F5 (if available)
    TreeFam Gene Tree for SLC35F5 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/864 SNPs in SLC35F5 are shown (see all 864)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 2 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1144894761,2
    C,F--113981432(+) AAAGCA/GATTTT 1 -- int11Minor allele frequency- G:0.02NA 120
    rs10620741,2
    C,F,H--113981478(-) TTTTAA/GGAATT 1 -- int19Minor allele frequency- G:0.09MN NS EA NA 726
    rs1167713521,2
    F--113981514(+) GAGAAC/TTAAAC 1 -- int11Minor allele frequency- T:0.03WA 118
    rs1883340441,2
    C--113981549(+) TATTGA/GTTAAT 1 -- int10--------
    rs1131899931,2
    F--113981581(+) ACATAC/TGTTTA 1 -- int12Minor allele frequency- T:0.04CSA WA 120
    rs105148101,2
    C,F,H--113981741(+) CTTCTC/TGCCTT 1 -- int1103Minor allele frequency- T:0.15NS EA PA EU CA WA NA 6748
    rs1463810611,2
    --113981764(+) CTTTAA/GCCATT 1 -- int10--------
    rs1930287391,2
    --113981768(+) AACCAC/TTACAA 1 -- int10--------
    rs1846216931,2
    C--113981818(+) TCTAGG/TTCTAG 1 -- int10--------
    rs1397114021,2
    --113981832(+) AATCTC/GGCACA 1 -- int10--------

    HapMap Linkage Disequilibrium report for SLC35F5 (114462588 - 114514400 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for SLC35F5:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv2882CNV Insertion18451855
    nsv2883CNV Loss18451855
    nsv819660CNV Loss19587683

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    3 diseases for SLC35F5:    About MalaCards
    hepatitis c    hepatitis    colorectal cancer


    SLC35F5 for disorders           About GeneDecksing


    Export disorders for SLC35F5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SLC35F5 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SLC35F5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
    2. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    3. Global identification of modular cullin-RING ligase su bstrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (2011)
    4. Predicting 5-fluorouracil chemosensitivity of liver metastases from colorectal cancer using primary tumor specimens: three-gene expression model predicts clinical response. (PubMed id 16477629)2 Matsuyama R....Shimada H. (2006)
    5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    7. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    9. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
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      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 80255 HGNC: 23617 AceView: SLC35F5 Ensembl:ENSG00000115084 euGenes: HUgn80255
    ECgene: SLC35F5 H-InvDB: SLC35F5

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SLC35F5 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SLC35F5 gene:
    Search GeneIP for patents involving SLC35F5

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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